Clone Sequence Records
BS10855.complete Sequence
2954 bp assembled on 2009-12-07
GenBank Submission: KX800269
> BS10855.complete
GAAGTTATCAGTCGACATGAACGGTGGCGGGGGTGGCGAGGATGATCAGC
ATCTGCCAGGTGTTTCCAGTGCATCAGGATCTGCAGCTGGAGCGGTGGGC
GGGCGAGCCACGCCCGAAATGAAGCGTTCGGCGGTGCGCAGCCTAATCAA
GCGATACTTCCACCAACTACAATCCGGCTGTGGGAACGCCAACTGCAGCA
ATGCCAATTGCGCCTCCAGCGGCAAGGTGGCGCCCATGACGCCCAACGAG
GTGGCCGCCAGAGCACTGCAGCTCTTTTCACAGGATGCACAGCTCTGCGA
GGCGTTCACATCGGAGGCCAACAGCCCCCAGGACGTGGACATGCTTTCGC
CGAACGACAGTAGCAGTAGTAGCAGCGGCAGCTCGACAAGCACAATTACC
TCAGCCAGTACCACCACGACAACCAGCAGACAATCGCAGTCAACGCCAGC
TGCCGTTGTAGTGCCCGTATCCAGTCCATATCTTACCCAGAGTGTGCCGC
AACTGGATATCGCCGGCGCTGAACACTCCTCCGGCGACTCGGAACCGTGT
ACACCCACCCTGGCGCCAGTCCACAGCTTGGATGCCAACAGTCTGATAGC
GCTCTATGAGCAATGTAGGGCGGCTGACAGTTACGACAGGATTTGCCACG
CAATCGGCGTTGTGTTCTCCAGCGTAGATAGACTGGGCAAGAGCTTCATT
CGCAGCGCAGAACCAGCGGCTTCTAGTAGTCTCCAGGAGCTGCTGGCCAA
TTCACCGGGGGCTTTAAACAAGGAGCAGCTACGAACTTTGGAAGGGGAAC
ACGATAAAGACGAAGACAGTACACAACAGGTGGACGAACAATCAGAATCG
GCGGCTAATGCTACTGCTACTGCAGAATCAGTCGAATCAGAGGCGGAGCC
CGAAGAAGAGGACGATGATGTGTGTTCATCCCAAAGCAGCGACACACTGG
TGGATCTGCCCGGTTTGCGACGAGTGCAGCGTCTCCTTTTTGGCTGTCAA
ATACGAGCTATAACGGAGAAGCTTACCAGCAGCGTTATTCAGCTGTCTGA
CTGGGTGATTTACATGCGTACGGATTGGGAGAGGGTCATTCACTGTCTGG
TCATCTGCTTTGATCTAGCCACCAATACCAATAACAGTGTGGTGGACATG
GACTATCTGGACAGGGTGCTGCCAAAATTGTGCCAAGCGGCGTCGGCCAT
GCCAGTGCCGGCACAGGCGCGCCTGGCCAGGATCTGGGCTGCTCATTGTT
CAGATCAGCTGCATTCGTTGATCGCAGCCTGCCAGCAGCAAATTACTCTA
CAGGTGCTTTTGGACGAGGAATCCATGCGCGAGAACGAATCCATAATCAG
TGTCACCAAAGTTTTAAAGATTGTCTTCTACGCGAACATTCTGGCTAGCG
AGCTGGAGCGACCGTCGTGTCGGGTGCCGCTGGAGGATCGAACGGAAGCG
GCGACCGCATCTGGCAGCGCAGCAGTGGAGGACGACCTATTCGTCTACAA
CTCTTTGTTGGAGCCGCACATGCCCAAATTCGCCGAGGATCAGTTTGAAA
AGGAGCTGCAGGTGTCGGCAATCGATTGCCGGAAACCACTGATACCACTT
GAGGAGTTCTACAACGAGGCACTCAGTGAAAACATTCAGATGCACCACGA
CTACCTGTCCTACAAGACGTTAGCCATGGAGAGCGAGATTGGTTCCGGCC
ACGCGAACTATTTTTCGTTCATGCTGTACGCCTTTATCCTCACGCCGTCA
ACAAAAGTGGATGCCTTGTACTATGACAGTCGAATGAGGATGTATAGCGA
GCGCTACTCCTCCCTTCACTCCATCCTCAACAATATTGGCCAGGTAGGAC
AGGAAGATAATCCTCGGCCGGATCTTAAGCTGACGGTGCGAAGGGACCAG
CTCATCAACGACGCACTTATTGGGCTGGAAATGGTGGCCATGAGCAATCC
AAAGGATCTCAAGAAGCAGTTGGTGGTGGAGTTTGTCGGCGAGCAGGGGA
TCGATGAAGGCGGCGTATCCAAAGAGTTCTTCCAGCTAATCGTGGAGGAG
ATATTTAACCCGGCTTTTGGAATGTTTATACAGCAAGAGGAGACCAACAA
TATGTGGTTCAATGCCACACCATTTGAGAACGGAGCGCAATTCACTCTGA
TTGGTATAATTATTGGCCTGGCGATCTATAACAACGTCACCCTGGCCGTA
AACTTCCCCATGGTGGTCTATCGCAAGTTGATAGGCTATTGCGGCACGTT
CGCAGACCTCAGCGACTGGAGTCCGGCGCTGTACAAGAGTCTGAAGTCCA
TGCTGGACTATCAGGGCCAGGATATGGAGGAGGTATTCGAACAGACCTTC
AAGATTAGCTATAGCGATGTTTTCGGTGATGTGGTACAACACGAACTGGT
GCCGAACGGCCAGGATGTACTGGTGGGGCAGCACAACAAGGAACTGTTTG
TCAACCTGTACAGTGATTTCCTGCTTAACACGAATATCGAACAGCAGTTC
AATGCTTTCCGCAAGGGCTTCGAAATGGTTACGGACGAATCGCCACTGAA
GCTGCTCTTCCGTCCAGAGGAGATTGAAATGCTGGTCTGCGGCAGTCGTG
AATTCGACTTTGTGGAACTGGAAAACTCCACTGTGTACGAGGGCGGCTAC
ACGGAGAAGAGCCAGTACATCCAGGACTTCTGGAGCATAGTGCATGCGAT
GCCCAGCGAGGACAAGCACAAGCTGCTCGAATTCACGACGGGATCGGCGC
GTGTTCCGGTTGGCGGCCTGAAATGCCTGCGTCTGCTAATCACGCGTCAC
GGTCCGGATAGCGATCGGTTGCCTACCTCGCACACCTGCTTCAACGTTCT
CCTCCTGCCCGAGTACAGCAGCCGCGAGAAGCTGGAGGAGCGCCTGATGA
AGGCCATCAACTACTCGAAGGGCTTCGGCATGCTGTAGAAGCTTTCTAGA
CCAT
BS10855.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:25:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ube3a-RA | 2922 | CG6190-PA | 1..2922 | 17..2938 | 14610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ube3a-RA | 3674 | CG6190-RA | 378..3300 | 17..2939 | 14615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11208929..11209733 | 1127..323 | 4025 | 100 | Minus |
3L | 28110227 | 3L | 11208005..11208561 | 1924..1368 | 2785 | 100 | Minus |
3L | 28110227 | 3L | 11207197..11207691 | 2600..2106 | 2475 | 100 | Minus |
3L | 28110227 | 3L | 11206796..11207135 | 2939..2600 | 1700 | 100 | Minus |
3L | 28110227 | 3L | 11209836..11210093 | 324..67 | 1290 | 100 | Minus |
3L | 28110227 | 3L | 11208625..11208866 | 1369..1128 | 1210 | 100 | Minus |
3L | 28110227 | 3L | 11207755..11207939 | 2108..1924 | 925 | 100 | Minus |
3L | 28110227 | 3L | 11210154..11210206 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:25:37 has no hits.
BS10855.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:53 Download gff for
BS10855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
As-RA | 375..3296 | 17..2938 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:58 Download gff for
BS10855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ube3a-RA | 378..3299 | 17..2938 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:15 Download gff for
BS10855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
As-RA | 375..3296 | 17..2938 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:10 Download gff for
BS10855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ube3a-RA | 378..3299 | 17..2938 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:10 Download gff for
BS10855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11206797..11207135 | 2600..2938 | 100 | <- | Minus |
3L | 11207198..11207690 | 2107..2599 | 100 | <- | Minus |
3L | 11207757..11207938 | 1925..2106 | 100 | <- | Minus |
3L | 11208005..11208559 | 1370..1924 | 100 | <- | Minus |
3L | 11208625..11208866 | 1128..1369 | 100 | <- | Minus |
3L | 11208929..11209731 | 325..1127 | 100 | <- | Minus |
3L | 11209836..11210090 | 70..324 | 100 | <- | Minus |
3L | 11210154..11210206 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:58 Download gff for
BS10855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11199897..11200235 | 2600..2938 | 100 | <- | Minus |
arm_3L | 11200298..11200790 | 2107..2599 | 100 | <- | Minus |
arm_3L | 11200857..11201038 | 1925..2106 | 100 | <- | Minus |
arm_3L | 11201105..11201659 | 1370..1924 | 100 | <- | Minus |
arm_3L | 11201725..11201966 | 1128..1369 | 100 | <- | Minus |
arm_3L | 11202029..11202831 | 325..1127 | 100 | <- | Minus |
arm_3L | 11202936..11203190 | 70..324 | 100 | <- | Minus |
arm_3L | 11203254..11203306 | 17..69 | 100 | | Minus |
BS10855.3prime Sequence
967 bp (892 high quality bases) assembled on 2006-04-19
> BS10855.3prime
ATGGTCTAGAAAGCTTCTACAGCATGCCGAAGCCCTTCGAGTAGTTGATG
GCCTTCATCAGGCGCTCCTCCAGCTTCTCGCGGCTGCTGTACTCGGGCAG
GAGGAGAACGTTGAAGCAGGTGTGCGAGGTAGGCAACCGATCGCTATCCG
GACCGTGACGCGTGATTAGCAGACGCAGGCATTTCAGGCCGCCAACCGGA
ACACGCGCCGATCCCGTCGTGAATTCGAGCAGCTTGTGCTTGTCCTCGCT
GGGCATCGCATGCACTATGCTCCAGAAGTCCTGGATGTACTGGCTCTTCT
CCGTGTAGCCGCCCTCGTACACAGTGGAGTTTTCCAGTTCCACAAAGTCG
AATTCACGACTGCCGCAGACCAGCATTTCAATCTCCTCTGGACGGAAGAG
CAGCTTCAGTGGCGATTCGTCCGTAACCATTTCGAAGCCCTTGCGGAAAG
CATTGAACTGCTGTTCGATATTCGTGTTAAGCAGGAAATCACTGTACAGG
TTGACAAACAGTTCCTTGTTGTGCTGCCCCACCAGTACATCCTGGCCGTT
CGGCACCAGTTCGTGTTGTACCACATCACCGAAAACATCGCTATAGCTAA
TCTTGAAGGTCTGTTCGAATACCTCCTCCATATCCTGGCCCTGATAGTCC
AGCATGGACTTCAGACTCTTGTACAGCGCCGGACTCCAGTCGCTGAGGTC
TGCGAACGTGCCGCAATAGCCTATCAACTTGCGATAGACCACCATGGGGA
AGTTTACGGCCAGGGTGACGTTGTTATAGATCGCCAGGCCAATAATTATA
CCAATCAGAGTGAATTGCGCTCCGTTCTCAAATGGTGTGGCATTGAACCA
CATATTGTTGGTCTCCTCTTGCTGTATAAACATTCCAAAAAGCCGGGTTA
ATATCTCCTCCCACGATAGCTGGAAGAACTCTTTGGATACGCCGCCTTCA
TCGATCCCCTGCTCGCC
BS10855.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6190-PA | 2922 | As-RA | 2049..2922 | 890..17 | 4370 | 100 | Minus |
CG6190-PA | 2922 | As-RA | 1972..2022 | 967..917 | 255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ube3a-RA | 3674 | CG6190-RA | 2349..3300 | 967..16 | 4670 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11207197..11207691 | 355..849 | 2475 | 100 | Plus |
3L | 28110227 | 3L | 11206796..11207135 | 16..355 | 1700 | 100 | Plus |
3L | 28110227 | 3L | 11207755..11207875 | 847..967 | 455 | 91.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:38:43 has no hits.
BS10855.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 10:51:46 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:02 Download gff for
BS10855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6190-PA | 1972..2922 | 17..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:41:37 Download gff for
BS10855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ube3a-RA | 2349..3302 | 12..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:28 Download gff for
BS10855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ube3a-RA | 2349..3302 | 12..967 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:28 Download gff for
BS10855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11206794..11207135 | 12..355 | 99 | <- | Plus |
3L | 11207198..11207690 | 356..848 | 100 | <- | Plus |
3L | 11207757..11207875 | 849..967 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:41:37 Download gff for
BS10855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11199894..11200235 | 12..355 | 99 | <- | Plus |
arm_3L | 11200298..11200790 | 356..848 | 100 | <- | Plus |
arm_3L | 11200857..11200975 | 849..967 | 96 | | Plus |
BS10855.5prime Sequence
818 bp (791 high quality bases) assembled on 2006-04-19
> BS10855.5prime
GAAGTTATCAGTCGACATGAACGGTGGCGGGGGTGGCGAGGATGATCAGC
ATCTGCCAGGTGTTTCCAGTGCATCAGGATCTGCAGCTGGAGCGGTGGGC
GGGCGAGCCACGCCCGAAATGAAGCGTTCGGCGGTGCGCAGCCTAATCAA
GCGATACTTCCACCAACTACAATCCGGCTGTGGGAACGCCAACTGCAGCA
ATGCCAATTGCGCCTCCAGCGGCAAGGTGGCGCCCATGACGCCCAACGAG
GTGGCCGCCAGAGCACTGCAGCTCTTTTCACAGGATGCACAGCTCTGCGA
GGCGTTCACATCGGAGGCCAACAGCCCCCAGGACGTGGACATGCTTTCGC
CGAACGACAGTAGCAGTAGTAGCAGCGGCAGCTCGACAAGCACAATTACC
TCAGCCAGTACCACCACGACAACCAGCAGACAATCGCAGTCAACGCCAGC
TGCCGTTGTAGTGCCCGTATCCAGTCCATATCTTACCCAGAGTGTGCCGC
AACTGGATATCGCCGGCGCTGAACACTCCTCCGGCGACTCGGAACCGTGT
ACACCCACCCTGGCGCCAGTCCACAGCTTGGATGCCAACAGTCTGATAGC
GCTCTATGAGCAATGTAGGGCGGCTGACAGTTACGACAGGATTTGCCACG
CAATCGGCGTTGTGTTCTCCAGCGTAGATAGACTGGGCAAGAGCTTCATT
CGCAGCGCAGAACCAGCGGCTTCTAGTAGTCTCCAGGAGCTGCTGGCCAA
TTCACCGGGGGCTTTAAACAAGGAGCAGCTACGAACTTTGGAAGGGGAAC
ACGATAAAGACGAAGACA
BS10855.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6190-PA | 2922 | As-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ube3a-RA | 3674 | CG6190-RA | 378..1179 | 17..818 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11209238..11209733 | 818..323 | 2480 | 100 | Minus |
3L | 28110227 | 3L | 11209836..11210093 | 324..67 | 1290 | 100 | Minus |
3L | 28110227 | 3L | 11210154..11210206 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:14:42 has no hits.
BS10855.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 10:51:48 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:03 Download gff for
BS10855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6190-PA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:38:48 Download gff for
BS10855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ube3a-RA | 367..1178 | 5..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:57:35 Download gff for
BS10855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ube3a-RA | 367..1178 | 5..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:57:35 Download gff for
BS10855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11209239..11209731 | 325..817 | 100 | <- | Minus |
3L | 11209836..11210090 | 70..324 | 100 | <- | Minus |
3L | 11210154..11210217 | 5..69 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:38:48 Download gff for
BS10855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11202339..11202831 | 325..817 | 100 | <- | Minus |
arm_3L | 11202936..11203190 | 70..324 | 100 | <- | Minus |
arm_3L | 11203254..11203317 | 5..69 | 93 | | Minus |
BS10855.pep Sequence
Translation from 16 to 2937
> BS10855.pep
MNGGGGGEDDQHLPGVSSASGSAAGAVGGRATPEMKRSAVRSLIKRYFHQ
LQSGCGNANCSNANCASSGKVAPMTPNEVAARALQLFSQDAQLCEAFTSE
ANSPQDVDMLSPNDSSSSSSGSSTSTITSASTTTTTSRQSQSTPAAVVVP
VSSPYLTQSVPQLDIAGAEHSSGDSEPCTPTLAPVHSLDANSLIALYEQC
RAADSYDRICHAIGVVFSSVDRLGKSFIRSAEPAASSSLQELLANSPGAL
NKEQLRTLEGEHDKDEDSTQQVDEQSESAANATATAESVESEAEPEEEDD
DVCSSQSSDTLVDLPGLRRVQRLLFGCQIRAITEKLTSSVIQLSDWVIYM
RTDWERVIHCLVICFDLATNTNNSVVDMDYLDRVLPKLCQAASAMPVPAQ
ARLARIWAAHCSDQLHSLIAACQQQITLQVLLDEESMRENESIISVTKVL
KIVFYANILASELERPSCRVPLEDRTEAATASGSAAVEDDLFVYNSLLEP
HMPKFAEDQFEKELQVSAIDCRKPLIPLEEFYNEALSENIQMHHDYLSYK
TLAMESEIGSGHANYFSFMLYAFILTPSTKVDALYYDSRMRMYSERYSSL
HSILNNIGQVGQEDNPRPDLKLTVRRDQLINDALIGLEMVAMSNPKDLKK
QLVVEFVGEQGIDEGGVSKEFFQLIVEEIFNPAFGMFIQQEETNNMWFNA
TPFENGAQFTLIGIIIGLAIYNNVTLAVNFPMVVYRKLIGYCGTFADLSD
WSPALYKSLKSMLDYQGQDMEEVFEQTFKISYSDVFGDVVQHELVPNGQD
VLVGQHNKELFVNLYSDFLLNTNIEQQFNAFRKGFEMVTDESPLKLLFRP
EEIEMLVCGSREFDFVELENSTVYEGGYTEKSQYIQDFWSIVHAMPSEDK
HKLLEFTTGSARVPVGGLKCLRLLITRHGPDSDRLPTSHTCFNVLLLPEY
SSREKLEERLMKAINYSKGFGML*
BS10855.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ube3a-PA | 973 | CG6190-PA | 1..973 | 1..973 | 4990 | 100 | Plus |
CG9153-PA | 1058 | CG9153-PA | 587..1058 | 479..973 | 730 | 34.9 | Plus |
CG9153-PB | 1058 | CG9153-PB | 587..1058 | 479..973 | 730 | 34.9 | Plus |
CG9153-PC | 1062 | CG9153-PC | 592..1062 | 479..973 | 730 | 35.1 | Plus |
Su(dx)-PF | 949 | CG4244-PF | 594..946 | 620..970 | 455 | 32.2 | Plus |