Clone Sequence Records
BS10858.3prime Sequence
887 bp (868 high quality bases) assembled on 2006-04-19
> BS10858.3prime
ATGGTCTAGAAAGCTTTTATATCGACAATTTCGACATTGATATCTTAAAA
GAATTAGCGAGCTGGTCGTTCTCATTGGTCGGGTGCGCTTTGATTTTGTG
AATGGCTGCATCAGTATGCTGTTGCATCCTGGCATACGAAGGAATAAGCT
TATCGTCTTCGTCCTCCGGCTCACTGCTCGACTCCTCGTTCGATTCATCT
GCTTTAATCAGTATATGTGGTCTCTGCCCGGAGTCCCTCTTCTTGAGCAG
ATATGTACCATGTTTTTTGCACTCATTGATTACAAACTTGAAGTCCGAAT
GGTGACGAAGGGTGACCGGATTGCCAACCAGGATCAGAAGTGCTTTAGCT
CTGGACAGAAGAACGTTTACACGACGAGGATTGCACATAAATCCCATGTT
TGTGAAGGATTTAACCAAACTAGCAATGATTATGGTCTTTTCGCGACCCT
GGTATGTCTCCACGCTGCCTACCTCTACATTTGGGTATCCCTTACTTTGG
AGTAGCTTGGTAACTAGTTTACCCTGAGCCGTATACGGCGCAACAATGCC
AACGTCCTCCTGTCCGACCACGCGATCGTTTATCAGGCGTTTTACATACC
AACATATAACTTCTGCCTCCAAATTATTGTAAGAGCTAGTGGAGTTCTGC
TCCCGGTTGGTTACTCCATGAGTGGCCTGAAATATTATCGGGAACTGTGG
ATTCGTTAGAACGCTCCAGTTGGCTGCTAGATTCACATCCATAGCAGGAG
CCTGAGCTTTTAGCTCTCCGTTATAGTAGAGCTCATTAAACAGGCGTACA
ATCTGCGGATGGGATCGATAGTTACGACATAGACGCATCTGCCGGTTGCG
ATCGTAGTTTCCGTTTTCATCAGATTTGTAGCAATCG
BS10858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6967-PB | 2433 | CG6967-RB | 1563..2433 | 887..17 | 4355 | 100 | Minus |
| CG6967-PA | 2478 | CG6967-RA | 1608..2478 | 887..17 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6967-RD | 3474 | CG6967-RD | 1777..2649 | 887..15 | 4365 | 100 | Minus |
| CG6967-RC | 3410 | CG6967-RC | 1713..2585 | 887..15 | 4365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17064849..17065721 | 887..15 | 4365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 11:19:18 has no hits.
BS10858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:53 Download gff for
BS10858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-PA | 1608..2478 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:12 Download gff for
BS10858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-PA | 1608..2478 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:36:33 Download gff for
BS10858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 1713..2585 | 15..887 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:11:20 Download gff for
BS10858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 1713..2585 | 15..887 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:11:20 Download gff for
BS10858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17064849..17065721 | 15..887 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:36:33 Download gff for
BS10858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12952354..12953226 | 15..887 | 100 | | Minus |
BS10858.5prime Sequence
893 bp (845 high quality bases) assembled on 2006-04-19
> BS10858.5prime
GAAGTTATCAGTCGACATGCACCAAACAGAGGATTTGAAATTAATAGATC
GGCAGCTATCGAAAATAGCTCGTAAAAGATATAAATGGCAGGAAAAGAAT
AAAACTACGTTTGTTTTATGCACACATGGAATGGTCAACGACGACGACAA
AGTCAAACAATGCAACCCAGAGGAAAAACAACAGCAACTTTTATCCATGA
TGCGGGAATTGCCATATTATCCGCCAAGTAACGAGATGATAGAGGCGAAC
ACAAACCAGGATTTGAGCGCAAATAATAGTGTGTTCGGCGATTTTATGAA
GACCAAACGCTTGGAGTTTTACAATGTGTGCTCCGTGATGCAAACGCTGT
TAACCATCGACGATCTGTCCAATATGGAGCTATACGCCCAACTGATCCAA
TCTGATGTGCCTGTGCAGCGCGTCTCCAAGCTGACATATAAAATAACTTT
CAAGAGCACGCCCGTGAATGCAGAGGACTTTGTTGCTCCCAATCTAGACC
AAGTGGTGCTGGTGCCCAAGGCTAGCCTTCTGGCATCTCCACTACCTAAA
CAATTGGTGCTGGCCTTGCTTCCGCATCCTCATGAAGATTTGGAGCCGGG
CGATCCAATGCTTCGCCATGTGGCTAGTGTGGACAAGGTCAGCAGCACCA
CTGTTCACGTGCGCTTCAGCCGCAAACATAAAGCGGTCTTGTCAGGACAG
CGCTTCTATGCCATTATCCGCTCCAGACGCCTTACAATCCGATACATGTA
TCGCGCACTCAATCTGCTCCAGGAGAGCCCCTTGGTGCGCCGCTACCTAT
TTCCGTTTCCCAGCTGGCTGACGCAGCTTGTGGACAATTCTCAGATTAAG
GTATGTTGCGACGGCCATCTGCCTAATTGGATGCAAGAAAGGC
BS10858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6967-PA | 2478 | CG6967-RA | 1..877 | 17..893 | 4360 | 99.8 | Plus |
| CG6967-PB | 2433 | CG6967-RB | 126..832 | 187..893 | 3510 | 99.8 | Plus |
| CG6967-PB | 2433 | CG6967-RB | 1..61 | 126..186 | 305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:07:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6967-RC | 3410 | CG6967-RC | 106..982 | 17..893 | 4370 | 99.9 | Plus |
| CG6967-RD | 3474 | CG6967-RD | 340..1046 | 187..893 | 3520 | 99.9 | Plus |
| CG6967-RD | 3474 | CG6967-RD | 106..275 | 17..186 | 850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17063171..17063877 | 187..893 | 3520 | 99.9 | Plus |
| 2R | 25286936 | 2R | 17062964..17063106 | 44..186 | 715 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 01:07:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 3944..3993 | 61..109 | 112 | 72 | Plus |
BS10858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:54 Download gff for
BS10858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:14 Download gff for
BS10858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:06:24 Download gff for
BS10858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 106..982 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:54 Download gff for
BS10858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 106..982 | 17..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:54 Download gff for
BS10858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17062880..17062906 | 17..43 | 100 | -> | Plus |
| 2R | 17062964..17063106 | 44..186 | 100 | -> | Plus |
| 2R | 17063171..17063877 | 187..893 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:06:24 Download gff for
BS10858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12950385..12950411 | 17..43 | 100 | -> | Plus |
| arm_2R | 12950469..12950611 | 44..186 | 100 | -> | Plus |
| arm_2R | 12950676..12951382 | 187..893 | 99 | | Plus |
BS10858.complete Sequence
2510 bp assembled on 2012-04-25
GenBank Submission: KX804427
> BS10858.complete
GAAGTTATCAGTCGACATGCACCAAACAGAGGATTTGAAATTAATAGATC
GGCAGCTATCGAAAATAGCTCGTAAAAGATATAAATGGCAGGAAAAGAAT
AAAACTACGTTTGTTTTATGCACACATGGAATGGTCAACGACGACGACAA
AGTCAAACAATGCAACCCAGAGGAAAAACAACAGCAACTTTTATCCATGA
TGCGGGAATTGCCATATTATCCGCCAAGTAACGAGATGATAGAGGCGAAC
ACAAACCAGGATTTGAGCGCAAATAATAGTGTGTTCGGCGATTTTATGAA
GACCAAACGCTTGGAGTTTTACAATGTGTGCTCCGTGATGCAAACGCTGT
TAACCATCGACGATCTGTCCAATATGGAGCTATACGCCCAACTGATCCAA
TCTGATGTGCCTGTGCAGCGCGTCTCCAAGCTGACATATAAAATAACTTT
CAAGAGCACGCCCGTGAATGCAGAGGACTTTGTTGCTCCCAATCTAGACC
AAGTGGTGCTGGTGCCCAAGGCTAGCCTTCTGGCATCTCCACTACCTAAA
CAATTGGTGCTGGCCTTGCTTCCGCATCCTCATGAAGATTTGGAGCCGGG
CGATCCAATGCTTCGCCATGTGGCTAGTGTGGACAAGGTCAGCAGCACCA
CTGTTCACGTGCGCTTCAGCCGCAAACATAAAGCGGTCTTGTCAGGACAG
CGCTTCTATGCCATTATCCGCTCCAGACGCCTTACAATCCGATACATGTA
TCGCGCACTCAATCTGCTCCAGGAGAGCCCCTTGGTGCGCCGCTACCTAT
TTCCGTTTCCCAGCTGGCTGACGCAGCTTGTGGACAATTCTCAGATTAAG
GTATGTTGCGACGGCCATCTGCCTAATTGGATGCAAGGAAGGCCACAAGA
GCCAGCTACTCCAACCTCGCTCTCTCTTCTTAATTCGACCATCTATTCCA
ACGCTGAGCAGTTAGAGGCCGTACAACGCATTGTTGCGGGACCAAGTACC
CAGGGACCATACATTCTATTCGGACCACCAGGCACTGGTAAGACCACTAC
CATTGTGGAGGCCATTCTACAGCTGCGCCTTCAACAACCACAAAGCCGTA
TACTCGTAACCGCCGGTTCGAACTCAGCATGTGACACAATCGCCCTGAAG
CTTTGCGAGTATATTGAAAGCAACATCCGTCTCCAGGAGCACTTTGCCCA
ACAGAAGCTGCCCGAACCTGATCACCAGTTGATTCGCGTGTACTCGCGCT
CCATTTATGAGAAGGGCTTTGCGTCCGTGCCGTCACTGCTGCTGAAAAAT
TCCAATTGCTCGAAGAGTATCTACGATCATATTAAAGCTTCACGTATTGT
AAAGTACGGCATTATCGTGGCCACGCTCTGCACAGTGGCACGCTTGGTTA
CTGATACCCTTGGTAGGTACAACTTCTTCACCCACATTTTCATCGACGAG
GCGGGCGCTTCGACTGAACCCGAGGCTTTAATCGGTATTATGGGTATTAA
GCAGACAGCAGATTGCCATGTGATTTTGTCCGGGGATCATAAGCAGCTCG
GCGCCGTGATAAAAAGTAATCGGGCCGCTTCTTTGGGATTAAGCCGGTCT
CTAATGGAGAGGCTCCTCCAATCCGATTGCTACAAATCTGATGAAAACGG
AAACTACGATCGCAACCGGCAGATGCGTCTATGTCGTAACTATCGATCCC
ATCCGCAGATTGTACGCCTGTTTAATGAGCTCTACTATAACGGAGAGCTA
AAAGCTCAGGCTCCTGCTATGGATGTGAATCTAGCAGCCAACTGGAGCGT
TCTAACGAATCCACAGTTCCCGATAATATTTCAGGCCACTCATGGAGTAA
CCAACCGGGAGCAGAACTCCACTAGCTCTTACAATAATTTGGAGGCAGAA
GTTATATGTTGGTATGTAAAACGCCTGATAAACGATCGCGTGGTCGGACA
GGAGGACGTTGGCATTGTTGCGCCGTATACGGCTCAGGGTAAACTAGTTA
CCAAGCTACTCCAAAGTAAGGGATACCCAAATGTAGAGGTAGGCAGCGTG
GAGACATACCAGGGTCGCGAAAAGACCATAATCATTGCTAGTTTGGTTAA
ATCCTTCACAAACATGGGATTTATGTGCAATCCTCGTCGTGTAAACGTTC
TTCTGTCCAGAGCTAAAGCACTTCTGATCCTGGTTGGCAATCCGGTCACC
CTTCGTCACCATTCGGACTTCAAGTTTGTAATCAATGAGTGCAAAAAACA
TGGTACATATCTGCTCAAGAAGAGGGACTCCGGGCAGAGACCACATATAC
TGATTAAAGCAGATGAATCGAACGAGGAGTCGAGCAGTGAGCCGGAGGAC
GAAGACGATAAGCTTATTCCTTCGTATGCCAGGATGCAACAGCATACTGA
TGCAGCCATTCACAAAATCAAAGCGCACCCGACCAATGAGAACGACCAGC
TCGCTAATTCTTTTAAGATATCAATGTCGAAATTGTCGATATAAAAGCTT
TCTAGACCAT
BS10858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6967-RD | 2295 | CG6967-PD | 1..2295 | 200..2494 | 11475 | 100 | Plus |
| CG6967-RC | 2295 | CG6967-PC | 1..2295 | 200..2494 | 11475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6967-RC | 3410 | CG6967-RC | 106..2585 | 17..2496 | 12400 | 100 | Plus |
| CG6967-RD | 3474 | CG6967-RD | 340..2649 | 187..2496 | 11550 | 100 | Plus |
| CG6967-RD | 3474 | CG6967-RD | 106..275 | 17..186 | 850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:13:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17064254..17065721 | 1029..2496 | 7340 | 100 | Plus |
| 2R | 25286936 | 2R | 17063171..17064016 | 187..1032 | 4230 | 100 | Plus |
| 2R | 25286936 | 2R | 17062964..17063106 | 44..186 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:13:14 has no hits.
BS10858.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:20:00 Download gff for
BS10858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 104..2583 | 17..2496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:37 Download gff for
BS10858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 104..2579 | 17..2492 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:03 Download gff for
BS10858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 106..2581 | 17..2492 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:32 Download gff for
BS10858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RA | 104..2579 | 17..2492 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:50 Download gff for
BS10858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 106..2581 | 17..2492 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:50 Download gff for
BS10858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17062880..17062906 | 17..43 | 100 | -> | Plus |
| 2R | 17062964..17063106 | 44..186 | 100 | -> | Plus |
| 2R | 17063171..17064015 | 187..1031 | 100 | -> | Plus |
| 2R | 17064257..17065717 | 1032..2492 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:03 Download gff for
BS10858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12950385..12950411 | 17..43 | 100 | -> | Plus |
| arm_2R | 12950469..12950611 | 44..186 | 100 | -> | Plus |
| arm_2R | 12950676..12951520 | 187..1031 | 100 | -> | Plus |
| arm_2R | 12951762..12953222 | 1032..2492 | 100 | | Plus |
BS10858.pep Sequence
Translation from 16 to 2493
> BS10858.pep
MHQTEDLKLIDRQLSKIARKRYKWQEKNKTTFVLCTHGMVNDDDKVKQCN
PEEKQQQLLSMMRELPYYPPSNEMIEANTNQDLSANNSVFGDFMKTKRLE
FYNVCSVMQTLLTIDDLSNMELYAQLIQSDVPVQRVSKLTYKITFKSTPV
NAEDFVAPNLDQVVLVPKASLLASPLPKQLVLALLPHPHEDLEPGDPMLR
HVASVDKVSSTTVHVRFSRKHKAVLSGQRFYAIIRSRRLTIRYMYRALNL
LQESPLVRRYLFPFPSWLTQLVDNSQIKVCCDGHLPNWMQGRPQEPATPT
SLSLLNSTIYSNAEQLEAVQRIVAGPSTQGPYILFGPPGTGKTTTIVEAI
LQLRLQQPQSRILVTAGSNSACDTIALKLCEYIESNIRLQEHFAQQKLPE
PDHQLIRVYSRSIYEKGFASVPSLLLKNSNCSKSIYDHIKASRIVKYGII
VATLCTVARLVTDTLGRYNFFTHIFIDEAGASTEPEALIGIMGIKQTADC
HVILSGDHKQLGAVIKSNRAASLGLSRSLMERLLQSDCYKSDENGNYDRN
RQMRLCRNYRSHPQIVRLFNELYYNGELKAQAPAMDVNLAANWSVLTNPQ
FPIIFQATHGVTNREQNSTSSYNNLEAEVICWYVKRLINDRVVGQEDVGI
VAPYTAQGKLVTKLLQSKGYPNVEVGSVETYQGREKTIIIASLVKSFTNM
GFMCNPRRVNVLLSRAKALLILVGNPVTLRHHSDFKFVINECKKHGTYLL
KKRDSGQRPHILIKADESNEESSSEPEDEDDKLIPSYARMQQHTDAAIHK
IKAHPTNENDQLANSFKISMSKLSI*
BS10858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6967-PD | 764 | CG6967-PD | 1..764 | 62..825 | 3933 | 100 | Plus |
| CG6967-PC | 764 | CG6967-PC | 1..764 | 62..825 | 3933 | 100 | Plus |
| CG6701-PD | 1333 | CG6701-PD | 356..1039 | 50..747 | 993 | 35.2 | Plus |
| CG6701-PC | 1333 | CG6701-PC | 356..1039 | 50..747 | 993 | 35.2 | Plus |
| CG6701-PB | 1333 | CG6701-PB | 356..1039 | 50..747 | 993 | 35.2 | Plus |
