Clone Sequence Records
BS10856.3prime Sequence
821 bp (819 high quality bases) assembled on 2006-04-19
> BS10856.3prime
ATGGTCTAGAAAGCTTTTAGAGCGAACCAAAGCGGTCGAACGAATTCACC
AAACACTTTTGTTTCTCGAAGTTCAGGGAGCGCGAAATACAGGACAGATT
TTTGAGGCACGCATAAGCCTGCTCCTCCATAAACATTTGATCTCTGGACT
TGCCACAAGCGACGCGTGCCCACTTGGGATCAATGACATGATCGTAGGTC
AAGCCACCGCGGTACTTGTTAATTCTGCGATTATGGAATGGTCGATTCTC
CTTTCTGCCCTCGTCGAACGGCAGGTCCTGTTCGCTGCACAGCGTGTCCT
TCAAAATATCGCCCGGCGATGTGAGAAACTTGCTGGGCGTCTCGGTTTCG
AAGGGTTGAATCCTCTTGGCGGAGCCAGCGTTGTATGGATGATTGGAGCT
CCAAGTTGAGAGCAATGACTTCCTGGCACGTTTCATATGCGGCGGCGACT
GAGCATTGTATTCGGTGCTTAGCGTTGAGTTCTGATCGGCGGCGCCCATC
ATTTTGGAATTGTTTGCGGTCAGCGAGTTGCTCAGATGCTCTTCATGGAT
GATTTCGGCCAGATCCTCCACCAGACTGGATGGGCTGGAGGGCTCGTATC
GACGACCGTCCCTCTTCTTGCCGATGGCAGCAAGTGCCTTTTTGAAGGGC
GTTGGTGTTCGTGGTCCAAGTTGACTCTTGTGTGGAGTTTCTATCGACGA
TGTCTCCATTTCCTTTTTGATCTCCATTCCAACGCGATTATAGACCTTGG
TTACCGGCGTGCTAGCCCGCAGATCCATATCTTCAAAGGTGGTCAGGCAA
GGCGACTTGAGGAAGTGACTC
BS10856.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9045-PA | 1974 | Myb-RA | 1170..1974 | 821..17 | 4025 | 100 | Minus |
| CG9045-PB | 1974 | Myb-RB | 1170..1974 | 821..17 | 4025 | 100 | Minus |
| CG9045-PD | 1974 | Myb-RD | 1170..1974 | 821..17 | 4025 | 100 | Minus |
| CG9045-PC | 1974 | Myb-RC | 1170..1974 | 821..17 | 4025 | 100 | Minus |
| CG9045-PE | 1974 | Myb-RE | 1170..1974 | 821..17 | 4025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myb-RE | 2903 | CG9045-RE | 1889..2694 | 821..16 | 4030 | 100 | Minus |
| Myb-RD | 2865 | CG9045-RD | 1826..2631 | 821..16 | 4030 | 100 | Minus |
| Myb-RB | 2732 | CG9045-RB | 1718..2523 | 821..16 | 4030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15855066..15855725 | 16..675 | 3300 | 100 | Plus |
| X | 23542271 | X | 15855788..15855935 | 674..821 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 17:08:59 has no hits.
BS10856.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:49 Download gff for
BS10856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-PC | 1170..1974 | 17..821 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:05 Download gff for
BS10856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9045-PE | 1170..1974 | 17..821 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:32:41 Download gff for
BS10856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-RD | 1824..2634 | 7..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:59:50 Download gff for
BS10856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-RB | 1718..2528 | 7..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:59:50 Download gff for
BS10856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15855061..15855725 | 7..675 | 99 | <- | Plus |
| X | 15855790..15855935 | 676..821 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:32:41 Download gff for
BS10856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15749094..15749758 | 7..675 | 99 | <- | Plus |
| arm_X | 15749823..15749968 | 676..821 | 100 | | Plus |
BS10856.5prime Sequence
854 bp (739 high quality bases) assembled on 2006-04-19
> BS10856.5prime
GAAGTTATCAGTCGACATGGCAAGTGCGAGCACTGAAAACGGCGAGGAGC
TGATGAATTACGGCAGCAATTCGGATTCGGAGGAGTCCGAGTACTCGGAG
AACGAGGATACCCAAGTTTGCGACAAGGATTCACAACAGAACAGCAATGC
CGATTCGGGCTATCCACTGGACTCGCCCGAACTACAGGACTCCAAGACGA
CGGGGCAAAAGGGACAGAACAAAAGCGGTAAAACTAGCATCGGTGCAGTG
CATCCGAACTATGGATTCGGCAAACGCTGGTCCAAGTCCGAGGATGTGTT
GCTCAAGCAGCTGGTGGAGACGCACGGTGAGAACTGGGAGATTATCGGAC
CGCATTTCAAGGATCGCCTGGAACAGCAAGTGCAGCAGCGTTGGGCCAAA
GTCCTCAATCCGGAGCTAATCAAGGGCCCGTGGACGCGGGACGAGGACGA
CATGGTTATTAAGCTGGTGCGCAACTTCGGGCCCAAGAAATGGACACTAA
TTGCACGATATCTGAACGGACGAATTGGGAAACAGTGCCGCGAGAGATGG
CACAACCACCTCAATCCGAATATCAAGAAAACGGCCTGGACCGAAAAGGA
GGACGAGATTATCTACCAGGCTCACTTGGAGCTGGGCAACCAGTGGGCAA
AGATTGCCAAACGTCTGCCCGGACGCACCGATAACGCCATTAAAAACCAT
TGGAATTCAACAATGCGTCGCAAATATGACGTCGAACGCAGATCGGTTAA
TGCATCTGGTAGCGATTTGAAGAGTTCGCGAACCCATCTCATCACGCTGA
TCAAGTCCGGTGGCATCAGCAAGTGTATGAATAATATGCAACATAACAAG
GAAT
BS10856.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9045-PA | 1974 | Myb-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
| CG9045-PB | 1974 | Myb-RB | 1..838 | 17..854 | 4190 | 100 | Plus |
| CG9045-PD | 1974 | Myb-RD | 1..838 | 17..854 | 4190 | 100 | Plus |
| CG9045-PC | 1974 | Myb-RC | 1..838 | 17..854 | 4190 | 100 | Plus |
| CG9045-PE | 1974 | Myb-RE | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:28:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myb-RE | 2903 | CG9045-RE | 720..1557 | 17..854 | 4190 | 100 | Plus |
| Myb-RD | 2865 | CG9045-RD | 657..1494 | 17..854 | 4190 | 100 | Plus |
| Myb-RB | 2732 | CG9045-RB | 549..1386 | 17..854 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15856267..15857104 | 854..17 | 4190 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 10:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 4421..4479 | 676..735 | 108 | 66.7 | Plus |
BS10856.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:50 Download gff for
BS10856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-PC | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:06 Download gff for
BS10856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9045-PE | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:32:58 Download gff for
BS10856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-RD | 655..1492 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:47 Download gff for
BS10856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-RB | 549..1386 | 17..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:47 Download gff for
BS10856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15856267..15857104 | 17..854 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:32:58 Download gff for
BS10856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15750300..15751137 | 17..854 | 100 | | Minus |
BS10856.complete Sequence
2006 bp assembled on 2008-08-15
GenBank Submission: KX805204
> BS10856.complete
GAAGTTATCAGTCGACATGGCAAGTGCGAGCACTGAAAACGGCGAGGAGC
TGATGAATTACGGCAGCAATTCGGATTCGGAGGAGTCCGAGTACTCGGAG
AACGAGGATACCCAAGTTTGCGACAAGGATTCACAACAGAACAGCAATGC
CGATTCGGGCTATCCACTGGACTCGCCCGAACTACAGGACTCCAAGACGA
CGGGGCAAAAGGGACAGAACAAAAGCGGTAAAACTAGCATCGGTGCAGTG
CATCCGAACTATGGATTCGGCAAACGCTGGTCCAAGTCCGAGGATGTGTT
GCTCAAGCAGCTGGTGGAGACGCACGGTGAGAACTGGGAGATTATCGGAC
CGCATTTCAAGGATCGCCTGGAACAGCAAGTGCAGCAGCGTTGGGCCAAA
GTCCTCAATCCGGAGCTAATCAAGGGCCCGTGGACGCGGGACGAGGACGA
CATGGTTATTAAGCTGGTGCGCAACTTCGGGCCCAAGAAATGGACACTAA
TTGCACGATATCTGAACGGACGAATTGGGAAACAGTGCCGCGAGAGATGG
CACAACCACCTCAATCCGAATATCAAGAAAACGGCCTGGACCGAAAAGGA
GGACGAGATTATCTACCAGGCTCACTTGGAGCTGGGCAACCAGTGGGCAA
AGATTGCCAAACGTCTGCCCGGACGCACCGATAACGCCATTAAAAACCAT
TGGAATTCAACAATGCGTCGCAAATATGACGTCGAACGCAGATCGGTTAA
TGCATCTGGTAGCGATTTGAAGAGTTCGCGAACCCATCTCATCACGCTGA
TCAAGTCCGGTGGCATCAGCAAGTGTATGAATAATATGCAACATAACAAG
GAATCTGGTGGTGAGGCAGTTAATAAATCCGAAAACGCCGATGGCGCTTC
GGTTACTGCCGTGAAAGGTGGTGATCTGGCACAGGAATCACAAGACGATC
ATCAAAAGGGATCCAATCTGGCACACCTCAGTATGCAGCATCTCATTAAG
TTGACCATGCCGCGCCAAACACCGATCATATTGAAGCGTACACGCAAACA
CATTCCCGAAACTCACCATCAGGCAGGATGTTCATCAAGTGAGACATTCA
ACCAGGAAGAAGCCGCCGGAAACGCCAGGTCGCGACCACCGAGTTCGCCC
GTCATATCGCCCATTAAGTCGCTACCCTTTTCACCGAGTCACTTCCTCAA
GTCGCCTTGCCTGACCACCTTTGAAGATATGGATCTGCGGGCTAGCACGC
CGGTAACCAAGGTCTATAATCGCGTTGGAATGGAGATCAAAAAGGAAATG
GAGACATCGTCGATAGAAACTCCACACAAGAGTCAACTTGGACCACGAAC
ACCAACGCCCTTCAAAAAGGCACTTGCTGCCATCGGCAAGAAGAGGGACG
GTCGTCGATACGAGCCCTCCAGCCCATCCAGTCTGGTGGAGGATCTGGCC
GAAATCATCCATGAAGAGCATCTGAGCAACTCGCTGACCGCAAACAATTC
CAAAATGATGGGCGCCGCCGATCAGAACTCAACGCTAAGCACCGAATACA
ATGCTCAGTCGCCGCCGCATATGAAACGTGCCAGGAAGTCATTGCTCTCA
ACTTGGAGCTCCAATCATCCATACAACGCTGGCTCCGCCAAGAGGATTCA
ACCCTTCGAAACCGAGACGCCCAGCAAGTTTCTCACATCGCCGGGCGATA
TTTTGAAGGACACGCTGTGCAGCGAACAGGACCTGCCGTTCGACGAGGGC
AGAAAGGAGAATCGACCATTCCATAATCGCAGAATTAACAAGTACCGCGG
TGGCTTGACCTACGATCATGTCATTGATCCCAAGTGGGCACGCGTCGCTT
GTGGCAAGTCCAGAGATCAAATGTTTATGGAGGAGCAGGCTTATGCGTGC
CTCAAAAATCTGTCCTGTATTTCGCGCTCCCTGAACTTCGAGAAACAAAA
GTGTTTGGTGAATTCGTTCGACCGCTTTGGTTCGCTCTAAAAGCTTTCTA
GACCAT
BS10856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myb-RE | 1974 | CG9045-PE | 1..1974 | 17..1990 | 9870 | 100 | Plus |
| Myb-RD | 1974 | CG9045-PD | 1..1974 | 17..1990 | 9870 | 100 | Plus |
| Myb-RB | 1974 | CG9045-PB | 1..1974 | 17..1990 | 9870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myb-RE | 2903 | CG9045-RE | 720..2694 | 17..1991 | 9875 | 100 | Plus |
| Myb-RD | 2865 | CG9045-RD | 657..2631 | 17..1991 | 9875 | 100 | Plus |
| Myb-RB | 2732 | CG9045-RB | 549..2523 | 17..1991 | 9875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15855788..15857104 | 1333..17 | 6585 | 100 | Minus |
| X | 23542271 | X | 15855066..15855725 | 1991..1332 | 3300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:07:18 has no hits.
BS10856.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:28:17 Download gff for
BS10856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-RD | 655..2634 | 17..2000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:43 Download gff for
BS10856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-RD | 655..2626 | 17..1988 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:29 Download gff for
BS10856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-RD | 655..2626 | 17..1988 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:21 Download gff for
BS10856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-RB | 549..2520 | 17..1988 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:21 Download gff for
BS10856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15855069..15855725 | 1332..1988 | 100 | <- | Minus |
| X | 15855790..15857104 | 17..1331 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:43 Download gff for
BS10856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15749102..15749758 | 1332..1988 | 100 | <- | Minus |
| arm_X | 15749823..15751137 | 17..1331 | 100 | | Minus |
BS10856.pep Sequence
Translation from 16 to 1989
> BS10856.pep
MASASTENGEELMNYGSNSDSEESEYSENEDTQVCDKDSQQNSNADSGYP
LDSPELQDSKTTGQKGQNKSGKTSIGAVHPNYGFGKRWSKSEDVLLKQLV
ETHGENWEIIGPHFKDRLEQQVQQRWAKVLNPELIKGPWTRDEDDMVIKL
VRNFGPKKWTLIARYLNGRIGKQCRERWHNHLNPNIKKTAWTEKEDEIIY
QAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRKYDVERRSVNASGSD
LKSSRTHLITLIKSGGISKCMNNMQHNKESGGEAVNKSENADGASVTAVK
GGDLAQESQDDHQKGSNLAHLSMQHLIKLTMPRQTPIILKRTRKHIPETH
HQAGCSSSETFNQEEAAGNARSRPPSSPVISPIKSLPFSPSHFLKSPCLT
TFEDMDLRASTPVTKVYNRVGMEIKKEMETSSIETPHKSQLGPRTPTPFK
KALAAIGKKRDGRRYEPSSPSSLVEDLAEIIHEEHLSNSLTANNSKMMGA
ADQNSTLSTEYNAQSPPHMKRARKSLLSTWSSNHPYNAGSAKRIQPFETE
TPSKFLTSPGDILKDTLCSEQDLPFDEGRKENRPFHNRRINKYRGGLTYD
HVIDPKWARVACGKSRDQMFMEEQAYACLKNLSCISRSLNFEKQKCLVNS
FDRFGSL*
BS10856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myb-PE | 657 | CG9045-PE | 1..657 | 1..657 | 3482 | 100 | Plus |
| Myb-PD | 657 | CG9045-PD | 1..657 | 1..657 | 3482 | 100 | Plus |
| Myb-PB | 657 | CG9045-PB | 1..657 | 1..657 | 3482 | 100 | Plus |
| Myb-PA | 657 | CG9045-PA | 1..657 | 1..657 | 3482 | 100 | Plus |
| Cdc5-PB | 814 | CG6905-PB | 9..92 | 137..221 | 164 | 37.6 | Plus |
