Clone BS10866 Report

Search the DGRC for BS10866

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptNse1-RA
Protein status:BS10866.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10866.3prime Sequence

738 bp (737 high quality bases) assembled on 2006-04-19

> BS10866.3prime
ATGGTCTAGAAAGCTTTTAACCAATGGAGCGTCTTATTGGAGTTGTCCAT
AGGTTGCCGCAGGAGGGGCAAATATCGCGTCTCTGCAAGTAGGTTTGGAT
GCACCCGCGGTGGTACTGGATGTTGCAGGACCCGCAGCGAATGTCCCACA
ACACCAGGCACTTGCACAGCGTGCAGTTTTTTATGTTATCGGCGTGGTTC
GAGCTCAAATAGAAACTGAGCTCGACGAGGCTACGTGGACCTAGGTAGAT
TCTGTCGGTCACCTCCATGAAGTAGCCCATTTGGATCCACTTCTGGAGCA
GCTCCTGCATGCGGCTCTTCTTCAACGGCTTCGAGCTGGCCTGTAGGACG
ATATCATTGTAGGCGTCATTCCAGGCGATGTGGCAGTCCTCCTCGGAGGC
GATCTTGTCCAGCAGTTTCGAAAAGTACTGACACTCCTCGGCAGTGAGCC
CGGTGTTGGCCACGCTGTCCGGCGTAGCGTCCGTCTTGGCGTAAACCAGG
TACTCCTCGGCCTTGACCGGATACTTGATGAAGACCAGCAACTGGCCCAA
GTCGCTGATGGTGTCATTAATCTCCGCCACCAGTGCCCTAATCGCCTCCT
TGCTGCCGGGCTTTGTAGTCTTGTGGTTGGCACATAGCGGGGCCAGGATA
TCATCGATCAGCTCGAAGCTGAGGTAGCTGTGGTTCTTGCACGCACGCAG
GAACCCGCGTTTCACCAACTCCATGTCGACTGATAACT

BS10866.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11329-PA 708 CG11329-RA 1..708 724..17 3540 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
Nse1-RB 977 CG11329-RB 78..785 724..17 3540 100 Minus
Nse1-RA 887 CG11329-RA 78..785 724..17 3540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6676841..6677548 17..724 3540 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:17:03 has no hits.

BS10866.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:10 Download gff for BS10866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11329-PA 1..708 17..724 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:37 Download gff for BS10866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11329-PA 1..708 17..724 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:35:46 Download gff for BS10866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11329-RA 69..790 10..733 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:03:09 Download gff for BS10866.3prime
Subject Subject Range Query Range Percent Splice Strand
Nse1-RA 69..790 10..733 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:03:09 Download gff for BS10866.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6676836..6677557 10..733 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:35:46 Download gff for BS10866.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6676836..6677557 10..733 98   Plus

BS10866.5prime Sequence

738 bp (737 high quality bases) assembled on 2006-04-19

> BS10866.5prime
GAAGTTATCAGTCGACATGGAGTTGGTGAAACGCGGGTTCCTGCGTGCGT
GCAAGAACCACAGCTACCTCAGCTTCGAGCTGATCGATGATATCCTGGCC
CCGCTATGTGCCAACCACAAGACTACAAAGCCCGGCAGCAAGGAGGCGAT
TAGGGCACTGGTGGCGGAGATTAATGACACCATCAGCGACTTGGGCCAGT
TGCTGGTCTTCATCAAGTATCCGGTCAAGGCCGAGGAGTACCTGGTTTAC
GCCAAGACGGACGCTACGCCGGACAGCGTGGCCAACACCGGGCTCACTGC
CGAGGAGTGTCAGTACTTTTCGAAACTGCTGGACAAGATCGCCTCCGAGG
AGGACTGCCACATCGCCTGGAATGACGCCTACAATGATATCGTCCTACAG
GCCAGCTCGAAGCCGTTGAAGAAGAGCCGCATGCAGGAGCTGCTCCAGAA
GTGGATCCAAATGGGCTACTTCATGGAGGTGACCGACAGAATCTACCTAG
GTCCACGTAGCCTCGTCGAGCTCAGTTTCTATTTGAGCTCGAACCACGCC
GATAACATAAAAAACTGCACGCTGTGCAAGTGCCTGGTGTTGTGGGACAT
TCGCTGCGGGTCCTGCAACATCCAGTACCACCGCGGGTGCATCCAAACCT
ACTTGCAGAGACGCGATATTTGCCCCTCCTGCGGCAACCTATGGACAACT
CCAATAAGACGCTCCATTGGTTAAAAGCTTTCTAGACC

BS10866.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11329-PA 708 CG11329-RA 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Nse1-RB 977 CG11329-RB 78..785 17..724 3540 100 Plus
Nse1-RA 887 CG11329-RA 78..785 17..724 3540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6676841..6677548 724..17 3540 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:05:53 has no hits.

BS10866.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:11 Download gff for BS10866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11329-PA 1..708 17..724 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:39 Download gff for BS10866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11329-PA 1..708 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:19:12 Download gff for BS10866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11329-RA 69..790 8..731 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:10 Download gff for BS10866.5prime
Subject Subject Range Query Range Percent Splice Strand
Nse1-RA 69..790 8..731 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:10 Download gff for BS10866.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6676836..6677557 8..731 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:19:12 Download gff for BS10866.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6676836..6677557 8..731 98   Minus

BS10866.complete Sequence

740 bp assembled on 2006-11-01

GenBank Submission: FJ636741

> BS10866.complete
GAAGTTATCAGTCGACATGGAGTTGGTGAAACGCGGGTTCCTGCGTGCGT
GCAAGAACCACAGCTACCTCAGCTTCGAGCTGATCGATGATATCCTGGCC
CCGCTATGTGCCAACCACAAGACTACAAAGCCCGGCAGCAAGGAGGCGAT
TAGGGCACTGGTGGCGGAGATTAATGACACCATCAGCGACTTGGGCCAGT
TGCTGGTCTTCATCAAGTATCCGGTCAAGGCCGAGGAGTACCTGGTTTAC
GCCAAGACGGACGCTACGCCGGACAGCGTGGCCAACACCGGGCTCACTGC
CGAGGAGTGTCAGTACTTTTCGAAACTGCTGGACAAGATCGCCTCCGAGG
AGGACTGCCACATCGCCTGGAATGACGCCTACAATGATATCGTCCTACAG
GCCAGCTCGAAGCCGTTGAAGAAGAGCCGCATGCAGGAGCTGCTCCAGAA
GTGGATCCAAATGGGCTACTTCATGGAGGTGACCGACAGAATCTACCTAG
GTCCACGTAGCCTCGTCGAGCTCAGTTTCTATTTGAGCTCGAACCACGCC
GATAACATAAAAAACTGCACGCTGTGCAAGTGCCTGGTGTTGTGGGACAT
TCGCTGCGGGTCCTGCAACATCCAGTACCACCGCGGGTGCATCCAAACCT
ACTTGCAGAGACGCGATATTTGCCCCTCCTGCGGCAACCTATGGACAACT
CCAATAAGACGCTCCATTGGTTAAAAGCTTTCTAGACCAT

BS10866.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
Nse1-RB 708 CG11329-PB 1..708 17..724 3540 100 Plus
Nse1-RA 708 CG11329-PA 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Nse1-RB 977 CG11329-RB 78..785 17..724 3540 100 Plus
Nse1-RA 887 CG11329-RA 78..785 17..724 3540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6676841..6677548 724..17 3540 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:19:51 has no hits.

BS10866.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:56 Download gff for BS10866.complete
Subject Subject Range Query Range Percent Splice Strand
CG11329-RA 1..708 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:26 Download gff for BS10866.complete
Subject Subject Range Query Range Percent Splice Strand
CG11329-RA 50..771 8..731 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:11 Download gff for BS10866.complete
Subject Subject Range Query Range Percent Splice Strand
CG11329-RA 78..783 17..722 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:57 Download gff for BS10866.complete
Subject Subject Range Query Range Percent Splice Strand
CG11329-RA 50..771 8..731 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:22 Download gff for BS10866.complete
Subject Subject Range Query Range Percent Splice Strand
Nse1-RA 78..783 17..722 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:22 Download gff for BS10866.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6676843..6677548 17..722 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:11 Download gff for BS10866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6676843..6677548 17..722 100   Minus

BS10866.pep Sequence

Translation from 16 to 723

> BS10866.pep
MELVKRGFLRACKNHSYLSFELIDDILAPLCANHKTTKPGSKEAIRALVA
EINDTISDLGQLLVFIKYPVKAEEYLVYAKTDATPDSVANTGLTAEECQY
FSKLLDKIASEEDCHIAWNDAYNDIVLQASSKPLKKSRMQELLQKWIQMG
YFMEVTDRIYLGPRSLVELSFYLSSNHADNIKNCTLCKCLVLWDIRCGSC
NIQYHRGCIQTYLQRRDICPSCGNLWTTPIRRSIG*

BS10866.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Nse1-PB 235 CG11329-PB 1..235 1..235 1253 100 Plus
Nse1-PA 235 CG11329-PA 1..235 1..235 1253 100 Plus