Clone BS10848 Report

Search the DGRC for BS10848

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptAmun-RH
Protein status:BS10848.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10848.3prime Sequence

892 bp (708 high quality bases) assembled on 2006-04-19

> BS10848.3prime
ATGGTCTAGAAAGCTTTCATTCGCTGCGCAGTTTCTTTAGATCCGGTGAC
TTCTCCCCCACGCCCACACCCACTCCGCCGGCGTTCTTCAGCTCCATATC
GCAGTGCAGGGCAGTACGCTTCTGTCCAATGGCTGGTGCCGAGTCTGCAC
CCGCTGCTACCGGTGAAACCGCATCCACCGCCTTGTTCGCCGCCAGCTGC
TGCAGTTTACTGTCCCTCACAATGCCGTTGCTGCTATTGCTCTCGTCAGC
CTCTAGCTCCGCCTCATTATCCTCCTCCTCGTCCAGCTCATCTTCCTCCT
CGTCCTCCGCCTCATCCTCATCCTCGTCGCCCAGGACGCCGTTCCCGTTA
CCATTTCCATTGGCTGGTGCTGCAGTCGCTTTGCTGGCTGGCTGTGGTGC
TGCTGTAACCGCTTCCTCTTCTGCCAAAGGAGCAGGCTGACCGTTGTTGG
TGATCGAATTGTTAGTTTTGTGGGGCTGGCTCGGCGACTGCTTTTGATTC
TGATTCTGGCTCGAGTGCTGTGTGGGAGTCAGGATGGGCAGGCTGTTGGT
CTTGGGCGGCGCCTCCTGATTGCTTTCAGAGTCCGAGGCGAGCGGTGTTC
CACTCGAACCGATGCCAATGCCAATGTCTAGGGCGATGGGCTCACCGTCC
TCTGTGGAAGTGGTGGCCGTTGTCTGTGTGGTGCCATCGTTGTCATCGAT
GATCGGCTCCTGGGAGGTGGAATCGTTCGAAACAAAGTTGGAGTCACCGT
CCTGCAGGGCGGCGCCAACGGCAGCTGCGTTGTTCTTGGCCTCGCCCGAC
TGTAGAGGCGTCAGAGCAGCCGGGTTGGTGGTCTCATTCTCTGTCTCCGA
TTCTGTAGCAGTGTTGCGACCCGCTGCTCCTTGGCTTTCGTC

BS10848.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2446-PB 1653 CG2446-RB 778..1653 892..17 4305 99.6 Minus
CG2446-PD 1653 CG2446-RD 778..1653 892..17 4305 99.6 Minus
CG2446-PC 1653 CG2446-RC 778..1653 892..17 4305 99.6 Minus
CG2446-PE 1653 CG2446-RE 778..1653 892..17 4305 99.6 Minus
CG2446-PA 1653 CG2446-RA 778..1653 892..17 4305 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
Amun-RK 3028 CG2446-RK 1467..2342 892..17 4335 99.7 Minus
Amun-RJ 2658 CG2446-RJ 1097..1972 892..17 4335 99.7 Minus
Amun-RL 2622 CG2446-RL 1061..1936 892..17 4335 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11711510..11712364 17..871 4260 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 00:30:46 has no hits.

BS10848.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:31 Download gff for BS10848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2446-PC 778..1653 17..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:16:40 Download gff for BS10848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2446-PA 778..1653 17..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:52:24 Download gff for BS10848.3prime
Subject Subject Range Query Range Percent Splice Strand
Amun-RI 1425..2303 13..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:08 Download gff for BS10848.3prime
Subject Subject Range Query Range Percent Splice Strand
Amun-RL 1061..1939 13..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:08 Download gff for BS10848.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11711507..11712366 13..873 99 <- Plus
X 11712769..11712787 874..892 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:52:24 Download gff for BS10848.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11605540..11606399 13..873 99 <- Plus
arm_X 11606802..11606820 874..892 100   Plus

BS10848.5prime Sequence

906 bp (792 high quality bases) assembled on 2006-04-19

> BS10848.5prime
GAAGTTATCAGTCGACATGTCCAACGGCAAGGCGACGGTCTCGTTCTTCG
AGACCGGGAGCACCAAACAGTTCGAGTACTGCTACCAGCTCTATCCCCAG
GTTCTTAAGCTAAAGGCCGAGAAGCGCTGCAAGAAGCCGCAAGAGCTGAT
CCGCCTGGATCAGTGGTATCAGAATGAACTGCCCAAATTGATTAAGGCAC
GCGGCAAGGACGCGCATATGGTATACGATGAGCTCGTCCAGTCGATGAAG
TGGAAGCAGTCGCGCGGCAAATTCTATCCGCAGCTATCCTACCTGGTCAA
GGTCAACACACCGCGCGCCGTCATCCAGGAGACAAAGAAGGCCTTCCGCA
AGCTGCCCAATCTGGAGCAGGCGATCACAGCTTTATCGAACCTCAAGGGC
GTTGGCACCACAATGGCCAGTGCACTGCTGGCAGCCGCAGCTCCCGATTC
GGCACCATTCATGGCCGACGAGTGCCTGATGGCCATACCAGAGATCGAGG
GCATCGATTACACCACCAAGGAGTACCTCAACTTCGTCAATCACATTCAG
GCCACCGTGGAGCGCCTCAATGCGGAGGTGGGCGGGGATACGCCGCACTG
GTCGCCTCATCGCGTGGAGCTGGCCCTCTGGTCACACTATGTGGCCAATG
ATCTCAGTCCCGAGATGCTCGACGATATGCCGCCGCCTGGATCCGGCGCC
TCCACTGGCACCGGTTCACTCAGCACAAACGGCAACAGCAGCAAGGTGCT
CGATGGCGACGATACCAACGATGGTGTGGGTGTTGATTTGGACGACGAAA
GCCAAGGAGCAGGCGGTCGCAACACTGCTACAGAATCGGAGACAGAGAAT
GAGAACACCAACCCGGCTGCTCTGACGCCTCTACAGTCGGGCGAGGCCAA
GAACAA

BS10848.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2446-PB 1653 CG2446-RB 1..890 17..906 4450 100 Plus
CG2446-PD 1653 CG2446-RD 1..890 17..906 4450 100 Plus
CG2446-PC 1653 CG2446-RC 1..890 17..906 4450 100 Plus
CG2446-PE 1653 CG2446-RE 1..890 17..906 4450 100 Plus
CG2446-PA 1653 CG2446-RA 1..890 17..906 4450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
Amun-RK 3028 CG2446-RK 690..1579 17..906 4450 100 Plus
Amun-RJ 2658 CG2446-RJ 320..1209 17..906 4450 100 Plus
Amun-RL 2622 CG2446-RL 284..1173 17..906 4450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11712768..11713564 813..17 3985 100 Minus
X 23542271 X 11712273..11712369 906..810 485 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:24:35 has no hits.

BS10848.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:32 Download gff for BS10848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2446-PC 1..888 17..904 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:16:41 Download gff for BS10848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2446-PA 1..888 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:17:46 Download gff for BS10848.5prime
Subject Subject Range Query Range Percent Splice Strand
Amun-RI 642..1535 9..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:45 Download gff for BS10848.5prime
Subject Subject Range Query Range Percent Splice Strand
Amun-RL 278..1171 9..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:45 Download gff for BS10848.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11712275..11712366 813..904 100 <- Minus
X 11712769..11713570 9..812 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:17:46 Download gff for BS10848.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11606308..11606399 813..904 100 <- Minus
arm_X 11606802..11607603 9..812 99   Minus

BS10848.complete Sequence

1685 bp assembled on 2007-07-13

GenBank Submission: FJ636738

> BS10848.complete
GAAGTTATCAGTCGACATGTCCAACGGCAAGGCGACGGTCTCGTTCTTCG
AGACCGGGAGCACCAAACAGTTCGAGTACTGCTACCAGCTCTATCCCCAG
GTTCTTAAGCTAAAGGCCGAGAAGCGCTGCAAGAAGCCGCAAGAGCTGAT
CCGCCTGGATCAGTGGTATCAGAATGAACTGCCCAAATTGATTAAGGCAC
GCGGCAAGGACGCGCATATGGTATACGATGAGCTCGTCCAGTCGATGAAG
TGGAAGCAGTCGCGCGGCAAATTCTATCCGCAGCTATCCTACCTGGTCAA
GGTCAACACACCGCGCGCCGTCATCCAGGAGACAAAGAAGGCCTTCCGCA
AGCTGCCCAATCTGGAGCAGGCGATCACAGCTTTATCGAACCTCAAGGGC
GTTGGCACCACAATGGCCAGTGCACTGCTGGCAGCCGCAGCTCCCGATTC
GGCACCATTCATGGCCGACGAGTGCCTGATGGCCATACCAGAGATCGAGG
GCATCGATTACACCACCAAGGAGTACCTCAACTTCGTCAATCACATTCAG
GCCACCGTGGAGCGCCTCAATGCGGAGGTGGGCGGGGATACGCCGCACTG
GTCGCCTCATCGCGTGGAGCTGGCCCTCTGGTCACACTATGTGGCCAATG
ATCTCAGTCCCGAGATGCTCGACGATATGCCGCCGCCTGGATCCGGCGCC
TCCACTGGCACCGGTTCACTCAGCACAAACGGCAACAGCAGCAAGGTGCT
CGATGGCGACGATACCAACGATGGTGTGGGTGTTGATTTGGACGACGAAA
GCCAAGGAGCAGGCGGTCGCAACACTGCTACAGAATCGGAGACAGAGAAT
GAGAACACCAACCCGGCTGCTCTGACGCCTCTACAGTCGGGCGAGGCCAA
GAACAACGCAGCTGCCGTTGGCGCCGCCCTGCAGGACGGTGACTCCAACT
TTGTTTCGAACGATTCCACCTCCCAGGAGCCGATCATCGATGACAACGAT
GGCACCACACAGACAACGGCCACCACTTCCACAGAGGACGGTGAGCCCAT
CGCCCTAGACATTGGCATTGGCATCGGTTCGAGTGGAACACCGCTCGCCT
CGGACTCTGAAAGCAATCAGGAGGCGCCGCCCAAGACCAACAGCCTGCCC
ATCCTGACTCCCACACAGCACTCGAGCCAGAATCAGAATCAAAAGCAGTC
GCCGAGCCAGCCCCACAAAACTAACAATTCGATCACCAACAACGGTCAGC
CTGCTCCTTTGGCAGAAGAGGAAGCGGTTACAGCAGCACCACAGCCAGCC
AGCAAAGCGACTGCAGCACCAGCCAATGGAAATGGTAACGGGAACGGCGT
CCTGGGCGACGAGGATGAGGATGAGGCGGAGGACGAGGAGGAAGATGAGC
TGGACGAGGAGGAGGATAATGAGGCGGAGCTAGAGGCTGACGAGAGCAAT
AGCAGCAACGGCATTGTGAGGGACAGTAAACTGCAGCAGCTGGCGGCGAA
CAAGGCGGTGGATGCGGTTTCACCGGTAGCAGCGGGTGCAGACTCGGCAC
CAGCCATTGGACAGAAGCGTACTGCCCTGCACTGCGATATGGAGCTGAAG
AACGCCGGCGGAGTGGGTGTGGGCGTGGGGGAGAAGTCACCGGATCTAAA
GAAACTGCGCAGCGAATGAAAGCTTTCTAGACCAT

BS10848.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Amun-RK 1653 CG2446-PK 1..1653 17..1669 8265 100 Plus
Amun-RJ 1653 CG2446-PJ 1..1653 17..1669 8265 100 Plus
Amun-RL 1653 CG2446-PL 1..1653 17..1669 8265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
Amun-RK 3028 CG2446-RK 690..2342 17..1669 8265 100 Plus
Amun-RJ 2658 CG2446-RJ 320..1972 17..1669 8265 100 Plus
Amun-RL 2622 CG2446-RL 284..1936 17..1669 8265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11711510..11712369 1669..810 4300 100 Minus
X 23542271 X 11712768..11713564 813..17 3985 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:51:15 has no hits.

BS10848.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:41 Download gff for BS10848.complete
Subject Subject Range Query Range Percent Splice Strand
CG2446-RC 1..1653 17..1669 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:57:09 Download gff for BS10848.complete
Subject Subject Range Query Range Percent Splice Strand
CG2446-RC 666..2327 9..1673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:14 Download gff for BS10848.complete
Subject Subject Range Query Range Percent Splice Strand
Amun-RI 648..2299 17..1668 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:41 Download gff for BS10848.complete
Subject Subject Range Query Range Percent Splice Strand
CG2446-RC 666..2327 9..1673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:39 Download gff for BS10848.complete
Subject Subject Range Query Range Percent Splice Strand
Amun-RL 284..1935 17..1668 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:39 Download gff for BS10848.complete
Subject Subject Range Query Range Percent Splice Strand
X 11711511..11712366 813..1668 100 <- Minus
X 11712769..11713564 17..812 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:14 Download gff for BS10848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11605544..11606399 813..1668 100 <- Minus
arm_X 11606802..11607597 17..812 100   Minus

BS10848.pep Sequence

Translation from 16 to 1668

> BS10848.pep
MSNGKATVSFFETGSTKQFEYCYQLYPQVLKLKAEKRCKKPQELIRLDQW
YQNELPKLIKARGKDAHMVYDELVQSMKWKQSRGKFYPQLSYLVKVNTPR
AVIQETKKAFRKLPNLEQAITALSNLKGVGTTMASALLAAAAPDSAPFMA
DECLMAIPEIEGIDYTTKEYLNFVNHIQATVERLNAEVGGDTPHWSPHRV
ELALWSHYVANDLSPEMLDDMPPPGSGASTGTGSLSTNGNSSKVLDGDDT
NDGVGVDLDDESQGAGGRNTATESETENENTNPAALTPLQSGEAKNNAAA
VGAALQDGDSNFVSNDSTSQEPIIDDNDGTTQTTATTSTEDGEPIALDIG
IGIGSSGTPLASDSESNQEAPPKTNSLPILTPTQHSSQNQNQKQSPSQPH
KTNNSITNNGQPAPLAEEEAVTAAPQPASKATAAPANGNGNGNGVLGDED
EDEAEDEEEDELDEEEDNEAELEADESNSSNGIVRDSKLQQLAANKAVDA
VSPVAAGADSAPAIGQKRTALHCDMELKNAGGVGVGVGEKSPDLKKLRSE
*

BS10848.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
Amun-PK 550 CG2446-PK 1..550 1..550 2836 100 Plus
Amun-PJ 550 CG2446-PJ 1..550 1..550 2836 100 Plus
Amun-PL 550 CG2446-PL 1..550 1..550 2836 100 Plus
Amun-PI 550 CG2446-PI 1..550 1..550 2836 100 Plus
Amun-PH 550 CG2446-PH 1..550 1..550 2836 100 Plus