Clone Sequence Records
BS10840.3prime Sequence
942 bp (814 high quality bases) assembled on 2006-04-19
> BS10840.3prime
ATGGTCTAGAAAGCTTTTAATGAAACTCATCCCCGCTGTTGGGCAGCATG
GAAATAGCTGATTGAGCTTGCATTTGGGCCTTATTGAAGCTATTGACAGC
TCCAGCGTTGTTCTGATGAAGCGAATTCAGCTGTTGGGGCTGCTGATGGG
GATGTTGCTGCTGAGACTGTTGGTATTGCTGCTTGTACTGCGTGGCGAAG
TGCGGCTGGTTGGACTCAAAAGATTGGAAGTTTTGGTTATCACCGAATCT
CAAATTGGAATGATGCTTCTGCGGCTGTCCATTCATAGGATAACCAGAGG
CGTGGTTATTGCCACCGCCAGAGATCAAGGCATGGAGCAAGGCATTCGAG
TTGGCATCTGGTCGAGCCTGGCGTTGCTGGCCACGGTTTAGATATTGCTG
CTGTGCCTGATGCTTGGCACCGCCATTGATAAGCTTCGAGGTCTGCTCCT
CAATTTTTCGCTTCATTACGGCGTTTCGCATTATCACATTGGCATGCGCT
TGCAAGTCCTCCTGCGACAGTTGGTGCGGCGCCTGCGTCTGTGGATTATG
CTGCGGCTGCTGCCTGGCTGCAAGAGTCTGCTGGACAATGGCCAAGTTGT
GGAGATTCTGCAACTGGCTGGCGATGACCGTGCTTGAGAGCATGTCCAGC
TGCTGCTTGTGCTGCTGCTGCTGCTGCTGGGTGTTGGTGAACTGCAATAC
AGCAGTGATGGCCTCGCGATCCATGTCCGTCAAGCGTGGGTTGGCCAACT
GCACCAGCAATCCGTGCTTGGATATTTCCCCTTTAGTCAGACGGAGCAGT
AGCAATTGGGTGTCGGCCCGGCCGAGGATCGCCTTCAGCTGCAGGCTCGC
CAAAAAGGCGGTATGTTGCTGCTGCTGCTGTATGATGAGGTGCTGCTTCT
GTTGCTGCTGCTGGTACTGCTGTTGCTGCATTATAAAGTTGG
BS10840.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11181-PA | 3399 | cup-RA | 2474..3399 | 942..17 | 4630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34310-RD | 4306 | CG34310-RD | 2915..3840 | 942..17 | 4630 | 100 | Minus |
| CG34310-RC | 4002 | CG34310-RC | 2611..3536 | 942..17 | 4630 | 100 | Minus |
| cup-RC | 4306 | CG11181-RC | 2915..3840 | 942..17 | 4630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6669762..6670513 | 782..31 | 3760 | 100 | Minus |
| 2L | 23513712 | 2L | 6669529..6669691 | 942..780 | 815 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:02:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2712..2924 | 262..55 | 196 | 57.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6882 | 183..63 | 170 | 64 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6890 | 191..107 | 166 | 67.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6791 | 183..130 | 162 | 77.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2440..2517 | 183..107 | 153 | 67.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6820 | 187..81 | 153 | 67 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6897 | 190..82 | 151 | 65.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6852 | 183..111 | 149 | 67.1 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1176 | 191..108 | 149 | 65.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2391 | 191..130 | 148 | 71 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1587 | 195..115 | 139 | 66.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1540..1591 | 183..133 | 131 | 75 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6834..6891 | 183..126 | 128 | 69 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2385 | 183..107 | 127 | 67.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6826 | 179..55 | 125 | 62.2 | Minus |
BS10840.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:21 Download gff for
BS10840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-PA | 2474..3399 | 17..942 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:16:23 Download gff for
BS10840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11181-PA | 2474..3399 | 17..942 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:54:30 Download gff for
BS10840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 2611..3542 | 11..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:01 Download gff for
BS10840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RC | 2915..3846 | 11..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:01 Download gff for
BS10840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6669529..6669690 | 781..942 | 100 | -> | Minus |
| 2L | 6669764..6670513 | 31..780 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:54:30 Download gff for
BS10840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6669529..6669690 | 781..942 | 100 | -> | Minus |
| arm_2L | 6669764..6670513 | 31..780 | 100 | -> | Minus |
BS10840.5prime Sequence
896 bp (867 high quality bases) assembled on 2006-04-19
> BS10840.5prime
GAAGTTATCAGTCGACATGGACCCTATGAAAGAGGAGGCGATCGAATTGA
ATGGCCATGCTATGCAAATGGCCGAAGCTGAGCAAGAAAATGGCGCTGGC
GCCCTGAAAATTGCCACCAATGCGGGTGCAACCGATCGTCCAGCGCATCA
GCAGCTTCCGCTGCCAGTCGAAGATCAGCAGGATGAGGTGCTGACCCCCG
CTGAGAAGGGCAAGTTCGAGTACCCGCCCCCTCCACCGCCACCAACTCCA
GTCCAGGCTCCGCTAGCCACCAAGGCCACCGCTCTGAATGCCAGTCAAGA
GCATGACGACGACGAGGCCAACTCCGAGAAGTGGGAGGATCCGTGCGCTC
CGCCCCCGCCTCCTCCGCTGCCGACTAGCGCTTTCCTGGCCACCGGACTG
GGCTACCTCAAGCTGCCCGCCTTCAAGCTGAAGGACGCACTGGAGAAGGC
CATCACCAAGTTGGAGGCCAACAAGCGGACGCTAAAGGCCAGCCCTGAGT
CTTCTCGTTCCATCAAAAACAAGAATGTGGTGGCCCTGGAGATGTTACCC
AGGCGCTCAAACCCAGAAACGATCGGCGATGGATCCATGTTGGCATCCAC
ATCCACGGCTGTTATGCTGCAGACCAAAAAGCCCGCCGTTATTGTGGAGA
TGGAGAGGCGTTGTAAGATCATCAATTTACTGGCCAAACAGAATCAAATC
CTCGAATCCATTTCGGGGGAGGCCATTCCGATGCATGGACCCTCGAAGCA
TCTGCACGAGGACGAGGGTCTGACCCTGCAAGTTCTCTCGGCCCGAGCAT
CCACACCGTACACACAGCCCTCCAGCATGTTGTCCTGCACGGCCGTTAGT
TGTGACCTGGAGCACGATTCGCCGCGGAAAGCAGTGGCCCAGCAGG
BS10840.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11181-PA | 3399 | cup-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34310-RD | 4306 | CG34310-RD | 442..1314 | 17..889 | 4320 | 99.8 | Plus |
| CG34310-RC | 4002 | CG34310-RC | 138..1010 | 17..889 | 4320 | 99.8 | Plus |
| cup-RC | 4306 | CG11181-RC | 442..1314 | 17..889 | 4320 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6664105..6664587 | 17..499 | 2415 | 100 | Plus |
| 2L | 23513712 | 2L | 6664929..6665320 | 498..889 | 1915 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:35:34 has no hits.
BS10840.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:22 Download gff for
BS10840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-PA | 1..879 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:16:25 Download gff for
BS10840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11181-PA | 1..879 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:31:01 Download gff for
BS10840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 128..1016 | 7..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:50 Download gff for
BS10840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RC | 432..1320 | 7..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:50 Download gff for
BS10840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6664095..6664587 | 7..499 | 99 | -> | Plus |
| 2L | 6664931..6665326 | 500..896 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:31:01 Download gff for
BS10840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6664095..6664587 | 7..499 | 99 | -> | Plus |
| arm_2L | 6664931..6665326 | 500..896 | 98 | | Plus |
BS10840.complete Sequence
3431 bp assembled on 2012-04-25
GenBank Submission: KX804947
> BS10840.complete
GAAGTTATCAGTCGACATGGACCCTATGAAAGAGGAGGCGATCGAATTGA
ATGGCCATGCTATGCAAATGGCCGAAGCTGAGCAAGAAAATGGCGCTGGC
GCCCTGAAAATTGCCACCAATGCGGGTGCAACCGATCGTCCAGCGCATCA
GCAGCTTCCGCTGCCAGTCGAAGATCAGCAGGATGAGGTGCTGACCCCCG
CTGAGAAGGGCAAGTTCGAGTACCCGCCCCCTCCACCGCCACCAACTCCA
GTCCAGGCTCCGCTAGCCACCAAGGCCACCGCTCTGAATGCCAGTCAAGA
GCATGACGACGACGAGGCCAACTCCGAGAAGTGGGAGGATCCGTGCGCTC
CGCCCCCGCCTCCTCCGCTGCCGACTAGCGCTTTCCTGGCCACCGGACTG
GGCTACCTCAAGCTGCCCGCCTTCAAGCTGAAGGACGCACTGGAGAAGGC
CATCACCAAGTTGGAGGCCAACAAGCGGACGCTAAAGGCCAGCCCTGAGT
CTTCTCGTTCCATCAAAAACAAGAATGTGGTGGCCCTGGAGATGTTACCC
AGGCGCTCAAACCCAGAAACGATCGGCGATGGATCCATGTTGGCATCCAC
ATCCACGGCTGTTATGCTGCAGACCAAAAAGCCCGCCGTTATTGTGGAGA
TGGAGAGGCGTTGTAAGATCATCAATTTACTGGCCAAACAGAATCAAATC
CTCGAATCCATTTCGGGGGAGGCCATTCCGATGCATGGACCCTCGAAGCA
TCTGCACGAGGACGAGGGTCTGACCCTGCAAGTTCTCTCGGCCCGAGCAT
CCACACCGTACACACAGCCCTCCAGCATGTTGTCCTGCACGGCCGTTAGT
TGTGACCTGGAGCACGATTCGCCGCGGAAGCAAGTGGCCAGCAAGGAGGC
CGTGCCGGAGCAGCAGTCTAGTCAGGTGCAGCAAAAGCGTCCACCCAGCA
CAGGCATTCACAAGCCAGGAAGTCTGCGAGCACCCAAGGCTGTTCGTCCT
ACTACTGCTCCGGTGGTCAGCAGCAAGCCGGTCAAGAGCTATACCCGCTC
CCGCCTGATGGACATTCGCAACGGGATGTTCAATGCCCTGATGCACAGGT
CCAAGGAGAGCTTTGTGATGCCTCGCATCGCCACCTGCGACGACATTGAG
TTGGAGGGAAGGCTTCGCCGCATGAATATTTGGCGCACCTCGGACGGCAC
AAGATTCCGGACCCGCTCCACCACAGCTAACTTAAACATGAACAACAACA
ACAACAATGAGTGCATGCCTGCCTTCTTCAAAAACAAAAATAAGCCGAAC
CTAATCAGTGACGAGTCCATCATCCAGAGCCAACCGCCCCAGCCGCAAAC
GGAGTTCCAAGATCCGGCCATTGTTAACCAAAGACGCATTGGCAGCGGTC
GCTTAAACCATTCCAAGTGGGGTTACAACGACGAAGACTACCACTCGTAC
CACAATGGCAAGTCGCAGCATATGGAGGAGGTCAACTCGAAGAACAGCAA
AAACATGACGGTGCTGCAGTTCTTCGACAACGGCGAGATCAGCAGTCAGC
CTCAAAGACGGCCGAACACTCCTGTGATGGGGATGTCTATCAATCGATCC
GAGAACGACACCCTGCACTCGAACGAGTCCAGTGAAGATTTGAGTCGCGC
CAACGAGAACTATGTAAAGCGCGTAATGTCTGGATTCCTGGTTGTATCGA
AGCCCAAGTCACGAGATGTCGAGGATAGACATCACCGGCGGTACAGGAAC
CAGAACGAGGAGCCTGAGTGGTTTAGCTGTGGACCCACGTCTAGACTGGA
CACTATAGAGTTGTGTGGGTTCGATGAGGACGAGGAGAAAATGCTAAAGG
AGGGCAACAAAAACCACGGATTAGGCGAAACAGAGCGAGAAACGTCAAAA
CAAAAGATGGACCATAAGTACAAATGGACGCATGCGGAGCCGATGGGTCG
AAGCAAATACATGCCCAAACACGACACTAACAATAATCATAACGTGGAGA
ACATGAATAATGTTATGGCTACCGAGCATCAGCAACAAAAGGAAGAGAAA
CGCCCAGGCAGTGGCCGTTCGTTTCAGTTTGATAAGTTCAATCAAAGCCA
ACAGAATTACGAGAGTAGCAGTTATGTTAATCACCAACAGCCGCCGCAAA
CGCAGCCTCAGCAAATGCAGCAGCAGTCGAACACAAACACGAACAACTCT
AAATTCATGTCATTCTTTGCCAATGAGGGGAACTCCTCGTCTTCTTCGCT
GAACGAGTTTTTCAAGCAGGCCATTAACCAGGGTCATGGCAACAATCCGG
AGCAGCCCAAATCGTTGGGCCACATCGGACAGATGCCTTCGGTGGATCAG
CTGGAGGCCAAATGGCGTCGAAACTCACTGAACAATGTTGGCGAGACTGC
CAACAAGCAGACTGATAACTTCCAGAAGCTAATTGGGTCTCTTTCTTCGG
CTAAGCCACAGTCACAGGCGGTTGGCTATGATGCCATCTCCAACTTTATA
ATGCAGCAACAGCAGTACCAGCAGCAGCAACAGAAGCAGCACCTCATCAT
ACAGCAGCAGCAGCAACATACCGCCTTTTTGGCGAGCCTGCAGCTGAAGG
CGATCCTCGGCCGGGCCGACACCCAATTGCTACTGCTCCGTCTGACTAAA
GGGGAAATATCCAAGCACGGATTGCTGGTGCAGTTGGCCAACCCACGCTT
GACGGACATGGATCGCGAGGCCATCACTGCTGTATTGCAGTTCACCAACA
CCCAGCAGCAGCAGCAGCAGCACAAGCAGCAGCTGGACATGCTCTCAAGC
ACGGTCATCGCCAGCCAGTTGCAGAATCTCCACAACTTGGCCATTGTCCA
GCAGACTCTTGCAGCCAGGCAGCAGCCGCAGCATAATCCACAGACGCAGG
CGCCGCACCAACTGTCGCAGGAGGACTTGCAAGCGCATGCCAATGTGATA
ATGCGAAACGCCGTAATGAAGCGAAAAATTGAGGAGCAGACCTCGAAGCT
TATCAATGGCGGTGCCAAGCATCAGGCACAGCAGCAATATCTAAACCGTG
GCCAGCAACGCCAGGCTCGACCAGATGCCAACTCGAATGCCTTGCTCCAT
GCCTTGATCTCTGGCGGTGGCAATAACCACGCCTCTGGTTATCCTATGAA
TGGACAGCCGCAGAAGCATCATTCCAATTTGAGATTCGGTGATAACCAAA
ACTTCCAATCTTTTGAGTCCAACCAGCCGCACTTCGCCACGCAGTACAAG
CAGCAATACCAACAGTCTCAGCAGCAACATCCCCATCAGCAGCCCCAACA
GCTGAATTCGCTTCATCAGAACAACGCTGGAGCTGTCAATAGCTTCAATA
AGGCCCAAATGCAAGCTCAATCAGCTATTTCCATGCTGCCCAACAGCGGG
GATGAGTTTCATTAAAAGCTTTCTAGACCAT
BS10840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cup-RC | 3354 | CG11181-PC | 1..3354 | 62..3415 | 16770 | 100 | Plus |
| cup-RB | 3354 | CG11181-PB | 1..3354 | 62..3415 | 16770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34310-RD | 4306 | CG34310-RD | 442..3840 | 17..3415 | 16995 | 100 | Plus |
| CG34310-RC | 4002 | CG34310-RC | 138..3536 | 17..3415 | 16995 | 100 | Plus |
| cup-RC | 4306 | CG11181-RC | 442..3840 | 17..3415 | 16995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6664929..6665792 | 498..1361 | 4320 | 100 | Plus |
| 2L | 23513712 | 2L | 6669762..6670513 | 2650..3401 | 3760 | 100 | Plus |
| 2L | 23513712 | 2L | 6668944..6669691 | 1905..2652 | 3740 | 100 | Plus |
| 2L | 23513712 | 2L | 6668342..6668887 | 1361..1906 | 2730 | 100 | Plus |
| 2L | 23513712 | 2L | 6664105..6664587 | 17..499 | 2415 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2712..2924 | 3170..3377 | 196 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6882 | 3249..3369 | 170 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6890 | 3241..3325 | 166 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6791 | 3249..3302 | 162 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2440..2517 | 3249..3325 | 153 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6820 | 3245..3351 | 153 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6897 | 3242..3350 | 151 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6852 | 3249..3321 | 149 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1176 | 3241..3324 | 149 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2391 | 3241..3302 | 148 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1587 | 3237..3317 | 139 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1540..1591 | 3249..3299 | 131 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6834..6891 | 3249..3306 | 128 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2385 | 3249..3325 | 127 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6826 | 3253..3377 | 125 | 62.2 | Plus |
BS10840.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:23:57 Download gff for
BS10840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 131..3545 | 7..3421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:19 Download gff for
BS10840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 141..3537 | 17..3413 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:21 Download gff for
BS10840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 138..3534 | 17..3413 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:07 Download gff for
BS10840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 141..3537 | 17..3413 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:08 Download gff for
BS10840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RC | 442..3838 | 17..3413 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:08 Download gff for
BS10840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6664105..6664587 | 17..499 | 100 | -> | Plus |
| 2L | 6664931..6665791 | 500..1360 | 100 | -> | Plus |
| 2L | 6668342..6668887 | 1361..1906 | 100 | -> | Plus |
| 2L | 6668946..6669690 | 1907..2651 | 100 | -> | Plus |
| 2L | 6669764..6670513 | 2652..3401 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:21 Download gff for
BS10840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6664105..6664587 | 17..499 | 100 | -> | Plus |
| arm_2L | 6664931..6665791 | 500..1360 | 100 | -> | Plus |
| arm_2L | 6668342..6668887 | 1361..1906 | 100 | -> | Plus |
| arm_2L | 6668946..6669690 | 1907..2651 | 100 | -> | Plus |
| arm_2L | 6669764..6670513 | 2652..3401 | 100 | -> | Plus |
BS10840.pep Sequence
Translation from 16 to 3414
> BS10840.pep
MDPMKEEAIELNGHAMQMAEAEQENGAGALKIATNAGATDRPAHQQLPLP
VEDQQDEVLTPAEKGKFEYPPPPPPPTPVQAPLATKATALNASQEHDDDE
ANSEKWEDPCAPPPPPPLPTSAFLATGLGYLKLPAFKLKDALEKAITKLE
ANKRTLKASPESSRSIKNKNVVALEMLPRRSNPETIGDGSMLASTSTAVM
LQTKKPAVIVEMERRCKIINLLAKQNQILESISGEAIPMHGPSKHLHEDE
GLTLQVLSARASTPYTQPSSMLSCTAVSCDLEHDSPRKQVASKEAVPEQQ
SSQVQQKRPPSTGIHKPGSLRAPKAVRPTTAPVVSSKPVKSYTRSRLMDI
RNGMFNALMHRSKESFVMPRIATCDDIELEGRLRRMNIWRTSDGTRFRTR
STTANLNMNNNNNNECMPAFFKNKNKPNLISDESIIQSQPPQPQTEFQDP
AIVNQRRIGSGRLNHSKWGYNDEDYHSYHNGKSQHMEEVNSKNSKNMTVL
QFFDNGEISSQPQRRPNTPVMGMSINRSENDTLHSNESSEDLSRANENYV
KRVMSGFLVVSKPKSRDVEDRHHRRYRNQNEEPEWFSCGPTSRLDTIELC
GFDEDEEKMLKEGNKNHGLGETERETSKQKMDHKYKWTHAEPMGRSKYMP
KHDTNNNHNVENMNNVMATEHQQQKEEKRPGSGRSFQFDKFNQSQQNYES
SSYVNHQQPPQTQPQQMQQQSNTNTNNSKFMSFFANEGNSSSSSLNEFFK
QAINQGHGNNPEQPKSLGHIGQMPSVDQLEAKWRRNSLNNVGETANKQTD
NFQKLIGSLSSAKPQSQAVGYDAISNFIMQQQQYQQQQQKQHLIIQQQQQ
HTAFLASLQLKAILGRADTQLLLLRLTKGEISKHGLLVQLANPRLTDMDR
EAITAVLQFTNTQQQQQQHKQQLDMLSSTVIASQLQNLHNLAIVQQTLAA
RQQPQHNPQTQAPHQLSQEDLQAHANVIMRNAVMKRKIEEQTSKLINGGA
KHQAQQQYLNRGQQRQARPDANSNALLHALISGGGNNHASGYPMNGQPQK
HHSNLRFGDNQNFQSFESNQPHFATQYKQQYQQSQQQHPHQQPQQLNSLH
QNNAGAVNSFNKAQMQAQSAISMLPNSGDEFH*
BS10840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cup-PC | 1117 | CG11181-PC | 1..1117 | 16..1132 | 5841 | 100 | Plus |
| cup-PB | 1117 | CG11181-PB | 1..1117 | 16..1132 | 5841 | 100 | Plus |
| 4E-T-PH | 979 | CG32016-PH | 195..877 | 439..1094 | 204 | 20.7 | Plus |
| 4E-T-PG | 1010 | CG32016-PG | 195..908 | 439..1094 | 185 | 20.9 | Plus |
| 4E-T-PC | 1010 | CG32016-PC | 195..908 | 439..1094 | 185 | 20.9 | Plus |
