Clone BS10843 Report

Search the DGRC for BS10843

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptVinc-RA
Protein status:BS10843.pep: full length peptide match
Sequenced Size:2918

Clone Sequence Records

BS10843.complete Sequence

2918 bp assembled on 2009-12-07

GenBank Submission: KX801314

> BS10843.complete
GAAGTTATCAGTCGACATGCCCGTCTTTCACACAAAAACCATCGAGAGCA
TTCTAGATCCTGTTGCCCAACAGGTATCTCGTCTGGTGATCCTGCACGAG
GAGGCCGAGGATGGCAACGCGATGCCGGACCTCAGTCGACCGGTGCAGGT
GGTGTCGGCGGCAGTGGCTAATCTCGTGAAGGTGGGCCGCGATACGATCA
ACAGCTCCGACGACAAGATCCTGCGCCAGGACATGCCCTCGGCATTGCAC
CGCGTGGAGGGTGCCTCGCAGCTGCTGGAGGAGGCGTCCGATATGCTCCG
CTCCGACCCGTACTCGGGTCCGGCGCGCAAGAAGCTAATCGAGGGAAGCC
GCGGCATTCTGCAGGGCACCTCCTCGCTGCTGCTTTGCTTCGACGAGAGT
GAGGTGCGGAAGATCATCCAGGAGTGCAAGAGGGTACTGGACTACTTAGC
CGTGGCGGAGGTGATAAACACCATGGAACAGCTGGTGCAGTTCCTCAAGG
ACCTCTCGCCCTGTCTGAGCAAGGTGCACCGGGAGGTGGGCGCCCGCGAG
AAGGAGCTGACCCACCAGGTGCACAGCGAGATATTGGTGCGATGCTTGGA
GCAAGTGAAGACCCTGGCCCCAATCCTCATCTGCAGTATGAAGGTCTACA
TCCACATTGTGGAGCAGCAGGGCCGCGGAGCTGAGGAAGCGGCTGAGAAC
AGGAACTACCTGGCCGCCAGGATGAGCGACGAGCTGCAGGAGATCATCCG
CGTGCTGCAGCTGACTACCTACGATGAGGACACCAGCGAGCTGGACAACC
TCACTGTGCTGAAAAAGCTCTCCAATGCCATTTCCAACAAAATGGAGCAG
GCCAACGAGTGGCTATCGAATCCCTATGCCTTGCGAGGCGGCGTGGGCGA
GAAGGCTCTGCGCCAAGTGATCGATAATGCTACGGAGATCTCAGAGCGCT
GTCTGCCCCAGGACTCTTATCCCATCCGCAAGCTGGCTGATGAGGTGACG
GCTATGGCCAACACCTTGTGCGAGCTGCGCCAGGAGGGCAAGGGCCAGAG
TCCCCAAGCGGAGTCCCTGGTCAGGGGCATACGCGATCGCATGGGAGAGC
TCAAATCCCTGGTGCACCAGGCGGTGCTCGGCGTGGATAAGGCTGGAGTT
CAACAGACGGCCCACACCATCCAGGGTCGATTAGAGCAGGCGGTGAAGTG
GCTTCAGCACCCGGAAATCAACGATGGTGGCCTCGGAGAGCGGGCTATTA
ACCTGATTGTGGAGGAGGGTCGCAAGGTAGCCGAGGGCTGCCCCGGCCAC
CAGAAGGCCGAGATCCAGCAGCTGTGTGACGAAGTGGAGCGCCTCAAACG
CCAGGCAGCCGGATCCGGCCCGGCGGCCAAGCAGGCCGCCAAGCAGCTCA
CCCAGAAGCTCTACGAGCTGAAGGCGGCTATCCAGAATGCCCTGGTCAAT
CGCATTGTGCAGGACTTCATGGACGTGAGCACCCCGCTAAAACAGTTTAC
GGAGGCGGTGCTCCAGCCAGAGGGAACACCCGGACGGGAGCAGAACTTCA
ACCAGAAGTCCAACAACCTGCAGGCCTTCAGCGATCGCGCCTCGAAGACC
TCCAGAATGGTGGCCGCCGGTGGAGCCTGCGGCAATAAGAAGATCGCCGA
GATTCTGCTCTCTTCCGCCGCCCAGGTGGACTCCCTCACACCTCAGCTTA
TCAGCGCTGGTCGCATCCGAATGAACTATCCGGGCAGCAAGGCCGCGGAC
GAGCATCTGCAGAACCTGAAGCAGCAGTACGCGGATACCGTGCTGCGCAT
GCGCACCCTCTGCGACCAGGCCACGGACCCGGCGGACTTCATTAAAACAT
CCGAGGAGCACATGCAGGTTTACGCCAAGCTCTGTGAGGATGCTATCCAT
GCCCGCCAGCCGCAGAAGATGGTGGACAACACCTCGAACATTGCCCGCCT
GATCAATAGGGTCTTGTTGGTAGCTAAACAGGAGGCGGATAACTCTGAGG
ATCCGGTGTTCACGGAGCGCTTGAATGCCGCCGCCAACCGGTTGGAGCGT
TCGCTGCCCGCCATGGTTGGCGACGCAAAGCTGGTGGCCACCAACATTGC
CGATCCGGCGGCAGCGGCCGCTTGGAAGAACTCCTTCCAGCGGCTCCTGG
GCGATGTGCGTGAGGTGCGAGACGCTATTGCGCCACCGCAGCCACCACCA
CTGCCCACTTCCCTGCCGCCACCCATTCCGGAGCTGAGTGCCCTGCATCT
TTCCAACCAGAATGCCGAGCGTGCGCCTCCACGCCCACCACTGCCAAGAG
AAGGATTGGCGCCAGTGCGTCCGCCACCTCCGGAAACGGATGATGAAGAC
GAGGGCGTCTTCCGCACGATGCCACATGCCAACCAGCCCATCTTGATCGC
CGCCCGTGGCTTGCACCAGGAGGTGCGCCAGTGGTCGTCCAAGGACAACG
AGATCATTGCGGCCGCCAAGCGCATGGCGATCCTGATGGCCCGCCTCAGC
GAGCTAGTGCTGTCCGATTCGAGGGGCAGCAAGCGGGAGCTGATCGCCAC
CGCCAAGAAGATCGCCGAGGCCTCCGAGGACGTGACCCGATTGGCTAAGG
AGTTGGCCCGCCAGTGCACTGATCGACGCATCCGCACCAACCTGCTCCAA
GTGTGCGAACGCATCCCCACCATCGGCACCCAGCTGAAAATCCTGTCCAC
CGTGAAGGCCACGATGCTGGGCGCCCAGGGATCCGACGAGGATCGCGAGG
CCACCGAGATGCTTGTGGGCAATGCCCAGAACCTGATGCAGAGCGTGAAG
GAGACGGTGCGCGCCGCCGAAGGAGCCAGCATCAAGATCCGGTCGGATCA
AACCAGCAATCGTTTGCAGTGGGTGCGCCGACAGCCGTGGTACCAGTACT
AGAAGCTTTCTAGACCAT

BS10843.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
Vinc-RC 2886 CG3299-PC 1..2886 17..2902 14430 100 Plus
Vinc-RB 2886 CG3299-PB 1..2886 17..2902 14430 100 Plus
Vinc-RA 2886 CG3299-PA 1..2886 17..2902 14430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
Vinc-RC 3838 CG3299-RC 285..3170 17..2902 14430 100 Plus
Vinc-RB 3744 CG3299-RB 191..3076 17..2902 14430 100 Plus
Vinc-RA 3766 CG3299-RA 213..3098 17..2902 14430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2215905..2218098 2264..71 10970 100 Minus
X 23542271 X 2215253..2215654 2796..2395 2010 100 Minus
X 23542271 X 2215713..2215844 2395..2264 660 100 Minus
X 23542271 X 2215015..2215122 2902..2795 540 100 Minus
X 23542271 X 2220370..2220429 76..17 300 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:44:23 has no hits.

BS10843.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:03 Download gff for BS10843.complete
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 324..3209 17..2902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:01 Download gff for BS10843.complete
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 213..3098 17..2902 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:16 Download gff for BS10843.complete
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 324..3209 17..2902 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:54 Download gff for BS10843.complete
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 213..3098 17..2902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:54 Download gff for BS10843.complete
Subject Subject Range Query Range Percent Splice Strand
X 2220373..2220429 17..73 100   Minus
X 2215015..2215122 2795..2902 100 <- Minus
X 2215255..2215653 2396..2794 100 <- Minus
X 2215713..2215843 2265..2395 100 <- Minus
X 2215905..2218095 74..2264 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:01 Download gff for BS10843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2109048..2109155 2795..2902 100 <- Minus
arm_X 2109288..2109686 2396..2794 100 <- Minus
arm_X 2109746..2109876 2265..2395 100 <- Minus
arm_X 2109938..2112128 74..2264 100 <- Minus
arm_X 2114406..2114462 17..73 100   Minus

BS10843.3prime Sequence

872 bp (847 high quality bases) assembled on 2006-04-19

> BS10843.3prime
ATGGTCTAGAAAGCTTCTAGTACTGGTACCACGGCTGTCGGCGCACCCAC
TGCAAACGATTGCTGGTTTGATCCGACCGGATCTTGATGCTGGCTCCTTC
GGCGGCGCGCACCGTCTCCTTCACGCTCTGCATCAGGTTCTGGGCATTGC
CCACAAGCATCTCGGTGGCCTCGCGATCCTCGTCGGATCCCTGGGCGCCC
AGCATCGTGGCCTTCACGGTGGACAGGATTTTCAGCTGGGTGCCGATGGT
GGGGATGCGTTCGCACACTTGGAGCAGGTTGGTGCGGATGCGTCGATCAG
TGCACTGGCGGGCCAACTCCTTAGCCAATCGGGTCACGTCCTCGGAGGCC
TCGGCGATCTTCTTGGCGGTGGCGATCAGCTCCCGCTTGCTGCCCCTCGA
ATCGGACAGCACTAGCTCGCTGAGGCGGGCCATCAGGATCGCCATGCGCT
TGGCGGCCGCAATGATCTCGTTGTCCTTGGACGACCACTGGCGCACCTCC
TGGTGCAAGCCACGGGCGGCGATCAAGATGGGCTGGTTGGCATGTGGCAT
CGTGCGGAAGACGCCCTCGTCTTCATCATCCGTTTCCGGAGGTGGCGGAC
GCACTGGCGCCAATCCTTCTCTTGGCAGTGGTGGGCGTGGAGGCGCACGC
TCGGCATTCTGGTTGGAAAGATGCAGGGCACTCAGCTCCGGAATGGGTGG
CGGCAGGGAAGTGGGCAGTGGTGGTGGCTGCGGTGGCGCAATAGCGTCTC
GCACCTCACGCACATCGCCCAGGAGCCGCTGGAAGGAGTTCTTCCAAGCG
GCCGCTGCCGCCGGATCGGCAATGTTGGTGGCCACCAGCTTTGCGTCGCC
CACCATGGCGGGCAGCGAACGC

BS10843.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3299-PA 2886 Vinc-RA 2031..2886 872..17 4255 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Vinc-RC 3838 CG3299-RC 2315..3170 872..17 4265 99.9 Minus
Vinc-RB 3744 CG3299-RB 2221..3076 872..17 4265 99.9 Minus
Vinc-RA 3766 CG3299-RA 2243..3098 872..17 4265 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2215253..2215654 123..524 2010 100 Plus
X 23542271 X 2215905..2216122 655..872 1075 99.5 Plus
X 23542271 X 2215713..2215844 524..655 660 100 Plus
X 23542271 X 2215015..2215122 17..124 540 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:47:14 has no hits.

BS10843.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:25 Download gff for BS10843.3prime
Subject Subject Range Query Range Percent Splice Strand
Vinc-PA 2031..2886 17..872 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:16:29 Download gff for BS10843.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3299-PA 2031..2886 17..872 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:49:24 Download gff for BS10843.3prime
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 2243..3100 13..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:05 Download gff for BS10843.3prime
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 2243..3100 13..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:05 Download gff for BS10843.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2215013..2215122 13..124 98 <- Plus
X 2215255..2215653 125..523 100 <- Plus
X 2215713..2215843 524..654 100 <- Plus
X 2215905..2216122 655..872 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:49:24 Download gff for BS10843.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2109938..2110155 655..872 99   Plus
arm_X 2109046..2109155 13..124 98 <- Plus
arm_X 2109288..2109686 125..523 100 <- Plus
arm_X 2109746..2109876 524..654 100 <- Plus

BS10843.5prime Sequence

900 bp (836 high quality bases) assembled on 2006-04-19

> BS10843.5prime
GAAGTTATCAGTCGACATGCCCGTCTTTCACACAAAAACCATCGAGAGCA
TTCTAGATCCTGTTGCCCAACAGGTATCTCGTCTGGTGATCCTGCACGAG
GAGGCCGAGGATGGCAACGCGATGCCGGACCTCAGTCGACCGGTGCAGGT
GGTGTCGGCGGCAGTGGCTAATCTCGTGAAGGTGGGCCGCGATACGATCA
ACAGCTCCGACGACAAGATCCTGCGCCAGGACATGCCCTCGGCATTGCAC
CGCGTGGAGGGTGCCTCGCAGCTGCTGGAGGAGGCGTCCGATATGCTCCG
CTCCGACCCGTACTCGGGTCCGGCGCGCAAGAAGCTAATCGAGGGAAGCC
GCGGCATTCTGCAGGGCACCTCCTCGCTGCTGCTTTGCTTCGACGAGAGT
GAGGTGCGGAAGATCATCCAGGAGTGCAAGAGGGTACTGGACTACTTAGC
CGTGGCGGAGGTGATAAACACCATGGAACAGCTGGTGCAGTTCCTCAAGG
ACCTCTCGCCCTGTCTGAGCAAGGTGCACCGGGAGGTGGGCGCCCGCGAG
AAGGAGCTGACCCACCAGGTGCACAGCGAGATATTGGTGCGATGCTTGGA
GCAAGTGAAGACCCTGGCCCCAATCCTCATCTGCAGTATGAAGGTCTACA
TCCACATTGTGGAGCAGCAGGGCCGCGGAGCTGAGGAAGCGGCTGAGAAC
AGGAACTACCTGGCCGCCAGGATGAGCGACGAGCTGCAGGAGATCATCCG
CGTGCTGCAGCTGACTACCTACGATGAGGACACCAGCGAGCTGGACAACC
TCACTGTGCTGAAAAAGCTCTCCAATGCCATTTCCAACAAAATGGAGCAG
GCCAACGAGTGGCTATCGAATCCCTATGCCTTGCGAGGCGGCGTGGGCGA

BS10843.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3299-PA 2886 Vinc-RA 1..884 17..900 4420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
Vinc-RC 3838 CG3299-RC 285..1168 17..900 4420 100 Plus
Vinc-RB 3744 CG3299-RB 191..1074 17..900 4420 100 Plus
Vinc-RA 3766 CG3299-RA 213..1096 17..900 4420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2217269..2218098 900..71 4150 100 Minus
X 23542271 X 2220370..2220429 76..17 300 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:45:12 has no hits.

BS10843.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:26 Download gff for BS10843.5prime
Subject Subject Range Query Range Percent Splice Strand
Vinc-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:16:31 Download gff for BS10843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3299-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:50:02 Download gff for BS10843.5prime
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 205..1095 9..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:52:34 Download gff for BS10843.5prime
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 205..1095 9..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:52:34 Download gff for BS10843.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2217270..2218095 74..899 100 <- Minus
X 2220373..2220437 9..73 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:50:02 Download gff for BS10843.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2111303..2112128 74..899 100 <- Minus
arm_X 2114406..2114470 9..73 95   Minus

BS10843.pep Sequence

Translation from 16 to 2901

> BS10843.pep
MPVFHTKTIESILDPVAQQVSRLVILHEEAEDGNAMPDLSRPVQVVSAAV
ANLVKVGRDTINSSDDKILRQDMPSALHRVEGASQLLEEASDMLRSDPYS
GPARKKLIEGSRGILQGTSSLLLCFDESEVRKIIQECKRVLDYLAVAEVI
NTMEQLVQFLKDLSPCLSKVHREVGAREKELTHQVHSEILVRCLEQVKTL
APILICSMKVYIHIVEQQGRGAEEAAENRNYLAARMSDELQEIIRVLQLT
TYDEDTSELDNLTVLKKLSNAISNKMEQANEWLSNPYALRGGVGEKALRQ
VIDNATEISERCLPQDSYPIRKLADEVTAMANTLCELRQEGKGQSPQAES
LVRGIRDRMGELKSLVHQAVLGVDKAGVQQTAHTIQGRLEQAVKWLQHPE
INDGGLGERAINLIVEEGRKVAEGCPGHQKAEIQQLCDEVERLKRQAAGS
GPAAKQAAKQLTQKLYELKAAIQNALVNRIVQDFMDVSTPLKQFTEAVLQ
PEGTPGREQNFNQKSNNLQAFSDRASKTSRMVAAGGACGNKKIAEILLSS
AAQVDSLTPQLISAGRIRMNYPGSKAADEHLQNLKQQYADTVLRMRTLCD
QATDPADFIKTSEEHMQVYAKLCEDAIHARQPQKMVDNTSNIARLINRVL
LVAKQEADNSEDPVFTERLNAAANRLERSLPAMVGDAKLVATNIADPAAA
AAWKNSFQRLLGDVREVRDAIAPPQPPPLPTSLPPPIPELSALHLSNQNA
ERAPPRPPLPREGLAPVRPPPPETDDEDEGVFRTMPHANQPILIAARGLH
QEVRQWSSKDNEIIAAAKRMAILMARLSELVLSDSRGSKRELIATAKKIA
EASEDVTRLAKELARQCTDRRIRTNLLQVCERIPTIGTQLKILSTVKATM
LGAQGSDEDREATEMLVGNAQNLMQSVKETVRAAEGASIKIRSDQTSNRL
QWVRRQPWYQY*

BS10843.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Vinc-PC 961 CG3299-PC 1..961 1..961 4839 100 Plus
Vinc-PB 961 CG3299-PB 1..961 1..961 4839 100 Plus
Vinc-PA 961 CG3299-PA 1..961 1..961 4839 100 Plus
alpha-Cat-PA 917 CG17947-PA 252..874 326..957 348 24.5 Plus