Clone Sequence Records
BS10866.3prime Sequence
738 bp (737 high quality bases) assembled on 2006-04-19
> BS10866.3prime
ATGGTCTAGAAAGCTTTTAACCAATGGAGCGTCTTATTGGAGTTGTCCAT
AGGTTGCCGCAGGAGGGGCAAATATCGCGTCTCTGCAAGTAGGTTTGGAT
GCACCCGCGGTGGTACTGGATGTTGCAGGACCCGCAGCGAATGTCCCACA
ACACCAGGCACTTGCACAGCGTGCAGTTTTTTATGTTATCGGCGTGGTTC
GAGCTCAAATAGAAACTGAGCTCGACGAGGCTACGTGGACCTAGGTAGAT
TCTGTCGGTCACCTCCATGAAGTAGCCCATTTGGATCCACTTCTGGAGCA
GCTCCTGCATGCGGCTCTTCTTCAACGGCTTCGAGCTGGCCTGTAGGACG
ATATCATTGTAGGCGTCATTCCAGGCGATGTGGCAGTCCTCCTCGGAGGC
GATCTTGTCCAGCAGTTTCGAAAAGTACTGACACTCCTCGGCAGTGAGCC
CGGTGTTGGCCACGCTGTCCGGCGTAGCGTCCGTCTTGGCGTAAACCAGG
TACTCCTCGGCCTTGACCGGATACTTGATGAAGACCAGCAACTGGCCCAA
GTCGCTGATGGTGTCATTAATCTCCGCCACCAGTGCCCTAATCGCCTCCT
TGCTGCCGGGCTTTGTAGTCTTGTGGTTGGCACATAGCGGGGCCAGGATA
TCATCGATCAGCTCGAAGCTGAGGTAGCTGTGGTTCTTGCACGCACGCAG
GAACCCGCGTTTCACCAACTCCATGTCGACTGATAACT
BS10866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11329-PA | 708 | CG11329-RA | 1..708 | 724..17 | 3540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse1-RB | 977 | CG11329-RB | 78..785 | 724..17 | 3540 | 100 | Minus |
Nse1-RA | 887 | CG11329-RA | 78..785 | 724..17 | 3540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6676841..6677548 | 17..724 | 3540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:17:03 has no hits.
BS10866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:10 Download gff for
BS10866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-PA | 1..708 | 17..724 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:37 Download gff for
BS10866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-PA | 1..708 | 17..724 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:35:46 Download gff for
BS10866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-RA | 69..790 | 10..733 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:03:09 Download gff for
BS10866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nse1-RA | 69..790 | 10..733 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:03:09 Download gff for
BS10866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6676836..6677557 | 10..733 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:35:46 Download gff for
BS10866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6676836..6677557 | 10..733 | 98 | | Plus |
BS10866.5prime Sequence
738 bp (737 high quality bases) assembled on 2006-04-19
> BS10866.5prime
GAAGTTATCAGTCGACATGGAGTTGGTGAAACGCGGGTTCCTGCGTGCGT
GCAAGAACCACAGCTACCTCAGCTTCGAGCTGATCGATGATATCCTGGCC
CCGCTATGTGCCAACCACAAGACTACAAAGCCCGGCAGCAAGGAGGCGAT
TAGGGCACTGGTGGCGGAGATTAATGACACCATCAGCGACTTGGGCCAGT
TGCTGGTCTTCATCAAGTATCCGGTCAAGGCCGAGGAGTACCTGGTTTAC
GCCAAGACGGACGCTACGCCGGACAGCGTGGCCAACACCGGGCTCACTGC
CGAGGAGTGTCAGTACTTTTCGAAACTGCTGGACAAGATCGCCTCCGAGG
AGGACTGCCACATCGCCTGGAATGACGCCTACAATGATATCGTCCTACAG
GCCAGCTCGAAGCCGTTGAAGAAGAGCCGCATGCAGGAGCTGCTCCAGAA
GTGGATCCAAATGGGCTACTTCATGGAGGTGACCGACAGAATCTACCTAG
GTCCACGTAGCCTCGTCGAGCTCAGTTTCTATTTGAGCTCGAACCACGCC
GATAACATAAAAAACTGCACGCTGTGCAAGTGCCTGGTGTTGTGGGACAT
TCGCTGCGGGTCCTGCAACATCCAGTACCACCGCGGGTGCATCCAAACCT
ACTTGCAGAGACGCGATATTTGCCCCTCCTGCGGCAACCTATGGACAACT
CCAATAAGACGCTCCATTGGTTAAAAGCTTTCTAGACC
BS10866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11329-PA | 708 | CG11329-RA | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse1-RB | 977 | CG11329-RB | 78..785 | 17..724 | 3540 | 100 | Plus |
Nse1-RA | 887 | CG11329-RA | 78..785 | 17..724 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:05:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6676841..6677548 | 724..17 | 3540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:05:53 has no hits.
BS10866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:11 Download gff for
BS10866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-PA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:39 Download gff for
BS10866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-PA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:19:12 Download gff for
BS10866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-RA | 69..790 | 8..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:10 Download gff for
BS10866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nse1-RA | 69..790 | 8..731 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:10 Download gff for
BS10866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6676836..6677557 | 8..731 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:19:12 Download gff for
BS10866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6676836..6677557 | 8..731 | 98 | | Minus |
BS10866.complete Sequence
740 bp assembled on 2006-11-01
GenBank Submission: FJ636741
> BS10866.complete
GAAGTTATCAGTCGACATGGAGTTGGTGAAACGCGGGTTCCTGCGTGCGT
GCAAGAACCACAGCTACCTCAGCTTCGAGCTGATCGATGATATCCTGGCC
CCGCTATGTGCCAACCACAAGACTACAAAGCCCGGCAGCAAGGAGGCGAT
TAGGGCACTGGTGGCGGAGATTAATGACACCATCAGCGACTTGGGCCAGT
TGCTGGTCTTCATCAAGTATCCGGTCAAGGCCGAGGAGTACCTGGTTTAC
GCCAAGACGGACGCTACGCCGGACAGCGTGGCCAACACCGGGCTCACTGC
CGAGGAGTGTCAGTACTTTTCGAAACTGCTGGACAAGATCGCCTCCGAGG
AGGACTGCCACATCGCCTGGAATGACGCCTACAATGATATCGTCCTACAG
GCCAGCTCGAAGCCGTTGAAGAAGAGCCGCATGCAGGAGCTGCTCCAGAA
GTGGATCCAAATGGGCTACTTCATGGAGGTGACCGACAGAATCTACCTAG
GTCCACGTAGCCTCGTCGAGCTCAGTTTCTATTTGAGCTCGAACCACGCC
GATAACATAAAAAACTGCACGCTGTGCAAGTGCCTGGTGTTGTGGGACAT
TCGCTGCGGGTCCTGCAACATCCAGTACCACCGCGGGTGCATCCAAACCT
ACTTGCAGAGACGCGATATTTGCCCCTCCTGCGGCAACCTATGGACAACT
CCAATAAGACGCTCCATTGGTTAAAAGCTTTCTAGACCAT
BS10866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse1-RB | 708 | CG11329-PB | 1..708 | 17..724 | 3540 | 100 | Plus |
Nse1-RA | 708 | CG11329-PA | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse1-RB | 977 | CG11329-RB | 78..785 | 17..724 | 3540 | 100 | Plus |
Nse1-RA | 887 | CG11329-RA | 78..785 | 17..724 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6676841..6677548 | 724..17 | 3540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:19:51 has no hits.
BS10866.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:56 Download gff for
BS10866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-RA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:26 Download gff for
BS10866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-RA | 50..771 | 8..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:11 Download gff for
BS10866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-RA | 78..783 | 17..722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:57 Download gff for
BS10866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-RA | 50..771 | 8..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:22 Download gff for
BS10866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nse1-RA | 78..783 | 17..722 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:22 Download gff for
BS10866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6676843..6677548 | 17..722 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:11 Download gff for
BS10866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6676843..6677548 | 17..722 | 100 | | Minus |
BS10866.pep Sequence
Translation from 16 to 723
> BS10866.pep
MELVKRGFLRACKNHSYLSFELIDDILAPLCANHKTTKPGSKEAIRALVA
EINDTISDLGQLLVFIKYPVKAEEYLVYAKTDATPDSVANTGLTAEECQY
FSKLLDKIASEEDCHIAWNDAYNDIVLQASSKPLKKSRMQELLQKWIQMG
YFMEVTDRIYLGPRSLVELSFYLSSNHADNIKNCTLCKCLVLWDIRCGSC
NIQYHRGCIQTYLQRRDICPSCGNLWTTPIRRSIG*
BS10866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse1-PB | 235 | CG11329-PB | 1..235 | 1..235 | 1253 | 100 | Plus |
Nse1-PA | 235 | CG11329-PA | 1..235 | 1..235 | 1253 | 100 | Plus |