Clone Sequence Records
BS10862.3prime Sequence
933 bp (830 high quality bases) assembled on 2006-04-19
> BS10862.3prime
ATGGTCTAGAAAGCTTCTAGCTCGTGCGCGTCCTCTTAGCTGGCGGCTGC
TCCGACTGGCGCGTCATAAAGGTCAGCTGTGTCATGTACTTGATGATGTC
GCGCACTTGCACCAGTGGCATGTTTTCGTTGTAGTTGCGATCGTACTCCA
TCAGGATCTGCACTTGTCGCCGATTTGCCTTGTAGAGCTCCACGCCGAGG
GCCTCGATCAATCGCTTGCAATGATCCAGCGGCACTGAGGGGAAGAAGTT
CTTCTGGAACTCGATGAGCGTCATCAGCTGTTCGGATTCGTTGTAGGCCT
TCATGTTGATGCAGGGCACCAGATGCTTGTCCACGCACACCTTGAGCACC
TTGTAGGGCGTCAGGTTCATGTTGTTGGTGGGTATTTCGGGTATGACGCA
CAGCCGCTGCGCACTATCTGCCGCATTCGCCGCCGCCGCAGCATGAGCAA
GTGCCGCATGGCGCTGCAGATGCATGGAGGCGCTATTCGAGGAGGCATTG
CCATTGCCGTTTGAGCCATTACCCGAGGAGCCGGTGTTGCTTGTCCCATT
GTTGTTACCCGATGCATTCGCCGAGTTGCCTGCATTACCCGAATTCGAGG
AACTGCGTCCATTCTGCTGGGCATGATGGGCGGCGACGGCGGCCAAACGT
TGTTGCTGGGCCACCGCTGCCGCCGCTACCTGTTGCTGGGCGACCGCCGA
CGAGTGTTGCTGCAAATAGGCCGCCGATGCAGCTAGTGACATGTGGTTGG
CATTTTGACCTGCCGCCGAGCGGACGAGCGGAGGTGGGGCATTCCCGCCG
CCACCACTATGGTTGTTCACCGAGGACATGGAGATCGCGGGGTTGTTGTA
GGAATACGGCTGCCGGCTGCTGCCGCTCATCATCAGGTTTGTCATGTGCT
CCCGATAGCTTCCCACGCGATTGCCGTTCGCAT
BS10862.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33691-PB | 2532 | CG33691-RB | 1616..2532 | 933..17 | 4510 | 99.6 | Minus |
| CG33691-PA | 2277 | CG33691-RA | 1554..2277 | 740..17 | 3620 | 100 | Minus |
| CG33691-PC | 2109 | CG33691-RC | 1386..2109 | 740..17 | 3620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43736-RF | 5815 | CG43736-RF | 2018..2934 | 933..17 | 4540 | 99.7 | Minus |
| CG43736-RB | 4330 | CG43736-RB | 2018..2934 | 933..17 | 4540 | 99.7 | Minus |
| CG43736-RL | 7668 | CG43736-RL | 4064..4787 | 740..17 | 3620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6877914..6878484 | 740..170 | 2855 | 100 | Minus |
| X | 23542271 | X | 6872729..6872923 | 933..739 | 930 | 98.5 | Minus |
| X | 23542271 | X | 6878545..6878699 | 171..17 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 11:12:15 has no hits.
BS10862.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:02 Download gff for
BS10862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32737-PD | 1616..2532 | 17..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:25 Download gff for
BS10862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33691-PB | 1616..2532 | 17..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:35:22 Download gff for
BS10862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43736-RB | 2018..2939 | 11..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:10:23 Download gff for
BS10862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43736-RB | 2018..2939 | 11..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:10:23 Download gff for
BS10862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6872729..6872921 | 741..933 | 98 | -> | Minus |
| X | 6877914..6878483 | 171..740 | 100 | -> | Minus |
| X | 6878546..6878704 | 11..170 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:35:22 Download gff for
BS10862.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6766762..6766954 | 741..933 | 98 | -> | Minus |
| arm_X | 6771947..6772516 | 171..740 | 100 | -> | Minus |
| arm_X | 6772579..6772737 | 11..170 | 98 | | Minus |
BS10862.5prime Sequence
839 bp (715 high quality bases) assembled on 2006-04-19
> BS10862.5prime
GAAGTTATCAGTCGACATGGCCAGCGAGGATGTGCAGATCACTAGCGTCA
TCGATGCCAATGGCCAGAGCCTACCGCTCCACGGCAACAGTTTGGGCGGT
CCCCTGGGACCGCCCGTCAAGCAGGAGCGTCCCGATGACGCCGAGATCCG
CGAACTAGCTGCCAAAATGAAGGAGCAGCAGAAGCAACAGGCCGCCCAGC
AGGCATCCCGTCAAGCGGCCATGCAGCACTCGAATGGGGGCGCCATTGCG
GCATCCTCGGCCGGTGGCAACATGCAGCCGCCGATCACAAATGGCAATGG
CCAGACCAATATCATGAACTACCTATCTCGTCATCAGAAACTACCCAACG
GCACCATGCAGGTGGTGCCCGCCTTGGCCTCCAATGGCCGCTCGAATGGA
GCCGTCAGCGACTCCGGCTCGGACAAGAAGTCCTCCACGGGACCCTGCGA
CGAGGAGTCCATTCAAGGCCACTTCGGCTGGGCTCAGTTCGGCAAGGTAT
CCATACCGTACATCTATCGCCAATCGGAGAAGTACTGCTCCGTGCGCATG
ATCGAACTGAAACTGCTGGGCAAATACCTTAACTGCCTGCATCCGGATAT
CTACTCCAGCTGCACCTGCGTGCGCAGCTACTACATCACCGATGCGGAGG
CCCGTCTCTTCATCGAGATTAATCATAAGCATTGTGACGGCGAGTTCGGT
CGCGACATCTTCAACCAAAAGGATTTGGTGGTGCGTCTCAGTGACGCATC
CAAGTTCTATCAGTTCCTGGATATTTGCTATAGGAAACTAGTTCTCCGGC
AGCAAGACGCCGTCGGAGAAGTGCGGCTTTATTCGCATC
BS10862.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33691-PB | 2532 | CG33691-RB | 1..776 | 17..792 | 3880 | 100 | Plus |
| CG33691-PB | 2532 | CG33691-RB | 776..822 | 793..839 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43736-RL | 7668 | CG43736-RL | 684..1505 | 17..839 | 4090 | 99.9 | Plus |
| CG43736-RK | 2425 | CG43736-RK | 359..1180 | 17..839 | 4090 | 99.9 | Plus |
| CG43736-RJ | 2393 | CG43736-RJ | 327..1148 | 17..839 | 4090 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6869390..6870211 | 17..839 | 4065 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:52:13 has no hits.
BS10862.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:03 Download gff for
BS10862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32737-PD | 1..822 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:26 Download gff for
BS10862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33691-PB | 1..822 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:58:24 Download gff for
BS10862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43736-RB | 399..1224 | 10..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:54 Download gff for
BS10862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43736-RJ | 323..1148 | 10..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:54 Download gff for
BS10862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6869386..6870211 | 10..839 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:58:24 Download gff for
BS10862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6763419..6764244 | 10..839 | 99 | | Plus |
BS10862.complete Sequence
2564 bp assembled on 2009-12-07
GenBank Submission: KX805515
> BS10862.complete
GAAGTTATCAGTCGACATGGCCAGCGAGGATGTGCAGATCACTAGCGTCA
TCGATGCCAATGGCCAGAGCCTACCGCTCCACGGCAACAGTTTGGGCGGT
CCCCTGGGACCGCCCGTCAAGCAGGAGCGTCCCGATGACGCCGAGATCCG
CGAACTAGCTGCCAAAATGAAGGAGCAGCAGAAGCAACAGGCCGCCCAGC
AGGCATCCCGTCAAGCGGCCATGCAGCACTCGAATGGGGGCGCCATTGCG
GCATCCTCGGCCGGTGGCAACATGCAGCCGCCGATCACAAATGGCAATGG
CCAGACCAATATCATGAACTACCTATCTCGTCATCAGAAACTACCCAACG
GCACCATGCAGGTGGTGCCCGCCTTGGCCTCCAATGGCCGCTCGAATGGA
GCCGTCAGCGACTCCGGCTCGGACAAGAAGTCCTCCACGGGACCCTGCGA
CGAGGAGTCCATTCAAGGCCACTTCGGCTGGGCTCAGTTCGGCAAGGTAT
CCATACCGTACATCTATCGCCAATCGGAGAAGTACTGCTCCGTGCGCATG
ATCGAACTGAAACTGCTGGGCAAATACCTTAACTGCCTGCATCCGGATAT
CTACTCCAGCTGCACCTGCGTGCGCAGCTACTACATCACCGATGCGGAGG
CCCGTCTCTTCATCGAGATTAATCATAAGCATTGTGACGGCGAGTTCGGT
CGCGACATCTTCAACCAAAAGGATTTGGTGGTGCGTCTCAGTGACGCATC
CAAGTTCTATCAGTTCCTGGATATTTGCTATAGGAAACTAGTCTCCGGCA
GCAAGACGCCGTCGGAGAAGTGCGGCTTTATTCGCATCAACAAGGAGTCC
GTGGTGCCCTACACTGTGCGCAACAATCAGCAGGTTGTGCCGCTCTTTTA
TTTTGAGGGCGAGACCGAGAATCTAAAGACCAAAGCGGAGCTGCTCAATG
GCTGGGACCTGGCTTATCTAAAGTTCTGCTGCAAGGTGCAGGGCATACGC
AATGAGCTCTTCTCCAGCGAGAACGTGGCCGTGATTTCGCTGACGGACAT
CAAAAGCTACTTCCCAAATGGCACCGAATTCGAGGACTACTGGCCCAGCA
AGGTGGTTGACTCCAATCTGCTCATTGGCAATCGGGCCAATGTCAACAAC
TCGGTCAATTGGACCCGTCAACCCTCGGCGCCGCCTCCAAAAGTGACCAC
CTCCGTTTCCGGATCGTCCGGCCCTTCCTCCTCCAGCGGCGGCAACATGG
GCCAGAACACATCAGCCGCATCATCCTCCGCGAACACCGCTGGTGGCCAA
CAGGTGACCTCAAAATCTCAGCAACAGCACGCTGCCTCTGCCGCCGCAGC
AGCGGCGACGGCGCATCAACAGCATCTGATGAAGCAACGCGCCGCCGCAG
CAGCAGCTGCCGCCGGCGCCAATGGTGTGGCGAATGCGGCAAATAGTTTT
GGGGCAGCCGCGGTAGCGGCCTTCAATTCCCAGGCGGCGGCAGCGGCGTC
GATGCTCCAGCAGTCGCAGGGCAACAACAGGATGTTATCGCAGGCCACCG
TCCAGGCTTTGGCCAGCAGCGGATGGATGTCCGGACAGACAAACCTGCAG
CTCCACGCCCAGATGATGGCGCAGCAAACGCATGCGAACGCCAATCGCGT
GGGAAGCTATCGGGAGCACATGAACAACCTGATGATGAGCGGCAGCAGCC
GGCAGCCGTATTCCTACAACAACCCCGCGATCTCCATGTCCTCGGTGAAC
AACCATAGTGGTGGCGGCGGGAATGCCCCACCTCCGCTCGTCCGCTCGGC
GGCAGGTCAAAATGCCAACCACATGTCACTAGCTGCATCGGCGGCCTATT
TGCAGCAACACTCGTCGGCGGTCGCCCAGCAACAGGTAGCGGCGGCAGCG
GTGGCCCAGCAACAACGTTTGGCCGCCGTCGCCGCCCATCATGCCCAGCA
GAATGGACGCAGTTCCTCGAATTCGGGTAATGCAGGCAACTCGGCGAATG
CATCGGGTAACAACAATGGGACAAGCAACACCGGCTCCTCGGGTAATGGC
TCAAACGGCAATGGCAATGCCTCCTCGAATAGCGCCTCCATGCATCTGCA
GCGCCATGCGGCACTTGCTCATGCTGCGGCGGCGGCGAATGCGGCAGATA
GTGCGCAGCGGCTGTGCGTCATACCCGAAATACCCACCAACAACATGAAC
CTGACGCCCTACAAGGTGCTCAAGGTGTGCGTGGACAAGCATCTGGTGCC
CTGCATCAACATGAAGGCCTACAACGAATCCGAACAGCTGATGACGCTCA
TCGAGTTCCAGAAGAACTTCTTCCCCTCAGTGCCGCTGGATCATTGCAAG
CGATTGATCGAGGCCCTCGGCGTGGAGCTCTACAAGGCAAATCGGCGACA
AGTGCAGATCCTGATGGAGTACGATCGCAACTACAACGAAAACATGCCAC
TGGTGCAAGTGCGCGACATCATCAAGTACATGACACAGCTGACCTTTATG
ACGCGCCAGTCGGAGCAGCCGCCAGCTAAGAGGACGCGCACGAGCTAGAA
GCTTTCTAGACCAT
BS10862.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43736-RF | 3687 | CG43736-PF | 1..2532 | 17..2548 | 12660 | 100 | Plus |
| CG43736-RB | 2532 | CG43736-PB | 1..2532 | 17..2548 | 12660 | 100 | Plus |
| CG43736-RL | 4104 | CG43736-PL | 1..1812 | 17..1828 | 9060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43736-RF | 5815 | CG43736-RF | 403..2934 | 17..2548 | 12660 | 100 | Plus |
| CG43736-RB | 4330 | CG43736-RB | 403..2934 | 17..2548 | 12660 | 100 | Plus |
| CG43736-RL | 7668 | CG43736-RL | 684..2495 | 17..1828 | 9060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6869390..6870992 | 17..1619 | 8015 | 100 | Plus |
| X | 23542271 | X | 6877914..6878484 | 1825..2395 | 2855 | 100 | Plus |
| X | 23542271 | X | 6872715..6872923 | 1618..1826 | 1045 | 100 | Plus |
| X | 23542271 | X | 6878545..6878699 | 2394..2548 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:13:58 has no hits.
BS10862.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:55 Download gff for
BS10862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33691-RB | 403..2934 | 17..2548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:18 Download gff for
BS10862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43736-RB | 403..2934 | 17..2548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:29 Download gff for
BS10862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33691-RB | 403..2934 | 17..2548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:48 Download gff for
BS10862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43736-RB | 403..2934 | 17..2548 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:48 Download gff for
BS10862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6878546..6878699 | 2395..2548 | 100 | | Plus |
| X | 6869390..6870991 | 17..1618 | 100 | -> | Plus |
| X | 6872716..6872921 | 1619..1824 | 100 | -> | Plus |
| X | 6877914..6878483 | 1825..2394 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:18 Download gff for
BS10862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6772579..6772732 | 2395..2548 | 100 | | Plus |
| arm_X | 6763423..6765024 | 17..1618 | 100 | -> | Plus |
| arm_X | 6766749..6766954 | 1619..1824 | 100 | -> | Plus |
| arm_X | 6771947..6772516 | 1825..2394 | 100 | -> | Plus |
BS10862.pep Sequence
Translation from 16 to 2547
> BS10862.pep
MASEDVQITSVIDANGQSLPLHGNSLGGPLGPPVKQERPDDAEIRELAAK
MKEQQKQQAAQQASRQAAMQHSNGGAIAASSAGGNMQPPITNGNGQTNIM
NYLSRHQKLPNGTMQVVPALASNGRSNGAVSDSGSDKKSSTGPCDEESIQ
GHFGWAQFGKVSIPYIYRQSEKYCSVRMIELKLLGKYLNCLHPDIYSSCT
CVRSYYITDAEARLFIEINHKHCDGEFGRDIFNQKDLVVRLSDASKFYQF
LDICYRKLVSGSKTPSEKCGFIRINKESVVPYTVRNNQQVVPLFYFEGET
ENLKTKAELLNGWDLAYLKFCCKVQGIRNELFSSENVAVISLTDIKSYFP
NGTEFEDYWPSKVVDSNLLIGNRANVNNSVNWTRQPSAPPPKVTTSVSGS
SGPSSSSGGNMGQNTSAASSSANTAGGQQVTSKSQQQHAASAAAAAATAH
QQHLMKQRAAAAAAAAGANGVANAANSFGAAAVAAFNSQAAAAASMLQQS
QGNNRMLSQATVQALASSGWMSGQTNLQLHAQMMAQQTHANANRVGSYRE
HMNNLMMSGSSRQPYSYNNPAISMSSVNNHSGGGGNAPPPLVRSAAGQNA
NHMSLAASAAYLQQHSSAVAQQQVAAAAVAQQQRLAAVAAHHAQQNGRSS
SNSGNAGNSANASGNNNGTSNTGSSGNGSNGNGNASSNSASMHLQRHAAL
AHAAAAANAADSAQRLCVIPEIPTNNMNLTPYKVLKVCVDKHLVPCINMK
AYNESEQLMTLIEFQKNFFPSVPLDHCKRLIEALGVELYKANRRQVQILM
EYDRNYNENMPLVQVRDIIKYMTQLTFMTRQSEQPPAKRTRTS*
BS10862.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43736-PF | 1228 | CG43736-PF | 1..843 | 1..843 | 4335 | 100 | Plus |
| CG43736-PB | 843 | CG43736-PB | 1..843 | 1..843 | 4335 | 100 | Plus |
| CG43736-PL | 1367 | CG43736-PL | 1..718 | 1..706 | 3187 | 87.6 | Plus |
| CG43736-PI | 1367 | CG43736-PI | 1..718 | 1..706 | 3187 | 87.6 | Plus |
| CG43736-PK | 620 | CG43736-PK | 1..606 | 1..606 | 3119 | 99.7 | Plus |
| CG43736-PL | 1367 | CG43736-PL | 931..1367 | 365..843 | 1261 | 60.1 | Plus |
| CG43736-PI | 1367 | CG43736-PI | 931..1367 | 365..843 | 1261 | 60.1 | Plus |
