Clone BS10855 Report

Search the DGRC for BS10855

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptUbe3a-RA
Protein status:BS10855.pep: full length peptide match
Sequenced Size:2954

Clone Sequence Records

BS10855.complete Sequence

2954 bp assembled on 2009-12-07

GenBank Submission: KX800269

> BS10855.complete
GAAGTTATCAGTCGACATGAACGGTGGCGGGGGTGGCGAGGATGATCAGC
ATCTGCCAGGTGTTTCCAGTGCATCAGGATCTGCAGCTGGAGCGGTGGGC
GGGCGAGCCACGCCCGAAATGAAGCGTTCGGCGGTGCGCAGCCTAATCAA
GCGATACTTCCACCAACTACAATCCGGCTGTGGGAACGCCAACTGCAGCA
ATGCCAATTGCGCCTCCAGCGGCAAGGTGGCGCCCATGACGCCCAACGAG
GTGGCCGCCAGAGCACTGCAGCTCTTTTCACAGGATGCACAGCTCTGCGA
GGCGTTCACATCGGAGGCCAACAGCCCCCAGGACGTGGACATGCTTTCGC
CGAACGACAGTAGCAGTAGTAGCAGCGGCAGCTCGACAAGCACAATTACC
TCAGCCAGTACCACCACGACAACCAGCAGACAATCGCAGTCAACGCCAGC
TGCCGTTGTAGTGCCCGTATCCAGTCCATATCTTACCCAGAGTGTGCCGC
AACTGGATATCGCCGGCGCTGAACACTCCTCCGGCGACTCGGAACCGTGT
ACACCCACCCTGGCGCCAGTCCACAGCTTGGATGCCAACAGTCTGATAGC
GCTCTATGAGCAATGTAGGGCGGCTGACAGTTACGACAGGATTTGCCACG
CAATCGGCGTTGTGTTCTCCAGCGTAGATAGACTGGGCAAGAGCTTCATT
CGCAGCGCAGAACCAGCGGCTTCTAGTAGTCTCCAGGAGCTGCTGGCCAA
TTCACCGGGGGCTTTAAACAAGGAGCAGCTACGAACTTTGGAAGGGGAAC
ACGATAAAGACGAAGACAGTACACAACAGGTGGACGAACAATCAGAATCG
GCGGCTAATGCTACTGCTACTGCAGAATCAGTCGAATCAGAGGCGGAGCC
CGAAGAAGAGGACGATGATGTGTGTTCATCCCAAAGCAGCGACACACTGG
TGGATCTGCCCGGTTTGCGACGAGTGCAGCGTCTCCTTTTTGGCTGTCAA
ATACGAGCTATAACGGAGAAGCTTACCAGCAGCGTTATTCAGCTGTCTGA
CTGGGTGATTTACATGCGTACGGATTGGGAGAGGGTCATTCACTGTCTGG
TCATCTGCTTTGATCTAGCCACCAATACCAATAACAGTGTGGTGGACATG
GACTATCTGGACAGGGTGCTGCCAAAATTGTGCCAAGCGGCGTCGGCCAT
GCCAGTGCCGGCACAGGCGCGCCTGGCCAGGATCTGGGCTGCTCATTGTT
CAGATCAGCTGCATTCGTTGATCGCAGCCTGCCAGCAGCAAATTACTCTA
CAGGTGCTTTTGGACGAGGAATCCATGCGCGAGAACGAATCCATAATCAG
TGTCACCAAAGTTTTAAAGATTGTCTTCTACGCGAACATTCTGGCTAGCG
AGCTGGAGCGACCGTCGTGTCGGGTGCCGCTGGAGGATCGAACGGAAGCG
GCGACCGCATCTGGCAGCGCAGCAGTGGAGGACGACCTATTCGTCTACAA
CTCTTTGTTGGAGCCGCACATGCCCAAATTCGCCGAGGATCAGTTTGAAA
AGGAGCTGCAGGTGTCGGCAATCGATTGCCGGAAACCACTGATACCACTT
GAGGAGTTCTACAACGAGGCACTCAGTGAAAACATTCAGATGCACCACGA
CTACCTGTCCTACAAGACGTTAGCCATGGAGAGCGAGATTGGTTCCGGCC
ACGCGAACTATTTTTCGTTCATGCTGTACGCCTTTATCCTCACGCCGTCA
ACAAAAGTGGATGCCTTGTACTATGACAGTCGAATGAGGATGTATAGCGA
GCGCTACTCCTCCCTTCACTCCATCCTCAACAATATTGGCCAGGTAGGAC
AGGAAGATAATCCTCGGCCGGATCTTAAGCTGACGGTGCGAAGGGACCAG
CTCATCAACGACGCACTTATTGGGCTGGAAATGGTGGCCATGAGCAATCC
AAAGGATCTCAAGAAGCAGTTGGTGGTGGAGTTTGTCGGCGAGCAGGGGA
TCGATGAAGGCGGCGTATCCAAAGAGTTCTTCCAGCTAATCGTGGAGGAG
ATATTTAACCCGGCTTTTGGAATGTTTATACAGCAAGAGGAGACCAACAA
TATGTGGTTCAATGCCACACCATTTGAGAACGGAGCGCAATTCACTCTGA
TTGGTATAATTATTGGCCTGGCGATCTATAACAACGTCACCCTGGCCGTA
AACTTCCCCATGGTGGTCTATCGCAAGTTGATAGGCTATTGCGGCACGTT
CGCAGACCTCAGCGACTGGAGTCCGGCGCTGTACAAGAGTCTGAAGTCCA
TGCTGGACTATCAGGGCCAGGATATGGAGGAGGTATTCGAACAGACCTTC
AAGATTAGCTATAGCGATGTTTTCGGTGATGTGGTACAACACGAACTGGT
GCCGAACGGCCAGGATGTACTGGTGGGGCAGCACAACAAGGAACTGTTTG
TCAACCTGTACAGTGATTTCCTGCTTAACACGAATATCGAACAGCAGTTC
AATGCTTTCCGCAAGGGCTTCGAAATGGTTACGGACGAATCGCCACTGAA
GCTGCTCTTCCGTCCAGAGGAGATTGAAATGCTGGTCTGCGGCAGTCGTG
AATTCGACTTTGTGGAACTGGAAAACTCCACTGTGTACGAGGGCGGCTAC
ACGGAGAAGAGCCAGTACATCCAGGACTTCTGGAGCATAGTGCATGCGAT
GCCCAGCGAGGACAAGCACAAGCTGCTCGAATTCACGACGGGATCGGCGC
GTGTTCCGGTTGGCGGCCTGAAATGCCTGCGTCTGCTAATCACGCGTCAC
GGTCCGGATAGCGATCGGTTGCCTACCTCGCACACCTGCTTCAACGTTCT
CCTCCTGCCCGAGTACAGCAGCCGCGAGAAGCTGGAGGAGCGCCTGATGA
AGGCCATCAACTACTCGAAGGGCTTCGGCATGCTGTAGAAGCTTTCTAGA
CCAT

BS10855.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Ube3a-RA 2922 CG6190-PA 1..2922 17..2938 14610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ube3a-RA 3674 CG6190-RA 378..3300 17..2939 14615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11208929..11209733 1127..323 4025 100 Minus
3L 28110227 3L 11208005..11208561 1924..1368 2785 100 Minus
3L 28110227 3L 11207197..11207691 2600..2106 2475 100 Minus
3L 28110227 3L 11206796..11207135 2939..2600 1700 100 Minus
3L 28110227 3L 11209836..11210093 324..67 1290 100 Minus
3L 28110227 3L 11208625..11208866 1369..1128 1210 100 Minus
3L 28110227 3L 11207755..11207939 2108..1924 925 100 Minus
3L 28110227 3L 11210154..11210206 69..17 265 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:25:37 has no hits.

BS10855.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:53 Download gff for BS10855.complete
Subject Subject Range Query Range Percent Splice Strand
As-RA 375..3296 17..2938 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:58 Download gff for BS10855.complete
Subject Subject Range Query Range Percent Splice Strand
Ube3a-RA 378..3299 17..2938 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:15 Download gff for BS10855.complete
Subject Subject Range Query Range Percent Splice Strand
As-RA 375..3296 17..2938 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:10 Download gff for BS10855.complete
Subject Subject Range Query Range Percent Splice Strand
Ube3a-RA 378..3299 17..2938 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:10 Download gff for BS10855.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11206797..11207135 2600..2938 100 <- Minus
3L 11207198..11207690 2107..2599 100 <- Minus
3L 11207757..11207938 1925..2106 100 <- Minus
3L 11208005..11208559 1370..1924 100 <- Minus
3L 11208625..11208866 1128..1369 100 <- Minus
3L 11208929..11209731 325..1127 100 <- Minus
3L 11209836..11210090 70..324 100 <- Minus
3L 11210154..11210206 17..69 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:58 Download gff for BS10855.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11199897..11200235 2600..2938 100 <- Minus
arm_3L 11200298..11200790 2107..2599 100 <- Minus
arm_3L 11200857..11201038 1925..2106 100 <- Minus
arm_3L 11201105..11201659 1370..1924 100 <- Minus
arm_3L 11201725..11201966 1128..1369 100 <- Minus
arm_3L 11202029..11202831 325..1127 100 <- Minus
arm_3L 11202936..11203190 70..324 100 <- Minus
arm_3L 11203254..11203306 17..69 100   Minus

BS10855.3prime Sequence

967 bp (892 high quality bases) assembled on 2006-04-19

> BS10855.3prime
ATGGTCTAGAAAGCTTCTACAGCATGCCGAAGCCCTTCGAGTAGTTGATG
GCCTTCATCAGGCGCTCCTCCAGCTTCTCGCGGCTGCTGTACTCGGGCAG
GAGGAGAACGTTGAAGCAGGTGTGCGAGGTAGGCAACCGATCGCTATCCG
GACCGTGACGCGTGATTAGCAGACGCAGGCATTTCAGGCCGCCAACCGGA
ACACGCGCCGATCCCGTCGTGAATTCGAGCAGCTTGTGCTTGTCCTCGCT
GGGCATCGCATGCACTATGCTCCAGAAGTCCTGGATGTACTGGCTCTTCT
CCGTGTAGCCGCCCTCGTACACAGTGGAGTTTTCCAGTTCCACAAAGTCG
AATTCACGACTGCCGCAGACCAGCATTTCAATCTCCTCTGGACGGAAGAG
CAGCTTCAGTGGCGATTCGTCCGTAACCATTTCGAAGCCCTTGCGGAAAG
CATTGAACTGCTGTTCGATATTCGTGTTAAGCAGGAAATCACTGTACAGG
TTGACAAACAGTTCCTTGTTGTGCTGCCCCACCAGTACATCCTGGCCGTT
CGGCACCAGTTCGTGTTGTACCACATCACCGAAAACATCGCTATAGCTAA
TCTTGAAGGTCTGTTCGAATACCTCCTCCATATCCTGGCCCTGATAGTCC
AGCATGGACTTCAGACTCTTGTACAGCGCCGGACTCCAGTCGCTGAGGTC
TGCGAACGTGCCGCAATAGCCTATCAACTTGCGATAGACCACCATGGGGA
AGTTTACGGCCAGGGTGACGTTGTTATAGATCGCCAGGCCAATAATTATA
CCAATCAGAGTGAATTGCGCTCCGTTCTCAAATGGTGTGGCATTGAACCA
CATATTGTTGGTCTCCTCTTGCTGTATAAACATTCCAAAAAGCCGGGTTA
ATATCTCCTCCCACGATAGCTGGAAGAACTCTTTGGATACGCCGCCTTCA
TCGATCCCCTGCTCGCC

BS10855.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6190-PA 2922 As-RA 2049..2922 890..17 4370 100 Minus
CG6190-PA 2922 As-RA 1972..2022 967..917 255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
Ube3a-RA 3674 CG6190-RA 2349..3300 967..16 4670 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11207197..11207691 355..849 2475 100 Plus
3L 28110227 3L 11206796..11207135 16..355 1700 100 Plus
3L 28110227 3L 11207755..11207875 847..967 455 91.7 Plus
Blast to na_te.dros performed on 2015-02-12 11:38:43 has no hits.

BS10855.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 10:51:46 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:02 Download gff for BS10855.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6190-PA 1972..2922 17..967 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:41:37 Download gff for BS10855.3prime
Subject Subject Range Query Range Percent Splice Strand
Ube3a-RA 2349..3302 12..967 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:28 Download gff for BS10855.3prime
Subject Subject Range Query Range Percent Splice Strand
Ube3a-RA 2349..3302 12..967 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:28 Download gff for BS10855.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11206794..11207135 12..355 99 <- Plus
3L 11207198..11207690 356..848 100 <- Plus
3L 11207757..11207875 849..967 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:41:37 Download gff for BS10855.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11199894..11200235 12..355 99 <- Plus
arm_3L 11200298..11200790 356..848 100 <- Plus
arm_3L 11200857..11200975 849..967 96   Plus

BS10855.5prime Sequence

818 bp (791 high quality bases) assembled on 2006-04-19

> BS10855.5prime
GAAGTTATCAGTCGACATGAACGGTGGCGGGGGTGGCGAGGATGATCAGC
ATCTGCCAGGTGTTTCCAGTGCATCAGGATCTGCAGCTGGAGCGGTGGGC
GGGCGAGCCACGCCCGAAATGAAGCGTTCGGCGGTGCGCAGCCTAATCAA
GCGATACTTCCACCAACTACAATCCGGCTGTGGGAACGCCAACTGCAGCA
ATGCCAATTGCGCCTCCAGCGGCAAGGTGGCGCCCATGACGCCCAACGAG
GTGGCCGCCAGAGCACTGCAGCTCTTTTCACAGGATGCACAGCTCTGCGA
GGCGTTCACATCGGAGGCCAACAGCCCCCAGGACGTGGACATGCTTTCGC
CGAACGACAGTAGCAGTAGTAGCAGCGGCAGCTCGACAAGCACAATTACC
TCAGCCAGTACCACCACGACAACCAGCAGACAATCGCAGTCAACGCCAGC
TGCCGTTGTAGTGCCCGTATCCAGTCCATATCTTACCCAGAGTGTGCCGC
AACTGGATATCGCCGGCGCTGAACACTCCTCCGGCGACTCGGAACCGTGT
ACACCCACCCTGGCGCCAGTCCACAGCTTGGATGCCAACAGTCTGATAGC
GCTCTATGAGCAATGTAGGGCGGCTGACAGTTACGACAGGATTTGCCACG
CAATCGGCGTTGTGTTCTCCAGCGTAGATAGACTGGGCAAGAGCTTCATT
CGCAGCGCAGAACCAGCGGCTTCTAGTAGTCTCCAGGAGCTGCTGGCCAA
TTCACCGGGGGCTTTAAACAAGGAGCAGCTACGAACTTTGGAAGGGGAAC
ACGATAAAGACGAAGACA

BS10855.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6190-PA 2922 As-RA 1..802 17..818 4010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Ube3a-RA 3674 CG6190-RA 378..1179 17..818 4010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11209238..11209733 818..323 2480 100 Minus
3L 28110227 3L 11209836..11210093 324..67 1290 100 Minus
3L 28110227 3L 11210154..11210206 69..17 265 100 Minus
Blast to na_te.dros performed on 2015-02-13 09:14:42 has no hits.

BS10855.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 10:51:48 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:03 Download gff for BS10855.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6190-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:38:48 Download gff for BS10855.5prime
Subject Subject Range Query Range Percent Splice Strand
Ube3a-RA 367..1178 5..817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:57:35 Download gff for BS10855.5prime
Subject Subject Range Query Range Percent Splice Strand
Ube3a-RA 367..1178 5..817 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:57:35 Download gff for BS10855.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11209239..11209731 325..817 100 <- Minus
3L 11209836..11210090 70..324 100 <- Minus
3L 11210154..11210217 5..69 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:38:48 Download gff for BS10855.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11202339..11202831 325..817 100 <- Minus
arm_3L 11202936..11203190 70..324 100 <- Minus
arm_3L 11203254..11203317 5..69 93   Minus

BS10855.pep Sequence

Translation from 16 to 2937

> BS10855.pep
MNGGGGGEDDQHLPGVSSASGSAAGAVGGRATPEMKRSAVRSLIKRYFHQ
LQSGCGNANCSNANCASSGKVAPMTPNEVAARALQLFSQDAQLCEAFTSE
ANSPQDVDMLSPNDSSSSSSGSSTSTITSASTTTTTSRQSQSTPAAVVVP
VSSPYLTQSVPQLDIAGAEHSSGDSEPCTPTLAPVHSLDANSLIALYEQC
RAADSYDRICHAIGVVFSSVDRLGKSFIRSAEPAASSSLQELLANSPGAL
NKEQLRTLEGEHDKDEDSTQQVDEQSESAANATATAESVESEAEPEEEDD
DVCSSQSSDTLVDLPGLRRVQRLLFGCQIRAITEKLTSSVIQLSDWVIYM
RTDWERVIHCLVICFDLATNTNNSVVDMDYLDRVLPKLCQAASAMPVPAQ
ARLARIWAAHCSDQLHSLIAACQQQITLQVLLDEESMRENESIISVTKVL
KIVFYANILASELERPSCRVPLEDRTEAATASGSAAVEDDLFVYNSLLEP
HMPKFAEDQFEKELQVSAIDCRKPLIPLEEFYNEALSENIQMHHDYLSYK
TLAMESEIGSGHANYFSFMLYAFILTPSTKVDALYYDSRMRMYSERYSSL
HSILNNIGQVGQEDNPRPDLKLTVRRDQLINDALIGLEMVAMSNPKDLKK
QLVVEFVGEQGIDEGGVSKEFFQLIVEEIFNPAFGMFIQQEETNNMWFNA
TPFENGAQFTLIGIIIGLAIYNNVTLAVNFPMVVYRKLIGYCGTFADLSD
WSPALYKSLKSMLDYQGQDMEEVFEQTFKISYSDVFGDVVQHELVPNGQD
VLVGQHNKELFVNLYSDFLLNTNIEQQFNAFRKGFEMVTDESPLKLLFRP
EEIEMLVCGSREFDFVELENSTVYEGGYTEKSQYIQDFWSIVHAMPSEDK
HKLLEFTTGSARVPVGGLKCLRLLITRHGPDSDRLPTSHTCFNVLLLPEY
SSREKLEERLMKAINYSKGFGML*

BS10855.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
Ube3a-PA 973 CG6190-PA 1..973 1..973 4990 100 Plus
CG9153-PA 1058 CG9153-PA 587..1058 479..973 730 34.9 Plus
CG9153-PB 1058 CG9153-PB 587..1058 479..973 730 34.9 Plus
CG9153-PC 1062 CG9153-PC 592..1062 479..973 730 35.1 Plus
Su(dx)-PF 949 CG4244-PF 594..946 620..970 455 32.2 Plus