Clone Sequence Records
BS10836.3prime Sequence
834 bp (816 high quality bases) assembled on 2006-04-19
> BS10836.3prime
ATGGTCTAGAAAGCTTCTAGATGAGCGCATCGGTGTAAACCTCCTCCTCG
TTGACGACAAAGTCGCCGAACACCTCCTCCTGACAGCCCACGTCCATGTC
GCCGAAGTCCTCGTAGTACATGTCAGAGTCTAGCAGGATCTGTTCCTCCT
GCAGCCCGAGAATGGGATAGCCCGGATTGGTGAGAGCGTCCTCTGCTGCC
AGCACTTCCGTTTTCACCTCCGCCGGCTCCTCTGGTTCATCTTGTTCCTC
CTCCTCATCCGGCGGTTCCTCCGCTTCGTCGGGCTCTTCTTCGTCCTCGC
CGGTGGAGTCCATGGCTGGCAACTTGGGCTGCTGCGGTAGCTGCATCTGA
TGCGGCTGTTGTTGCAGATGCTGCTGCTGTTGTTGTTGCGGATGTTGCTG
TTGTTGTTGCGGAGGTTGTTGCTGGTGCTGTTGATGCTGCTGCTGATGGT
TCATCTGCTGCAGGACGCACTGAACCCGCTCCACATAGGCTTGCTGCTCC
TCTGCACTGCACTTGACGTCTGGAATCGCTCCGCCCGGCGCCGTGTTCAT
TCCGGACTGCTTCATCGTGTCCAGCAGCGCTGCGTGCTGGCTGTGCACAT
GGCTGGCCAGTGCAGTGGCATCCGCATGCAACGATCCGCAGACAATGCAA
ACGAGTGTTTCGTGCGGCTGCTTGGCGACCAGCAGGCCAGGCGACGTGGA
TGCGGAGGCGGCCGAAGCCATCTGGTGCGCCTGGATGTGCTTGTTGAGGT
ACGCCTGCTGGCTGTACGACTTGCCGCATATGGGACACGGGTAGGGCTTC
TCGCCCGCATGGATCTTCATGTGACCACTCAGAC
BS10836.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12299-PA | 2211 | CG12299-RA | 1394..2211 | 834..17 | 4065 | 99.8 | Minus |
| CG16902-PC | 4557 | Hr4-RC | 3130..3158 | 445..417 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12299-RA | 3310 | CG12299-RA | 1829..2647 | 834..16 | 4080 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10739281..10740099 | 834..16 | 4080 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:33:38 has no hits.
BS10836.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:13 Download gff for
BS10836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12299-PA | 1394..2211 | 17..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:16:13 Download gff for
BS10836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12299-PA | 1394..2211 | 17..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:26:56 Download gff for
BS10836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12299-RA | 1829..2650 | 12..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:16:50 Download gff for
BS10836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12299-RA | 1829..2650 | 12..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:16:50 Download gff for
BS10836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10739281..10740102 | 12..834 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:26:56 Download gff for
BS10836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10739281..10740102 | 12..834 | 99 | | Minus |
BS10836.5prime Sequence
934 bp (849 high quality bases) assembled on 2006-04-19
> BS10836.5prime
GAAGTTATCAGTCGACATGGCCGTGCAGCTGAAACAGAGCTACCACCACC
TGCCCCTGACGATCACGCCAATCCTGCAGCAGACGCACCTCCTGCCGCAA
CAGGCACCCAATCCACCCCAGCAGCAACCGCAGCAGCCACAGCCGCCGGA
TCTCACCTTCCACTGCATGTGCTGTGCGGAGTTCTTCGTCCATCCGCTGG
CGCTGTACCAGCACATGAACACCCTGCACCCCCATGAGCCGGGCAATGGA
CAGCAAGAGCAGGAGAGCCCGGGCGACGAGAGCGAGGACTACAGCTGGAT
ATTCGAGCCGGTGTGCGAGCTGGCGGAGGATGGCAGCGACTCGTCGGATG
GGAGCGCCTCCTCGGGCTCCGACAGCTCCTCGTCGTCGGACGACGACGAT
GACGATGACGACGACGACAGCAGCAGCTCCAGTTCGAGTTCCAGCAACTC
GAGCTCATCAAGCAGCTCGGTGCCGACCACCAGCAACTCCAATACCCAGC
AGAGCCAGGAGTCAGTGCAGCCACTTCACGGCCTGGTTGCCGGTCCGGGC
TACAATGAGTTCCAGCTGCAGATGACAGATCCGCGGGAGTCCACCTCCAT
ATTCATGGTGCAGCCGACCGTAAGCGTCACGCCCTTGCAGCAGCTACTAC
CACCGGCACCCACTGTTAGCCCGGGATTGGGCCTGCAATCGACGCCCATC
AAGCGGCGGCGCGGAAGGCGGAGCAACATCGGTGCACCCGTGATGGATCC
AGCGTTGAATGGCAACCAGAAATGCTTCCAGTGCACGCACTGCGAGGCGA
GCTTTCCCAACGCCGGCGATCTGTCCAAGCACGTGCGCTCGCACATCACC
AACAAGCCGTTCCAGTGCTCCATCTGCCAGAAGACATTCACGCACATCGG
CAGCCTGAACACGCACATCCGCATCCACAGCGGC
BS10836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12299-PA | 2211 | CG12299-RA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12299-RA | 3310 | CG12299-RA | 436..1353 | 17..934 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10737888..10738805 | 17..934 | 4590 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 05:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 115..173 | 78..137 | 126 | 70 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9145..9203 | 78..137 | 126 | 70 | Plus |
BS10836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:14 Download gff for
BS10836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12299-PA | 1..918 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:16:15 Download gff for
BS10836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12299-PA | 1..918 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:53:39 Download gff for
BS10836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12299-RA | 436..1353 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:30:52 Download gff for
BS10836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12299-RA | 436..1353 | 17..934 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:30:52 Download gff for
BS10836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10737888..10738805 | 17..934 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:53:39 Download gff for
BS10836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10737888..10738805 | 17..934 | 100 | | Plus |
BS10836.complete Sequence
2243 bp assembled on 2008-08-15
GenBank Submission: KX804078
> BS10836.complete
GAAGTTATCAGTCGACATGGCCGTGCAGCTGAAACAGAGCTACCACCACC
TGCCCCTGACGATCACGCCAATCCTGCAGCAGACGCACCTCCTGCCGCAA
CAGGCACCCAATCCACCCCAGCAGCAACCGCAGCAGCCACAGCCGCCGGA
TCTCACCTTCCACTGCATGTGCTGTGCGGAGTTCTTCGTCCATCCGCTGG
CGCTGTACCAGCACATGAACACCCTGCACCCCCATGAGCCGGGCAATGGA
CAGCAAGAGCAGGAGAGCCCGGGCGACGAGAGCGAGGACTACAGCTGGAT
ATTCGAGCCGGTGTGCGAGCTGGCGGAGGATGGCAGCGACTCGTCGGATG
GGAGCGCCTCCTCGGGCTCCGACAGCTCCTCGTCGTCGGACGACGACGAT
GACGATGACGACGACGACAGCAGCAGCTCCAGTTCGAGTTCCAGCAACTC
GAGCTCATCAAGCAGCTCGGTGCCGACCACCAGCAACTCCAATACCCAGC
AGAGCCAGGAGTCAGTGCAGCCACTTCACGGCCTGGTTGCCGGTCCGGGC
TACAATGAGTTCCAGCTGCAGATGACAGATCCGCGGGAGTCCACCTCCAT
ATTCATGGTGCAGCCGACCGTAAGCGTCACGCCCTTGCAGCAGCTACTAC
CACCGGCACCCACTGTTAGCCCGGGATTGGGCCTGCAATCGACGCCCATC
AAGCGGCGGCGCGGAAGGCGGAGCAACATCGGTGCACCCGTGATGGATCC
AGCGTTGAATGGCAACCAGAAATGCTTCCAGTGCACGCACTGCGAGGCGA
GCTTTCCCAACGCCGGCGATCTGTCCAAGCACGTGCGCTCGCACATCACC
AACAAGCCGTTCCAGTGCTCCATCTGCCAGAAGACATTCACGCACATCGG
CAGCCTGAACACGCACATCCGCATCCACAGCGGCGAGAAGCCGTACAAGT
GCGAGCTCTGCCCGAAGGCCTTCACGCAGTCCAGCAGCCTGATGGTGCAC
ATGCGCTCGCATTCGGTGCGCAAGCCGCATCAGTGTGTGCAGTGCGACAA
GGGATTCATCAACTACAGCTCGCTGCTGCTGCACCAGAAGACGCACATCG
CGCCCACGGAGACGTTCATCTGTCCGGAGTGCGAGCGCGAATTCAAGGCG
GAGGCGCTGCTCGACGAGCACATGCGCATGCATACGCAGGAGCTGGTGTA
CCAGTGCGCCATCTGCCGCGAGGCCTTCCGCGCCAGCTCGGAGCTGGTAC
AGCACATGAAGAACCACATGGGCGAGAAGCCATTCACCTGCTCGCTGTGC
GACCGCTCGTTCACGCAGTCGGGTAGCCTGAACATCCACATGCGCATCCA
TACCGGCGAAAAGCCGTTCCAGTGCAAGCTATGCGACAAGTGCTTCACAC
AGGCCTCCAGTCTGAGTGTTCACATGAAGATCCATGCGGGCGAGAAGCCC
TACCCGTGTCCCATATGCGGCAAGTCGTACAGCCAGCAGGCGTACCTCAA
CAAGCACATCCAGGCGCACCAGATGGCTTCGGCCGCCTCCGCATCCACGT
CGCCTGGCCTGCTGGTCGCCAAGCAGCCGCACGAAACACTCGTTTGCATT
GTCTGCGGATCGTTGCATGCGGATGCCACTGCACTGGCCAGCCATGTGCA
CAGCCAGCACGCAGCGCTGCTGGACACGATGAAGCAGTCCGGAATGAACA
CGGCGCCGGGCGGAGCGATTCCAGACGTCAAGTGCAGTGCAGAGGAGCAG
CAAGCCTATGTGGAGCGGGTTCAGTGCGTCCTGCAGCAGATGAACCATCA
GCAGCAGCATCAACAGCACCAGCAACAACCTCCGCAACAACAACAGCAAC
ATCCGCAACAACAACAGCAGCAGCATCTGCAACAACAGCCGCATCAGATG
CAGCTACCGCAGCAGCCCAAGTTGCCAGCCATGGACTCCACCGGCGAGGA
CGAAGAAGAGCCCGACGAAGCGGAGGAACCGCCGGATGAGGAGGAGGAAC
AAGATGAACCAGAGGAGCCGGCGGAGGTGAAAACGGAAGTGCTGGCAGCA
GAGGACGCTCTCACCAATCCGGGCTATCCCATTCTCGGGCTGCAGGAGGA
ACAGATCCTGCTAGACTCTGACATGTACTACGAGGACTTCGGCGACATGG
ACGTGGGCTGTCAGGAGGAGGTGTTCGGCGACTTTGTCGTCAACGAGGAG
GAGGTTTACACCGATGCGCTCATCTAGAAGCTTTCTAGACCAT
BS10836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12299-RA | 2211 | CG12299-PA | 1..2211 | 17..2227 | 11055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12299-RA | 3310 | CG12299-RA | 436..2647 | 17..2228 | 11060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10737888..10740099 | 17..2228 | 11060 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 02:00:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 115..173 | 78..137 | 126 | 70 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9145..9203 | 78..137 | 126 | 70 | Plus |
BS10836.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:21:37 Download gff for
BS10836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12299-RA | 434..2648 | 17..2232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:19 Download gff for
BS10836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12299-RA | 436..2646 | 17..2227 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:59 Download gff for
BS10836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12299-RA | 434..2644 | 17..2227 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:01 Download gff for
BS10836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12299-RA | 436..2646 | 17..2227 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:01 Download gff for
BS10836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10737888..10740098 | 17..2227 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:19 Download gff for
BS10836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10737888..10740098 | 17..2227 | 100 | | Plus |
BS10836.pep Sequence
Translation from 16 to 2226
> BS10836.pep
MAVQLKQSYHHLPLTITPILQQTHLLPQQAPNPPQQQPQQPQPPDLTFHC
MCCAEFFVHPLALYQHMNTLHPHEPGNGQQEQESPGDESEDYSWIFEPVC
ELAEDGSDSSDGSASSGSDSSSSSDDDDDDDDDDSSSSSSSSSNSSSSSS
SVPTTSNSNTQQSQESVQPLHGLVAGPGYNEFQLQMTDPRESTSIFMVQP
TVSVTPLQQLLPPAPTVSPGLGLQSTPIKRRRGRRSNIGAPVMDPALNGN
QKCFQCTHCEASFPNAGDLSKHVRSHITNKPFQCSICQKTFTHIGSLNTH
IRIHSGEKPYKCELCPKAFTQSSSLMVHMRSHSVRKPHQCVQCDKGFINY
SSLLLHQKTHIAPTETFICPECEREFKAEALLDEHMRMHTQELVYQCAIC
REAFRASSELVQHMKNHMGEKPFTCSLCDRSFTQSGSLNIHMRIHTGEKP
FQCKLCDKCFTQASSLSVHMKIHAGEKPYPCPICGKSYSQQAYLNKHIQA
HQMASAASASTSPGLLVAKQPHETLVCIVCGSLHADATALASHVHSQHAA
LLDTMKQSGMNTAPGGAIPDVKCSAEEQQAYVERVQCVLQQMNHQQQHQQ
HQQQPPQQQQQHPQQQQQQHLQQQPHQMQLPQQPKLPAMDSTGEDEEEPD
EAEEPPDEEEEQDEPEEPAEVKTEVLAAEDALTNPGYPILGLQEEQILLD
SDMYYEDFGDMDVGCQEEVFGDFVVNEEEVYTDALI*
BS10836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12299-PA | 736 | CG12299-PA | 1..736 | 1..736 | 3954 | 100 | Plus |
| crol-PB | 891 | CG14938-PB | 390..860 | 255..665 | 573 | 28.5 | Plus |
| crol-PH | 686 | CG14938-PH | 142..655 | 211..665 | 566 | 27.9 | Plus |
| crol-PC | 756 | CG14938-PC | 268..725 | 255..665 | 561 | 30.1 | Plus |
| crol-PG | 878 | CG14938-PG | 390..847 | 255..665 | 561 | 30.1 | Plus |
| crol-PB | 891 | CG14938-PB | 299..551 | 248..501 | 514 | 35 | Plus |
| crol-PB | 891 | CG14938-PB | 135..551 | 113..548 | 513 | 28.8 | Plus |
| crol-PC | 756 | CG14938-PC | 142..426 | 211..498 | 505 | 32.5 | Plus |
| crol-PB | 891 | CG14938-PB | 362..836 | 255..667 | 502 | 26.3 | Plus |
| crol-PB | 891 | CG14938-PB | 501..858 | 254..637 | 467 | 30.3 | Plus |
