Clone BS10841 Report

Search the DGRC for BS10841

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG3356-RA
Protein status:BS10841.pep: full length peptide match
Sequenced Size:3401

Clone Sequence Records

BS10841.complete Sequence

3401 bp assembled on 2009-12-07

GenBank Submission: KX800728

> BS10841.complete
GAAGTTATCAGTCGACATGTTCGGATTCGACGGCGAGTACCGCCGCAGGC
CTGTGCAAAGTCTGGGCGGAGCCTCGCACACCTGCGACCGGGACACTGTG
ATCCGGAAGGCGGCCCTGGAGCGCCAGAAGCGCAACGAGCTGCGCCAGAA
GGAGAACGGGGCAGTGGTCCTGCAGTCTTACGCCCGCTCATTCATCCACC
GCCAGCGGCGCAAGCGGGCGGAACGGGAAGTTTTCGACATCTACCTAATG
GGCCACAAGGATGGCATCGTGGAGGACGAGAGCCTTACCTTCCTCTTGCG
GCGCCTCAACTTCTTCTACAGCATCCGGGAGGCCAAGGACAGCGAGCGAC
TGATCGAAGTTTGTCAGCAGATCCTTCGCCAGCCCGCTCGTCTGCTTCAG
CATTCCTCCCCTGACTCATTGTGGCTTCTGAGACTGTGCAAGCTGCTGGA
CACTTGCCTGCTACAGCTTAGCCTGTCGCACACGGCCCAAGCCATTCCCC
TACGCATGCTGGAAACATTTACCACCGTATCCTCTGTCCAGCAATATATG
AAGGATGAGGCTGTGTTGTTTCAGTATATGGAGCGCGTCTTTGGCTTCCT
GATTGCCCGCAATTACTTTGTGCGGCTGCGACGGCTGCTGGACGACAAGT
GTCCGCCGCTGGACGGAGAGACCCTGCATGCCCCGAGTCCGCTGGCTGAG
GCACTGCTTCAGTTGTTGCTACGTCCCCTGGAAGTTGCCAAAAGGGCATC
CGCGGGCGGCCAGATGTCCTCTATGTCGATGGCGGTTTGCCGGAACTTCA
CTCGAGACATCTTGGCCACGCCGCACACGGATCCTCTGCGATACTTTGTG
CTACCCTGCTTTGCCCTGAATGTGGACTTCCCATTTGACTTGTTAATGCG
TTCGCTCTACGACGCACTTGAGTCAGCTGGACCAGCAGAATCGGACAGCA
CGTCCAGCCGGCGCAGCTTTCTCTTCTACGGTGTAGAAACAGGCCACAAG
ACTACGCGGATGGACTCGATTTTCTCGTCGTTTCTGCTCAACTCCCTCAT
GGTTCTCGATCGTAGGCAATTGGCCACCCTGCATCAGAGCCCGCTGCTAG
TGATCTACGTCCGCCTCATTGCCGAAATGATGCCCAACATTCTGCAGCTG
CCCAAGTCAACGCTTCGCGGCCATGCTAATGCCCCACATCGTCACAGGGA
CGGCGATGACGATTCCGAGGAATCGGAGGATGAGGATGAAGAGCTGCCAG
CGGCTCGAACCCTGGACTACGATATGGAACAGACTTGCCGGACTAGCGGT
GAACTGAGTGTCAAAGAGCGCGAGTGTCTGCTGGAGTCCATTGCCATACT
GAACGAAACGGAGCGGGTGGACTTTATTGTCCAGCAGCTAGATCCGCACA
TTGAGAACACTCACCTCATCTATGCGCTATGCGAGATCTGTCACAATCTG
ATGATATACAACAAGCATGCGGTCTTCGAGTACAAACTACTCTATACGTT
GGCTTTTACTCCGAAATTCATACGGGCTGTGTGGTTTAAGTTGGCTGCAG
AGTCCACTCAACTAGGTTTCTCAGCTCCACTAACCCTTATTTCCAAGGGT
GTTGTCCCCAAACATCAAGGAGTGGATCGAACTATTCCTCTTTTGGCCAC
TTTCTGCATGCTGTTTGGCCGCCTGCTGCCCACGCTGCATGATGTTGAGT
TCGTGGAGAACAAGTTGCTGCTGCAGGTCCATAGCACCATCAACCACGTG
CGACTGATGCCATTTTCCATAGCGGAAATTATACAAATGTCTAAGACGCT
AAAGGACATCAGTATGGGCCTAGTGGAACTGGCTTTTCCGGAGACCCGTA
GCAATCTGGCCAACTACCGCAAGGTCCTGGGTCACACGGAGGCCGACGAC
AAGAAGTTGCGGCACCAGAAACAAATCTGGGCCAACCTGCTCAATGTGGT
CGTCTTTGTGCTCAACCAGATCCACACTCGCGACCTGCGCTTAGGGTTCT
GTCCGGAGGATCACTGGACCGTCACCAGGCTAGACTTACCACTGGATAGG
CCCACAGATCTTCCGCTGACCCATAGCAGTCGTCTTAGGGGCATTCGACC
CTTTCAGCCGATTCGAGACTTTACTCGGGAGGACTTCGAGAACGGTCCAC
CCATGTCCACGAAACAGATCCGCTCGATAACCATTTTGCGGGAGATCCCC
TTTGTGGTACCCTTCAACAAGCGGGTTAGCATTCTGCAGAGCTTGGTTGC
TGCCAGCAAGATGCGGGTGCAGGGCAATATGCAAGCCTTTCTCCAAGGGC
CCTCCGTTCTGATCACTGTCAGGCGGTCGCATCTTTACGAGGACGCATAC
GACAAGTTACGTCCGGATAATGAGCCGGATCTGCGCTTTAAGTTCCGTAT
ACAGTTTGTTTCCTCGCTCGGACTCGATGAGGCAGGCATCGATGGTGGTG
GAGTTTTTCGCGAGTTTCTTTCGGAACTAATTAAAACTGCCTTTGATCCC
AACCGTGGATTCTTTATGGTAACCACGGACAACAAGCTTTATCCCAATCC
AAATGTCGCCGATCTGTTCGAAGACTATGAGAAACACTACTATTTCATTG
GCCGCATCCTGGGCAAGTCCATATATGAAAACCTTTTGGTCGAACTTCCA
TTGGCCGAGTTCTTCCTAACCAAGCTGGCTGGCAAATACTCCGATGTGGA
CATCCACCAGTTGGCCTCCTTGGACCCGGAGCTCTACCGCAATCTACTTT
ACTTGAAGGACTACTCGGGCGATGTAAGTGAACTAAACTTGGACTTCACC
GTGGCGAGCAGTTCGCTGGGTCAGACGCAGATTGTGGAGTTAAAGCCTCA
GGGCCAGAGCATTCCCGTGACGAACTCAAACCGCATTGAGTACCTGCAAT
TGATTGCCGACTACAAGCTTAACGTGCAGATACGTCGTCACTGCAACGCC
TTCCGAAAGGGTCTATCCAACGTCCTGCCCATCGAATGGCTGTACATGTT
CAGCAATAAGGAGCTGCAAATACTCATCTCGGGTGCCGAGATACCCATTG
ACCTGGAGGATCTAAAGAAGCACTGTGAATACGGCGGTGAATTCTCTCCA
GAGCACCCCTCGATTGTGACATTCTGGGAGGTTTTGGAAGGTTTCGATGA
TATGCAGCGCCGGCAGCTGCTAAAATTTGTCACCAGCTGCTCGAGGCCAC
CGTTGTTGGGCTTTAAGGACCTGGACCCACCTTTCTTTATCCAAAACACG
GGAGATATGGAACGTCTGCCCACGGCCAGCACCTGCACGAATCTGCTAAA
ACTTCCGCCCTTCAAAACCGTAGAACAAATGCGCGAAAAGCTGCTCTATG
CCATACAGTCTGGCGCTGGCTTTGAACTAAGCTAAAAGCTTTCTAGACCA
T

BS10841.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3356-RA 3369 CG3356-PA 1..3369 17..3385 16845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3356-RA 3956 CG3356-RA 277..3646 16..3385 16850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24199925..24200689 1608..2372 3825 100 Plus
2R 25286936 2R 24198495..24199216 352..1073 3610 100 Plus
2R 25286936 2R 24200951..24201651 2518..3218 3505 100 Plus
2R 25286936 2R 24199276..24199688 1073..1485 2065 100 Plus
2R 25286936 2R 24198100..24198436 16..352 1685 100 Plus
2R 25286936 2R 24201708..24201877 3216..3385 850 100 Plus
2R 25286936 2R 24200747..24200893 2372..2518 735 100 Plus
2R 25286936 2R 24199745..24199866 1486..1607 610 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:04:35 has no hits.

BS10841.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:18 Download gff for BS10841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 225..3586 22..3383 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:15 Download gff for BS10841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 283..3644 22..3383 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:56 Download gff for BS10841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 225..3586 22..3383 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:29 Download gff for BS10841.complete
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 283..3644 22..3383 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:29 Download gff for BS10841.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24198106..24198436 22..352 100 -> Plus
2R 24198496..24199216 353..1073 100 -> Plus
2R 24199277..24199688 1074..1485 100 -> Plus
2R 24199745..24199866 1486..1607 100 -> Plus
2R 24199925..24200689 1608..2372 100 -> Plus
2R 24200748..24200892 2373..2517 100 -> Plus
2R 24200951..24201650 2518..3217 100 -> Plus
2R 24201710..24201875 3218..3383 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:15 Download gff for BS10841.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20085629..20085959 22..352 100 -> Plus
arm_2R 20086019..20086739 353..1073 100 -> Plus
arm_2R 20086800..20087211 1074..1485 100 -> Plus
arm_2R 20087268..20087389 1486..1607 100 -> Plus
arm_2R 20087448..20088212 1608..2372 100 -> Plus
arm_2R 20088271..20088415 2373..2517 100 -> Plus
arm_2R 20088474..20089173 2518..3217 100 -> Plus
arm_2R 20089233..20089398 3218..3383 100   Plus

BS10841.3prime Sequence

898 bp (844 high quality bases) assembled on 2006-04-19

> BS10841.3prime
ATGGTCTAGAAAGCTTTTAGCTTAGTTCAAAGCCAGCGCCAGACTGTATG
GCATAGAGCAGCTTTTCGCGCATTTGTTCTACGGTTTTGAAGGGCGGAAG
TTTTAGCAGATTCGTGCAGGTGCTGGCCGTGGGCAGACGTTCCATATCTC
CCGTGTTTTGGATAAAGAAAGGTGGGTCCAGGTCCTTAAAGCCCAACAAC
GGTGGCCTCGAGCAGCTGGTGACAAATTTTAGCAGCTGCCGGCGCTGCAT
ATCATCGAAACCTTCCAAAACCTCCCAGAATGTCACAATCGAGGGGTGCT
CTGGAGAGAATTCACCGCCGTATTCACAGTGCTTCTTTAGATCCTCCAGG
TCAATGGGTATCTCGGCACCCGAGATGAGTATTTGCAGCTCCTTATTGCT
GAACATGTACAGCCATTCGATGGGCAGGACGTTGGATAGACCCTTTCGGA
AGGCGTTGCAGTGACGACGTATCTGCACGTTAAGCTTGTAGTCGGCAATC
AATTGCAGGTACTCAATGCGGTTTGAGTTCGTCACGGGAATGCTCTGGCC
CTGAGGCTTTAACTCCACAATCTGCGTCTGACCCAGCGAACTGCTCGCCA
CGGTGAAGTCCAAGTTTAGTTCACTTACATCGCCCGAGTAGTCCTTCAAG
TAAAGTAGATTGCGGTAGAGCTCCGGGTCCAAGGAGGCCAACTGGTGGAT
GTCCACATCGGAGTATTTGCCAGCCAGCTTGGTTAGGAAGAACTCGGCCA
ATGGAAGTTCGACCAAAAGGTTTTCATATATGGACTTGCCCAGGATGCGG
CCAATGAAATAGTAGTGTTTCTCATAGTCTTCGAACAGATCGGCGACATT
TGGATTGGGATAAAGCTTGTTGTCCGTGGGTACCATAAAGAATCCACG

BS10841.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3356-PA 3369 CG3356-RA 2488..3369 898..17 4385 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3356-RA 3956 CG3356-RA 2765..3646 898..17 4395 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24200951..24201651 884..184 3490 99.9 Minus
2R 25286936 2R 24201708..24201877 186..17 850 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:15:31 has no hits.

BS10841.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:23 Download gff for BS10841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-PA 2488..3369 17..898 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:16:26 Download gff for BS10841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-PA 2488..3369 17..898 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:35:23 Download gff for BS10841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 2765..3648 13..898 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:00:38 Download gff for BS10841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 2765..3648 13..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:00:38 Download gff for BS10841.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24200951..24201650 185..884 99 -> Minus
2R 24201710..24201879 13..184 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:35:23 Download gff for BS10841.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20088474..20089173 185..884 99 -> Minus
arm_2R 20089233..20089402 13..184 98   Minus

BS10841.5prime Sequence

871 bp (811 high quality bases) assembled on 2006-04-19

> BS10841.5prime
GAAGTTATCAGTCGACATGTTCGGATTCGACGGCGAGTACCGCCGCAGGC
CTGTGCAAAGTCTGGGCGGAGCCTCGCACACCTGCGACCGGGACACTGTG
ATCCGGAAGGCGGCCCTGGAGCGCCAGAAGCGCAACGAGCTGCGCCAGAA
GGAGAACGGGGCAGTGGTCCTGCAGTCTTACGCCCGCTCATTCATCCACC
GCCAGCGGCGCAAGCGGGCGGAACGGGAAGTTTTCGACATCTACCTAATG
GGCCACAAGGATGGCATCGTGGAGGACGAGAGCCTTACCTTCCTCTTGCG
GCGCCTCAACTTCTTCTACAGCATCCGGGAGGCCAAGGACAGCGAGCGAC
TGATCGAAGTTTGTCAGCAGATCCTTCGCCAGCCCGCTCGTCTGCTTCAG
CATTCCTCCCCTGACTCATTGTGGCTTCTGAGACTGTGCAAGCTGCTGGA
CACTTGCCTGCTACAGCTTAGCCTGTCGCACACGGCCCAAGCCATTCCCC
TACGCATGCTGGAAACATTTACCACCGTATCCTCTGTCCAGCAATATATG
AAGGATGAGGCTGTGTTGTTTCAGTATATGGAGCGCGTCTTTGGCTTCCT
GATTGCCCGCAATTACTTTGTGCGGCTGCGACGGCTGCTGGACGACAAGT
GTCCGCCGCTGGACGGAGAGACCCTGCATGCCCCGAGTCCGCTGGCTGAG
GCACTGCTTCAGTTGTTGCTACGTCCCCTGGAAGTTGCCAAAAGGGCATC
CGCGGGCGGCCAGATGTCCTCTATGTCGATGGCGGTTTGCCGGAACTTCA
CTCGAGACATCTTGGCCACGCCGCACACGGATCCTCTGCGATACTTTGTG
CTACCCTGCTTTGCCCTGAAT

BS10841.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3356-PA 3369 CG3356-RA 1..855 17..871 4275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3356-RA 3956 CG3356-RA 277..1132 16..871 4280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24198495..24199014 352..871 2600 100 Plus
2R 25286936 2R 24198100..24198436 16..352 1685 100 Plus
Blast to na_te.dros performed on 2015-02-04 04:52:42 has no hits.

BS10841.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:24 Download gff for BS10841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:16:28 Download gff for BS10841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:05:54 Download gff for BS10841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 271..1132 9..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:39:42 Download gff for BS10841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 271..1132 9..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:39:42 Download gff for BS10841.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24198094..24198436 9..352 99 -> Plus
2R 24198496..24199014 353..871 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:05:54 Download gff for BS10841.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20085617..20085959 9..352 99 -> Plus
arm_2R 20086019..20086537 353..871 100   Plus

BS10841.pep Sequence

Translation from 16 to 3384

> BS10841.pep
MFGFDGEYRRRPVQSLGGASHTCDRDTVIRKAALERQKRNELRQKENGAV
VLQSYARSFIHRQRRKRAEREVFDIYLMGHKDGIVEDESLTFLLRRLNFF
YSIREAKDSERLIEVCQQILRQPARLLQHSSPDSLWLLRLCKLLDTCLLQ
LSLSHTAQAIPLRMLETFTTVSSVQQYMKDEAVLFQYMERVFGFLIARNY
FVRLRRLLDDKCPPLDGETLHAPSPLAEALLQLLLRPLEVAKRASAGGQM
SSMSMAVCRNFTRDILATPHTDPLRYFVLPCFALNVDFPFDLLMRSLYDA
LESAGPAESDSTSSRRSFLFYGVETGHKTTRMDSIFSSFLLNSLMVLDRR
QLATLHQSPLLVIYVRLIAEMMPNILQLPKSTLRGHANAPHRHRDGDDDS
EESEDEDEELPAARTLDYDMEQTCRTSGELSVKERECLLESIAILNETER
VDFIVQQLDPHIENTHLIYALCEICHNLMIYNKHAVFEYKLLYTLAFTPK
FIRAVWFKLAAESTQLGFSAPLTLISKGVVPKHQGVDRTIPLLATFCMLF
GRLLPTLHDVEFVENKLLLQVHSTINHVRLMPFSIAEIIQMSKTLKDISM
GLVELAFPETRSNLANYRKVLGHTEADDKKLRHQKQIWANLLNVVVFVLN
QIHTRDLRLGFCPEDHWTVTRLDLPLDRPTDLPLTHSSRLRGIRPFQPIR
DFTREDFENGPPMSTKQIRSITILREIPFVVPFNKRVSILQSLVAASKMR
VQGNMQAFLQGPSVLITVRRSHLYEDAYDKLRPDNEPDLRFKFRIQFVSS
LGLDEAGIDGGGVFREFLSELIKTAFDPNRGFFMVTTDNKLYPNPNVADL
FEDYEKHYYFIGRILGKSIYENLLVELPLAEFFLTKLAGKYSDVDIHQLA
SLDPELYRNLLYLKDYSGDVSELNLDFTVASSSLGQTQIVELKPQGQSIP
VTNSNRIEYLQLIADYKLNVQIRRHCNAFRKGLSNVLPIEWLYMFSNKEL
QILISGAEIPIDLEDLKKHCEYGGEFSPEHPSIVTFWEVLEGFDDMQRRQ
LLKFVTSCSRPPLLGFKDLDPPFFIQNTGDMERLPTASTCTNLLKLPPFK
TVEQMREKLLYAIQSGAGFELS*

BS10841.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3356-PA 1122 CG3356-PA 1..1122 1..1122 5791 100 Plus
CG5087-PB 1077 CG5087-PB 611..1077 652..1122 799 36.4 Plus
CG5087-PA 1078 CG5087-PA 612..1078 652..1122 799 36.4 Plus
CG9153-PA 1058 CG9153-PA 681..1057 741..1121 468 33.1 Plus
CG9153-PB 1058 CG9153-PB 681..1057 741..1121 468 33.1 Plus