Clone Sequence Records
BS10839.3prime Sequence
938 bp (826 high quality bases) assembled on 2006-04-19
> BS10839.3prime
ATGGTCTAGAAAGCTTTTAAATTCGACTGGAAAGAAAATATATGAGCAGG
CCGATGGCAACACAGCCAAGAGGTAGAAAGCGGCATAGTAACTCTTGTTT
ACTAAATGGGATGTGTTTATGCTTTAAGTGCAGCTCAGAGATTTCTTTGC
GAAGCTGCATGTTGTTAAGCTCCGAATTTTCAAGAAGCTCTTTGTAAACA
ATTAGTTCTTCTTCATTTTCTACGTTGGGGTTATTAATGGTTGCAATGTC
CTCATTCCAAACACCTTCTGTGCTATCTCGATTATCAATTAGCTCTAACG
TCTCACGCGGTAAACTGTTTTCCTCTTCCTGCAAGTTTGTTGCAAAATTG
TGATCAACGCCTTTCTCAAGCTGCTTCTTTAATAGCTCAATTTGTCCTTG
CAGGAAGTGTATTTCACTTGTTAAATGAGCTGTTTTTTTCTTGTACGTAT
CACATTCCTCTTGTAACATATCAATTGCCTGCTCCGTCGGTAATGCATTT
GGAATATTAAGATTTTCCTCAACGTCTACAAGCTTTTCCTTACTTTCCGC
ATTAGGGGCTGACAATTTCGTTGCAGCCGAATCCTCTAAAATTGTATGTG
TAGTTGAAGAATGGTTTTTAAAGTGATCCACGATTTCGGATGTATTTCTG
CTAACGAACTCTGTTGGAACTGAATCGTTTGCCATATCCTCCTCCTCCTT
AACTTTGCATTCAAAGGCTTCATCGTCACCATTAAAAATAGCTTTAAGCA
CTGAAGATCCTTCTTCTCCCTTGCCAAGATCGGAGTTCTTTAGCAATCTT
AAGACGTTCGATTTATAATTGCCTTCTTCNTAATCGGGATTACTTAGTTT
TAGCTTCCTTTTTTTCGTTTCAGACAACACATTTTTAGCTGGTGACACAG
ACAAAATATCATCGTCAGAACTTTCATTATCATCCCTT
BS10839.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17494-PA | 2694 | CG17494-RA | 1773..2694 | 938..17 | 4566 | 99.7 | Minus |
| CG17494-PB | 2784 | CG17494-RB | 1863..2784 | 938..17 | 4566 | 99.7 | Minus |
| CG17494-PC | 2478 | CG17494-RC | 1557..2478 | 938..17 | 4566 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slmap-RD | 3047 | CG17494-RD | 1864..2785 | 938..17 | 4584 | 99.8 | Minus |
| Slmap-RA | 3157 | CG17494-RA | 1974..2895 | 938..17 | 4584 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22584741..22585581 | 857..17 | 4179 | 99.8 | Minus |
| 2L | 23513712 | 2L | 22584601..22584682 | 938..857 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:00:24 has no hits.
BS10839.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:22 Download gff for
BS10839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17494-PC | 1557..2478 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:20:16 Download gff for
BS10839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17494-RA | 1974..2905 | 8..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:32:18 Download gff for
BS10839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slmap-RA | 1974..2905 | 8..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:32:18 Download gff for
BS10839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22584601..22584682 | 857..938 | 100 | -> | Minus |
| 2L | 22584742..22585591 | 8..856 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:20:16 Download gff for
BS10839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22477333..22477414 | 857..938 | 100 | -> | Minus |
| arm_2L | 22477474..22478323 | 8..856 | 99 | | Minus |
BS10839.5prime Sequence
874 bp (873 high quality bases) assembled on 2006-04-19
> BS10839.5prime
GAAGTTATCAGTCGACATGGTCTTGGTGTGCAATGAGTGGTTAAAAAATA
ATGTTGATGAAGACCAGACGTCAAGTTCATTATCGCCGACGCCAGCATCA
GGAGCAGTCGGATCAACGGCATTAAACAGAACTGGCACAACCGACACGGC
CACGGAATTACCTCAGACGACCAGATATCCATCCGGGGAAGAACCTGCTG
TGAAGCCAGAGGAGGCGCAATACGCTTTAAACATGGAAACTGAAAAAAAT
TTGGAGCAGGACAATTTCTTTCATATAATGGACATAAAAGAAGATATGGC
TGATAGTAACAACGAGGCGTCCACGAAGAACCAGGAAAATAATAATATGG
AACTTTGTGATTCCAACACAGTATGTATTGACCGACGTCCGGCTGAAGTT
TCCCAGCATGCTATGAATATGGCCATGAACTCTGTGCTGAATGCAAATAA
CACCGGGGTTGGAGTTCGAGTAACTACTGCCTGCAGTCTGTTTAGCCCAC
TAGGAGTACTAAACAATAGTGCTTTACAAAGGGAGGTGGCATCGGAATGC
GGCACTTTACAAGTCTCTTCAGTGCCCCCAACTTCTGGCGTAGATCTAGA
CATAGGATTGGAGTCTGCCCCAACGCCATGTAAGGGTGCAGCAAAAATCG
TACTCCTATGTGAACCAAAGTCGCACAAGTTTGAAACGAGATCTATATTG
CTGCAGCCCAACCAGGATTGCAAGGTGGGCCGCCTTATAGCTAANAGTAA
GGCGGGTGAGGGGAACGCTATATTTGACTGTAAAGTATTGTCAAGAAACC
ATGCGATTTTGTGGTACACTCCAGACGGTAAATTCTGGGGTCAAGACACA
AAATCCAGCAACGGTACCTTTATT
BS10839.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17494-PA | 2694 | CG17494-RA | 1..823 | 17..839 | 4096 | 99.8 | Plus |
| CG17494-PB | 2784 | CG17494-RB | 91..913 | 17..839 | 4096 | 99.8 | Plus |
| CG17494-PC | 2478 | CG17494-RC | 1..607 | 233..839 | 3016 | 99.8 | Plus |
| CG17494-PA | 2694 | CG17494-RA | 827..858 | 843..874 | 160 | 100 | Plus |
| CG17494-PB | 2784 | CG17494-RB | 917..948 | 843..874 | 160 | 100 | Plus |
| CG17494-PC | 2478 | CG17494-RC | 611..642 | 843..874 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slmap-RD | 3047 | CG17494-RD | 92..949 | 17..874 | 4234 | 99.7 | Plus |
| Slmap-RA | 3157 | CG17494-RA | 202..1059 | 17..874 | 4234 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22579841..22580698 | 17..874 | 4234 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:14:04 has no hits.
BS10839.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:22 Download gff for
BS10839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17494-PB | 84..948 | 6..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:38:44 Download gff for
BS10839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17494-RA | 195..1059 | 6..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:55:12 Download gff for
BS10839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slmap-RA | 195..1059 | 6..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:55:12 Download gff for
BS10839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22579834..22580698 | 6..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:38:44 Download gff for
BS10839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22472566..22473430 | 6..874 | 99 | | Plus |
BS10839.complete Sequence
2726 bp assembled on 2009-08-24
GenBank Submission: KX803726
> BS10839.complete
GAAGTTATCAGTCGACATGGTCTTGGTGTGCAATGAGTGGTTAAAAAATA
ATGTTGATGAAGACCAGACGTCAAGTTCATTATCGCCGACGCCAGCATCA
GGAGCAGTCGGATCAACGGCATTAAACAGAACTGGCACAACCGACACGGC
CACGGAATTACCTCAGACGACCAGATATCCATCCGGGGAAGAACCTGCTG
TGAAGCCAGAGGAGGCGCAATACGCTTTAAACATGGAAACTGAAAAAAAT
TTGGAGCAGGACAATTTCTTTCATATAATGGACATAAAAGAAGATATGGC
TGATAGTAACAACGAGGCGTCCACGAAGAACCAGGAAAATAATAATATGG
AACTTTGTGATTCCAACACAGTATGTATTGACCGACGTCCGGCTGAAGTT
TCCCAGCATGCTATGAATATGGCCATGAACTCTGTGCTGAATGCAAATAA
CACCGGGGTTGGAGTTCGAGTAACTACTGCCTGCAGTCTGTTTAGCCCAC
TAGGAGTACTAAACAATAGTGCTTTACAAAGGGAGGTGGCATCGGAATGC
GGCACTTTACAAGTCTCTTCAGTGCCCCCAACTTCTGGCGTAGATCTAGA
CATAGGATTGGAGTCTGCCCCAACGCCATGTAAGGGTGCAGCAAAAATCG
TACTCCTATGTGAACCAAAGTCGCACAAGTTTGAAACGAGATCTATATTG
CTGCAGCCCAACCAGGATTGCAAGGTGGGCCGCCTTATAGCTAAAAGTAA
GGCGGGTGAGGGGAACGCTATATTTGACTGTAAAGTATTGTCAAGAAACC
ATGCGATTTTGTGGTACACTCCAGACGGTAAATTCTGGGTCAAAGACACA
AAATCCAGCAACGGTACCTTTATTAACGACAACAAGTTGGGTAGTGATCC
AGCGGAACTACATTATGGCGATATTGTGAAGTTCGGCGTTGAGGTAATTG
AGAATTCACGTCAGGAGGTACACGGGTGTATCCTGGCCCGTGTCGCCCTC
TTTCTACCCAATGGACAAGAGGCCATTTCAGTTGAGGCAGAGCAGATGAT
GTTGACTGTGCCTAACCGAATCAGCTTTGATGAAGTGCAGCGCCTAAGCT
CGTTCCTCCAAGAGGCTGCACAAAGGGAAAAATCTCTGAAAGCTAAATTA
AGCAGCTTGCAAGGCGTCCTTGATAACACCAGAAAGAACTCTGCGATGTG
TTGGCAAAGCATGATCACTGAAGACCAATTGCTTCACAAGATAAATATTC
TGGAAAAGAAACTGCAAATGATGGAAAAGAACATTCCAGAGAATGCACTG
CGAAACGAGATTGTAAAGCTTCTTGAGGACAAAACAACGTACCAGTTGAC
TGCCAAAGAGGCCCTGCGGAAGGTCTACCAGGAACGCTGCGATGCTATGC
AAATGCTCTCTAAGATGGAGATGGCCTACGCCACTTCTGAAAACGAGTGC
GGCATACTTCGCGCTCAAGTTCTAACACTAAAGCAGACGCTGACTGATTT
CAATACCCGGTTAGAGGAACTTCAGCAGGAGTACATGGAATTCAAGAAGG
AGTCAGTGCGCCAAGAACAAGAGGCTAAAGAGCAAGAATCACGCAGCTTA
GAGGTGCTAAATGGAAAGCTGACGACGCAGGAGCTCGAGCTTAAGGAGCT
TCGTCTGCAGGTCTCGCGAATCCATCGCGATTTATCTGAGTCTGATACTG
AACATTTGAAGGAGCGAATTGTCTTAAAAAACTTAGATACAATAAATCTT
GACGATTATGACCACGCTCAAGATAGAGCGCTAAATGAAAGGGATGATAA
TGAAAGTTCTGACGATGATATTTTGTCTGTGTCACCAGCTAAAAATGTGT
TGTCTGAAACGAAAAAAAGGAAGCTAAAACTAAGTAATCCCGATTTAGAA
GAAGGCAATTATAAATCGAACGTCTTAAGATTGCTAAAGAACTCCGATCT
TGGCAAGGGAGAAGAAGGATCTTCAGTGCTTAAAGCTATTTTTAATGGTG
ACGATGAAGCCTTTGAATGCAAAGTTAAGGAGGAGGAGGATATGGCAAAC
GATTCAGTTCCAACAGAGTTCGTTAGCAGAAATACATCCGAAATCGTGGA
TCACTTTAAAAACCATTCTTCAACTACACATACAATTTTAGAGGATTCGG
CTGCAACGAAATTGTCAGCCCCTAATGCGGAAAGTAAGGAAAAGCTTGTA
GACGTTGAGGAAAATCTTAATATTCCAAATGCATTACCGACGGAGCAGGC
AATTGATATGTTACAAGAGGAATGTGATACGTACAAGAAAAAAACAGCTC
ATTTAACAAGTGAAATACACTTCCTGCAAGGACAAATTGAGCTATTAAAG
AAGCAGCTTGAGAAAGGCGTTGATCACAATTTTGCAACAAACTTGCAGGA
AGAGGAAAACAGTTTACCGCGTGAGACGTTAGAGCTAATTGATAATCGAG
ATAGCACAGAAGGTGTTTGGAATGAGGACATTGCAACCATTAATAACCCC
AACGTAGAAAATGAAGAAGAACTAATTGTTTACAAAGAGCTTCTTGAAAA
TTCGGAGCTTAACAACATGCAGCTTCGCAAAGAAATCTCTGAGCTGCACT
TAAAGCATAAACACATCCCATTTAGTAAACAAGAGTTACTATGCCGCTTT
CTACCTCTTGGCTGTGTTGCCATCGGCCTGCTCATATATTTTCTTTCCAG
TCGAATTTAAAAGCTTTCTAGACCAT
BS10839.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slmap-RD | 2694 | CG17494-PD | 1..2694 | 17..2710 | 13470 | 100 | Plus |
| Slmap-RA | 2694 | CG17494-PA | 1..2694 | 17..2710 | 13470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slmap-RD | 3047 | CG17494-RD | 92..2785 | 17..2710 | 13470 | 100 | Plus |
| Slmap-RA | 3157 | CG17494-RA | 202..2895 | 17..2710 | 13470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22579841..22581133 | 17..1309 | 6465 | 100 | Plus |
| 2L | 23513712 | 2L | 22584741..22585581 | 1870..2710 | 4205 | 100 | Plus |
| 2L | 23513712 | 2L | 22584120..22584682 | 1308..1870 | 2815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:29:50 has no hits.
BS10839.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:08 Download gff for
BS10839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17494-RB | 92..2783 | 17..2708 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:19 Download gff for
BS10839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17494-RA | 202..2893 | 17..2708 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:58 Download gff for
BS10839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slmap-RA | 202..2893 | 17..2708 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:58 Download gff for
BS10839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22579841..22581133 | 17..1309 | 100 | -> | Plus |
| 2L | 22584122..22584682 | 1310..1870 | 100 | -> | Plus |
| 2L | 22584742..22585579 | 1871..2708 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:19 Download gff for
BS10839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22472573..22473865 | 17..1309 | 100 | -> | Plus |
| arm_2L | 22476854..22477414 | 1310..1870 | 100 | -> | Plus |
| arm_2L | 22477474..22478311 | 1871..2708 | 100 | | Plus |
BS10839.pep Sequence
Translation from 16 to 2709
> BS10839.pep
MVLVCNEWLKNNVDEDQTSSSLSPTPASGAVGSTALNRTGTTDTATELPQ
TTRYPSGEEPAVKPEEAQYALNMETEKNLEQDNFFHIMDIKEDMADSNNE
ASTKNQENNNMELCDSNTVCIDRRPAEVSQHAMNMAMNSVLNANNTGVGV
RVTTACSLFSPLGVLNNSALQREVASECGTLQVSSVPPTSGVDLDIGLES
APTPCKGAAKIVLLCEPKSHKFETRSILLQPNQDCKVGRLIAKSKAGEGN
AIFDCKVLSRNHAILWYTPDGKFWVKDTKSSNGTFINDNKLGSDPAELHY
GDIVKFGVEVIENSRQEVHGCILARVALFLPNGQEAISVEAEQMMLTVPN
RISFDEVQRLSSFLQEAAQREKSLKAKLSSLQGVLDNTRKNSAMCWQSMI
TEDQLLHKINILEKKLQMMEKNIPENALRNEIVKLLEDKTTYQLTAKEAL
RKVYQERCDAMQMLSKMEMAYATSENECGILRAQVLTLKQTLTDFNTRLE
ELQQEYMEFKKESVRQEQEAKEQESRSLEVLNGKLTTQELELKELRLQVS
RIHRDLSESDTEHLKERIVLKNLDTINLDDYDHAQDRALNERDDNESSDD
DILSVSPAKNVLSETKKRKLKLSNPDLEEGNYKSNVLRLLKNSDLGKGEE
GSSVLKAIFNGDDEAFECKVKEEEDMANDSVPTEFVSRNTSEIVDHFKNH
SSTTHTILEDSAATKLSAPNAESKEKLVDVEENLNIPNALPTEQAIDMLQ
EECDTYKKKTAHLTSEIHFLQGQIELLKKQLEKGVDHNFATNLQEEENSL
PRETLELIDNRDSTEGVWNEDIATINNPNVENEEELIVYKELLENSELNN
MQLRKEISELHLKHKHIPFSKQELLCRFLPLGCVAIGLLIYFLSSRI*
BS10839.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slmap-PD | 897 | CG17494-PD | 1..897 | 1..897 | 4577 | 100 | Plus |
| Slmap-PA | 897 | CG17494-PA | 1..897 | 1..897 | 4577 | 100 | Plus |
| zip-PH | 1964 | CG15792-PH | 925..1452 | 340..842 | 165 | 22.4 | Plus |
| zip-PG | 1971 | CG15792-PG | 917..1444 | 340..842 | 165 | 22.4 | Plus |
| zip-PE | 1971 | CG15792-PE | 917..1444 | 340..842 | 165 | 22.4 | Plus |
