Clone BS10860 Report

Search the DGRC for BS10860

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG1951-RA
Protein status:BS10860.pep: full length peptide match
Sequenced Size:2540

Clone Sequence Records

BS10860.complete Sequence

2540 bp assembled on 2009-12-07

GenBank Submission: KX802677

> BS10860.complete
GAAGTTATCAGTCGACATGGACATGATAAACAAGTTCTACTCATCCGCCG
TACAGACGGTGTCCACACTGTCCGGCGTTCTGCCCGGGAACAATGTGACG
CGGGAGTACGAGGTGCTGGAACAGGTGTGCACTGCCGGAGTGGGTCTGAT
GTGGAAGGTGTACAATGGCCACAAGAAGAGCACCAAACAGGAAGTGTCCG
TCTTCGTGTTCGAGAAAAAGTCGTTGGAGCGCTGGTCGAAGGATGACCGG
GAGACCATGCTGGAAACACTGCGTCGCGGGGTTCAACAGCTAACAAAAAT
TCGACATCCTCACGTGCTAACCGTACAGCATCCACTGGAGGAGAGTCGGG
ACTCGCTTGCCTTCGCCACGGAGCCGGTTTTTGCCTCCCTAGCCAACGTG
GTCGGCGACAACGTCCGCTCCGAAAAGAAGCTCTATGATGTAGAGATTCG
ACACGGTCTGCTGCAGCTCTTCGATGGCCTGCAGTTCCTTCACCAAGACG
CCAAGATTGTGCACCGCAACATTAGCGCCGAGACAATCGTGATCAACAAG
AACCGCAGCTGGAAGCTGTTCGGATTTGATTTCTGCATTGCCAACCAACC
GGCCACCGATGGCACACCCCACTGGCCCTTTCGGGAGTACACCACATCCC
TGCACGTCCTGGCACAGCCCAGCTTGGAGTACACAGCACCGGAGCTGGCC
TTGAACAGTGTCAACACACCAGACAGTGATCTGTTCTCATTGGGCGTTCT
AATTTTCACCATTTATGCCGGCAAGCCCCTGAAAATGTTTGGCAGTGATT
ACAGCAGCTTTCGTCGCTACGCAAATGATCTGAACCAGCGAAAGTATCCA
CCCATGAACGCAGTTCCCAGCGAGCTGACTGAAAGCCTTAAAGCGCTGCT
GCATCCCAGTGCCAACCTGCGACCGAAGCTGCATGAGCTAAAGCAGATCG
CCTACTTTCAAGATGTCGGGGTTAAGACACTTAGCTATTTGGACTCGCTA
TACCAGTGGGACAACCTGCAGAAGTCAAAGTTTTATAAGGGTCTACCGCA
GATCATTCCGACGCTACCGCACCGGGTCAATTTGCATTCGATTCTTCCCT
ATCTCGTCAAAGAGTTCGTCAACTCGCCAATGATACCGTTTGTGCTGCCC
AACGTTTTGCTTATTGCTGAGATGAGCAGCCAACGAGAGTACTGCGACCA
CATCCTTCCGCACTTGAAGCCGATCTTTAAACTTACGGACCCCATCCAGA
TTCTGCTGATCTTTATGCAGAAAATGGATCTGCTGCTCAAGCTAACGCCA
GCGGAAGAGGTGAAGCAGAGTGTTCTGCCGCTACTTTATCGCTCTCTGGA
ATGCGACATGCCACAGATCCAGGACCTCTGTCTAGCGGTGCTTCCAACAT
TTTCCACTCTGATTGACTACAACGCCATGAAGAACTCCGTGCTGCCACGA
ATCAAGAAACTGTGTCTGCAGAGCAGCAATGTGTCGGTAAAGGTTAACTG
CCTGATCTCCATCGGCAAGTTGTTGGAAAACTTGGACAAGTGGCTTGTGC
TAGACGAGATTTTGCCATTCTTGCAGCAGATCCAAAGCCGCGAACCTGCT
ATCATTATGGGAATTATTGGCATTTATAAAATCGCAATGACAAATACCAA
ACTGGGCATAACAAAGGACGTGATGGCACACAAATGCATCCCTTATCTGG
TACCATTAAGTGTGGAGAACGGCCTTACCATTGCTCAATTCAACACGATT
ATAAGCCTCATCAAGGAGATGATGGGGCGGGTGGAACAGGAGCAGCGGGA
AAAGCTGCAGCAGCTGTCCACCATACAGAGAGACAATAAACCCAAAGACG
CTTCCGAAATATTGGCCAACGAGCTGGAGAACTCTACTCTCTCCCCCTAC
GGTTCCATCAATGGTAATAAGATCAACGATGACATGTTCTCCGGATTCAC
TGTTGGACAGCCGAAAGCAGCCATCGGCGCTGCAATAGCACCGGCTAAAG
CTAGGGAGCAGCTCAAAATATCGCACAATACCATATCAGCTCCGCCAGCA
GCCAGACCTGACATCCTCTCCTCGATGATGCAGAGCAACCTCACTGGTCT
GGGTACAATTACAGTGGCAGCTGCTCCGCCACCTACAACTACACAAATGC
CGTCAAACAATGGTTGGCACAGTGCGAATCCCCTTGTGATGAACCATCAG
TTGGCCTCTCCTCAAGCCAGCAACAACAATTCCTTTTCGCTGGACGACCT
GGATCCCTTCGCTGGTGGCAGACCCTCTGTTGGAGCCCCCAAAGCCAACA
ACACAAACGGTGCCAACATGTATACGGTGCAACAGCCTACGGTTAACTAC
ATTTATCCTACTGGCTACAGTCTGAACAGCATCCAGCAGCATCAGCAGCA
GCAACTGCTGGGTAAGCCCAGTCAAGCACCCACGCTCCAGCCGCAGACAC
AGCCGCTCCTGCCAACTGATAACCAGAACCTCAACGCACTTTCCCAGCAA
GACATACTTAACTTTTTGAACTAGAAGCTTTCTAGACCAT

BS10860.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1951-RA 2508 CG1951-PA 1..2508 17..2524 12540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1951-RA 3224 CG1951-RA 108..2616 17..2525 12545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29028366..29029243 743..1620 4390 100 Plus
3R 32079331 3R 29027536..29028137 143..744 3010 100 Plus
3R 32079331 3R 29029818..29030330 2013..2525 2550 99.8 Plus
3R 32079331 3R 29029297..29029517 1619..1839 1105 100 Plus
3R 32079331 3R 29029577..29029753 1840..2016 885 100 Plus
3R 32079331 3R 29027343..29027471 17..145 645 100 Plus
Blast to na_te.dros performed 2014-11-27 10:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2461 2375..2499 135 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6711..6842 2348..2480 130 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6893 2364..2485 130 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7346..7385 2014..2052 116 80 Plus

BS10860.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:28 Download gff for BS10860.complete
Subject Subject Range Query Range Percent Splice Strand
CG1951-RA 118..2625 17..2524 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:43 Download gff for BS10860.complete
Subject Subject Range Query Range Percent Splice Strand
CG1951-RA 108..2615 17..2524 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:39 Download gff for BS10860.complete
Subject Subject Range Query Range Percent Splice Strand
CG1951-RA 118..2625 17..2524 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:10 Download gff for BS10860.complete
Subject Subject Range Query Range Percent Splice Strand
CG1951-RA 108..2615 17..2524 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:10 Download gff for BS10860.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29027343..29027469 17..143 100 -> Plus
3R 29027537..29028136 144..743 100 -> Plus
3R 29028367..29029242 744..1619 100 -> Plus
3R 29029298..29029517 1620..1839 100 -> Plus
3R 29029577..29029753 1840..2016 100 -> Plus
3R 29029822..29030329 2017..2524 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:43 Download gff for BS10860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24853065..24853191 17..143 100 -> Plus
arm_3R 24853259..24853858 144..743 100 -> Plus
arm_3R 24854089..24854964 744..1619 100 -> Plus
arm_3R 24855020..24855239 1620..1839 100 -> Plus
arm_3R 24855299..24855475 1840..2016 100 -> Plus
arm_3R 24855544..24856051 2017..2524 100   Plus

BS10860.3prime Sequence

908 bp (805 high quality bases) assembled on 2006-04-19

> BS10860.3prime
ATGGTCTAGAAAGCTTCTAGTTCAAAAAGTTAAGTATGTCTTGCTGGGAA
AGTGCGTTGAGGTTCTGGTTATCAGTTGGCAGGAGCGGCTGTGTCTGCGG
CTGGAGCGTGGGTGCTTGACTGGGCTTACCCAGCAGTTGCTGCTGCTGAT
GCTGCTGGATGCTGTTCAGACTGTAGCCAGTAGGATAAATGTAGTTAACC
GTAGGCTGTTGCACCGTATACATGTTGGCACCGTTTGTGTTGTTGGCTTT
GGGGGCTCCAACAGAGGGTCTGCCACCAGCGAAGGGATCCAGGTCGTCCA
GCGAAAAGGAATTGTTGTTGCTGGCTTGAGGAGAGGCCAACTGATGGTTC
ATCACAAGGGGATTCGCACTGTGCCAACCATTGTTTGACGGCATTTGTGT
AGTTGTAGGTGGCGGAGCAGCTGCCACTGTAATTGTACCCAGACCAGTGA
GGTTGCTCTGCATCATCGAGGAGAGGATGTCAGGTCTGGCTGCTGGCGGA
GCTGATATGGTATTGTGCGATATTTTGAGCTGCTCCCTAGCTTTAGCCGG
TGCTATTGCAGCGCCGATGGCTGCTTTCGGCTGTCCAACAGTGAATCCGG
AGAACATGTCATCGTTGATCTTATTACCATTGATGGAACCGTAGGGGGAG
AGAGTAGAGTTCTCCAGCTCGTTGGCCAATATTTCGGAAGCGTCTTTGGG
TTTATTGTCTCTCTGTATGGTGGACAGCTGCTGCAGCTTTTCCCGCTGCT
CCTGTTCCACCCGCCCCATCATCTCCTTGATGAGGCTTATAATCGTGTTG
AATTGAGCAATGGTAAGGCCGTTCTCCACACTTAATGGTACCAGATAAGG
GATGCATTTGTGTGCCATCACGTTCTTTGTTATGCCCAGTTTGGTATTTG
TCATTGCG

BS10860.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1951-PA 2508 CG1951-RA 1617..2508 908..17 4435 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1951-RA 3224 CG1951-RA 1724..2616 908..16 4450 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29029818..29030330 528..16 2550 99.8 Minus
3R 32079331 3R 29029311..29029517 908..702 1020 99.5 Minus
3R 32079331 3R 29029577..29029753 701..525 885 100 Minus
Blast to na_te.dros performed 2015-02-03 17:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2461 166..42 135 60.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6711..6842 193..61 130 60.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6893 177..56 130 60.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7346..7385 527..489 116 80 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2391 177..133 114 75.6 Minus

BS10860.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:57 Download gff for BS10860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1951-PA 1617..2508 17..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:18 Download gff for BS10860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1951-PA 1617..2508 17..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:33:57 Download gff for BS10860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1951-RA 1724..2616 16..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:00:53 Download gff for BS10860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1951-RA 1724..2616 16..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:00:53 Download gff for BS10860.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29029311..29029517 702..908 99 -> Minus
3R 29029577..29029753 525..701 100 -> Minus
3R 29029822..29030330 16..524 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:33:57 Download gff for BS10860.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24855033..24855239 702..908 99 -> Minus
arm_3R 24855299..24855475 525..701 100 -> Minus
arm_3R 24855544..24856052 16..524 100   Minus

BS10860.5prime Sequence

918 bp (738 high quality bases) assembled on 2006-04-19

> BS10860.5prime
GAAGTTATCAGTCGACATGGACATGATAAACAAGTTCTACTCATCCGCCG
TACAGACGGTGTCCACACTGTCCGGCGTTCTGCCCGGGAACAATGTGACG
CGGGAGTACGAGGTGCTGGAACAGGTGTGCACTGCCGGAGTGGGTCTGAT
GTGGAAGGTGTACAATGGCCACAAGAAGAGCACCAAACAGGAAGTGTCCG
TCTTCGTGTTCGAGAAAAAGTCGTTGGAGCGCTGGTCGAAGGATGACCGG
GAGACCATGCTGGAAACACTGCGTCGCGGGGTTCAACAGCTAACAAAAAT
TCGACATCCTCACGTGCTAACCGTACAGCATCCACTGGAGGAGAGTCGGG
ACTCGCTTGCCTTCGCCACGGAGCCGGTTTTTGCCTCCCTAGCCAACGTG
GTCGGCGACAACGTCCGCTCCGAAAAGAAGCTCTATGATGTAGAGATTCG
ACACGGTCTGCTGCAGCTCTTCGATGGCCTGCAGTTCCTTCACCAAGACG
CCAAGATTGTGCACCGCAACATTAGCGCCGAGACAATCGTGATCAACAAG
AACCGCAGCTGGAAGCTGTTCGGATTTGATTTCTGCATTGCCAACCAACC
GGCCACCGATGGCACACCCCACTGGCCCTTTCGGGAGTACACCACATCCC
TGCACGTCCTGGCACAGCCCAGCTTGGAGTACACAGCACCGGAGCTGGCC
TTGAACAGTGTCAACACACCAGACAGTGATCTGTTCTCATTGGGCGTTCT
AATTTTCACCATTTATGCCGGCAAGCCCCTGAAAATGTTTGGCAGTGATT
ACAGCAGCTTTCGTCGCTACGCAAATGATCTGAAACAGCGAAAGTATCCA
CCCATGAACGCAGTTCCCAGCGAGCTGACTGAAAGCCTTAAGCGCTGCTG
CATCCCAGTGCCAACCTG

BS10860.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1951-PA 2508 CG1951-RA 1..875 17..891 4350 99.8 Plus
CG1951-PA 2508 CG1951-RA 875..903 890..918 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1951-RA 3224 CG1951-RA 108..1010 17..918 4475 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29027536..29028137 143..744 3010 100 Plus
3R 32079331 3R 29028366..29028542 743..918 820 98.9 Plus
3R 32079331 3R 29027343..29027471 17..145 645 100 Plus
Blast to na_te.dros performed 2015-02-12 01:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 1785..1828 499..456 112 72.7 Minus

BS10860.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:59 Download gff for BS10860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1951-PA 1..903 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:20 Download gff for BS10860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1951-PA 1..903 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:23:31 Download gff for BS10860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1951-RA 104..1010 9..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:44 Download gff for BS10860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1951-RA 104..1010 9..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:44 Download gff for BS10860.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29027339..29027469 9..143 97 -> Plus
3R 29027537..29028136 144..743 100 -> Plus
3R 29028367..29028542 744..918 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:23:31 Download gff for BS10860.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24853061..24853191 9..143 97 -> Plus
arm_3R 24853259..24853858 144..743 100 -> Plus
arm_3R 24854089..24854264 744..918 98   Plus

BS10860.pep Sequence

Translation from 16 to 2523

> BS10860.pep
MDMINKFYSSAVQTVSTLSGVLPGNNVTREYEVLEQVCTAGVGLMWKVYN
GHKKSTKQEVSVFVFEKKSLERWSKDDRETMLETLRRGVQQLTKIRHPHV
LTVQHPLEESRDSLAFATEPVFASLANVVGDNVRSEKKLYDVEIRHGLLQ
LFDGLQFLHQDAKIVHRNISAETIVINKNRSWKLFGFDFCIANQPATDGT
PHWPFREYTTSLHVLAQPSLEYTAPELALNSVNTPDSDLFSLGVLIFTIY
AGKPLKMFGSDYSSFRRYANDLNQRKYPPMNAVPSELTESLKALLHPSAN
LRPKLHELKQIAYFQDVGVKTLSYLDSLYQWDNLQKSKFYKGLPQIIPTL
PHRVNLHSILPYLVKEFVNSPMIPFVLPNVLLIAEMSSQREYCDHILPHL
KPIFKLTDPIQILLIFMQKMDLLLKLTPAEEVKQSVLPLLYRSLECDMPQ
IQDLCLAVLPTFSTLIDYNAMKNSVLPRIKKLCLQSSNVSVKVNCLISIG
KLLENLDKWLVLDEILPFLQQIQSREPAIIMGIIGIYKIAMTNTKLGITK
DVMAHKCIPYLVPLSVENGLTIAQFNTIISLIKEMMGRVEQEQREKLQQL
STIQRDNKPKDASEILANELENSTLSPYGSINGNKINDDMFSGFTVGQPK
AAIGAAIAPAKAREQLKISHNTISAPPAARPDILSSMMQSNLTGLGTITV
AAAPPPTTTQMPSNNGWHSANPLVMNHQLASPQASNNNSFSLDDLDPFAG
GRPSVGAPKANNTNGANMYTVQQPTVNYIYPTGYSLNSIQQHQQQQLLGK
PSQAPTLQPQTQPLLPTDNQNLNALSQQDILNFLN*

BS10860.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1951-PA 835 CG1951-PA 1..835 1..835 4307 100 Plus
CG34356-PE 834 CG34356-PE 6..638 3..598 792 29.3 Plus
CG34356-PD 834 CG34356-PD 6..638 3..598 792 29.3 Plus
CG34356-PF 854 CG34356-PF 6..638 3..598 792 29.3 Plus
yata-PA 873 CG1973-PA 15..737 31..820 326 21.6 Plus