Clone Sequence Records
BS10867.3prime Sequence
903 bp (785 high quality bases) assembled on 2006-04-19
> BS10867.3prime
ATGGTCTAGAAAGCTTTCATCTCTGTCTGTCTGGAAGTGATTCGAACTGC
GCTGTCTCGTCCTGTCCATTCCCTTGGTCATCGGTGGCTTTCTCAGGATT
ATAGTCGTAAAACACCTGCGAAGTATCGCCCTGGACATTCACATCGATTG
GCGCACCCACATCATCAATCGGTGCTGAGCTGAAATCGCCTCGTGGCGGG
TCCTTCGGACTGTCCACCATGATCTGAACTGTGGGCATCGCGCACGTGTC
CATTGAGCTCTCTACCGAGCCCGTTGTGATGCGTATCTGAGGCGGCGGCT
GCTTGCTAAGCATGTCCAGGCCGACACCAAAACCATTTCCGTTGCCGCTC
ACGGACGGGCTGCTCTCATCCTCCTCCTTATACTCTTCGCTCTCGCGGTG
TACCAGTACGTGGACCAGAGTTGCGTTGTCCGGACGCAGGCTCAGCGAGT
GCGGATGCGTCTGTTGCTCTGGCGACGGCCTGGTGACGATCACCTCGGGG
GCTGACGCCTCAGAGACAAAAGCGTTCTTGTTTACTCTTAAAGCGCTTTG
TGCTGACAAACCTCTTTCTAGGGGCGGTTTCTTGCGAATGAAACTAGAGG
CGCGCTTACGTGATGGAGCCGACCCACCCCCCACCGCCTGGTGTCGGTCG
CTGTCGGAGGCGGAGGTGGCTGCTGGGCCACACCCAGTGGCTGGGGCGGT
GGCGGTGGAGGAGGCCGTGCCGGAGGTGGAGGCGGAGTTTGAGGTGGTGT
TGGTCGTGTTGTTCATTGCGGTTTTTCTATGTACTGAAGGTGAGGTTAAG
CTGTCATCGACAGCATCCTGATGACGCAAAAAGAAATTATAAAAGCTTCG
GCGACGACTTGCTCTAGGCGCTTCCACAAAATGCTACCGCGTTTGCCAGC
TCG
BS10867.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18506-PA | 942 | CG18506-RA | 78..942 | 881..17 | 4325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NaCP60E-RP | 11475 | CG34405-RP | 8466..9354 | 903..17 | 4395 | 99.8 | Minus |
NaCP60E-RO | 12475 | CG34405-RO | 9466..10354 | 903..17 | 4395 | 99.8 | Minus |
NaCP60E-RN | 12573 | CG34405-RN | 9564..10452 | 903..17 | 4395 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24917648..24918144 | 513..17 | 2485 | 100 | Minus |
2R | 25286936 | 2R | 24917320..24917577 | 771..514 | 1290 | 100 | Minus |
2R | 25286936 | 2R | 24916781..24916890 | 881..772 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:14:53 has no hits.
BS10867.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:12 Download gff for
BS10867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18506-PA | 54..942 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:41 Download gff for
BS10867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18506-PA | 54..942 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:53:55 Download gff for
BS10867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RN | 9564..10455 | 12..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:25:56 Download gff for
BS10867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RN | 9564..10455 | 12..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:25:56 Download gff for
BS10867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24916771..24916890 | 772..890 | 99 | -> | Minus |
2R | 24917320..24917577 | 514..771 | 100 | -> | Minus |
2R | 24917648..24918147 | 12..513 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:53:55 Download gff for
BS10867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20804294..20804413 | 772..890 | 99 | -> | Minus |
arm_2R | 20804843..20805100 | 514..771 | 100 | -> | Minus |
arm_2R | 20805171..20805670 | 12..513 | 99 | | Minus |
BS10867.5prime Sequence
856 bp (768 high quality bases) assembled on 2006-04-19
> BS10867.5prime
GAAGTTATCAGTCGACATGCTCGTCTCAGGTGCCGACGAAGTAGTCAAGG
ATATAAAACAGCAAAACGACGAGCTGGGCAAACGCGGTAGCATTTTTGTG
GAAGCGCCTAGAGCAAGTCGTCGCCGAAGCTTTTATAATTTCTTTTTGCG
TCATCAGGATGCTGTCGATGACAGCTTAACCTCACCTTCAGTACATAGAA
AAACCGCAATGAACAACACGACCAACACCACCTCAAACTCCGCCTCCACC
TCCGGCACGGCCTCCTCCACCGCCACCGCCCCAGCCACTGGGTGTGGCCC
AGCAGCCACCTCCGCCTCCGACAGCGACCGACACCAGGCGGTGGGGGGTG
GGTCGGCTCCATCACGTAAGCGCGCCTCTAGTTTCATTCGCAAGAAACCG
CCCCTAGAAAGAGGTTTGTCAGCACAAAGCGCTTTAAGAGTAAACAAGAA
CGCTTTTGTCTCTGAGGCGTCAGCCCCCGAGGTGATCGTCACCAGGCCGT
CGCCAGAGCAACAGACGCATCCGCACTCGCTGAGCCTGCGTCCGGACAAC
GCAACTCTGGTCCACGTACTGGTACACCGCGAGAGCGAAGAGTATAAGGA
GGAGGATGAGAGCAGCCCGTCCGTGAGCGGCAACGGAAATGGTTTTGGTG
TCGGCCTGGACATGCTTAGCAAGCAGCCGCCGCCTCAGATACGCATCACA
ACGGGCTCGGTAGAGAGCTCAATGGACACGTGCGCGATGCCCACAGTTCA
GATCATGGTGGACAGTCCGAAGGACCCGCCACGAGGCGATTTCAGCTCAG
CACCGATTGATGATGTGGGTGCGCCAATCGATGTGAATGTCCAGGGCGAT
ACTTCG
BS10867.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18506-PA | 942 | CG18506-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NaCP60E-RP | 11475 | CG34405-RP | 8413..9252 | 17..856 | 4200 | 100 | Plus |
NaCP60E-RO | 12475 | CG34405-RO | 9413..10252 | 17..856 | 4200 | 100 | Plus |
NaCP60E-RN | 12573 | CG34405-RN | 9511..10350 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:11:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24917648..24918042 | 462..856 | 1975 | 100 | Plus |
2R | 25286936 | 2R | 24917320..24917577 | 204..461 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 24916771..24916890 | 84..203 | 600 | 100 | Plus |
2R | 25286936 | 2R | 24915395..24915462 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:11:19 has no hits.
BS10867.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:13 Download gff for
BS10867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18506-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:42 Download gff for
BS10867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18506-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:55:16 Download gff for
BS10867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RN | 9511..10350 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:48 Download gff for
BS10867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RN | 9511..10350 | 17..856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:48 Download gff for
BS10867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24915395..24915462 | 17..84 | 100 | -> | Plus |
2R | 24916772..24916890 | 85..203 | 100 | -> | Plus |
2R | 24917320..24917577 | 204..461 | 100 | -> | Plus |
2R | 24917648..24918042 | 462..856 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:55:16 Download gff for
BS10867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20802918..20802985 | 17..84 | 100 | -> | Plus |
arm_2R | 20804295..20804413 | 85..203 | 100 | -> | Plus |
arm_2R | 20804843..20805100 | 204..461 | 100 | -> | Plus |
arm_2R | 20805171..20805565 | 462..856 | 100 | | Plus |
BS10867.complete Sequence
974 bp assembled on 2006-11-01
> BS10867.complete
GAAGTTATCAGTCGACATGCTCGTCTCAGGTGCCGACGAAGTAGTCAAGG
ATATAAAACAGCAAAACGACGAGCTGGGCAAACGCGGTAGCATTTTTGTG
GAAGCGCCTAGAGCAAGTCGTCGCCGAAGCTTTTATAATTTCTTTTTGCG
TCATCAGGATGCTGTCGATGACAGCTTAACCTCACCTTCAGTACATAGAA
AAACCGCAATGAACAACACGACCAACACCACCTCAAACTCCGCCTCCACC
TCCGGCACGGCCTCCTCCACCGCCACCGCCCCAGCCACTGGGTGTGGCCC
AGCAGCCACCTCCGCCTCCGACAGCGACCGACACCAGGCGGTGGGGGGTG
GGTCGGCTCCATCACGTAAGCGCGCCTCTAGTTTCATTCGCAAGAAACCG
CCCCTAGAAAGAGGTTTGTCAGCACAAAGCGCTTTAAGAGTAAACAAGAA
CGCTTTTGTCTCTGAGGCGTCAGCCCCCGAGGTGATCGTCACCAGGCCGT
CGCCAGAGCAACAGACGCATCCGCACTCGCTGAGCCTGCGTCCGGACAAC
GCAACTCTGGTCCACGTACTGGTACACCGCGAGAGCGAAGAGTATAAGGA
GGAGGATGAGAGCAGCCCGTCCGTGAGCGGCAACGGAAATGGTTTTGGTG
TCGGCCTGGACATGCTTAGCAAGCAGCCGCCGCCTCAGATACGCATCACA
ACGGGCTCGGTAGAGAGCTCAATGGACACGTGCGCGATGCCCACAGTTCA
GATCATGGTGGACAGTCCGAAGGACCCGCCACGAGGCGATTTCAGCTCAG
CACCGATTGATGATGTGGGTGCGCCAATCGATGTGAATGTCCAGGGCGAT
ACTTCGCAGGTGTTTTACGACTATAATCCTGAGAAAGCCACCGATGACCA
AGGGAATGGACAGGACGAGACAGCGCAGTTCGAATCACTTCCAGACAGAC
AGAGATGAAAGCTTTCTAGACCAT
BS10867.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NaCP60E-RI | 8139 | CG34405-PI | 7198..8139 | 17..958 | 4710 | 100 | Plus |
NaCP60E-RH | 8535 | CG34405-PH | 7594..8535 | 17..958 | 4710 | 100 | Plus |
NaCP60E-RG | 8535 | CG34405-PG | 7594..8535 | 17..958 | 4710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NaCP60E-RP | 11475 | CG34405-RP | 8413..9354 | 17..958 | 4710 | 100 | Plus |
NaCP60E-RO | 12475 | CG34405-RO | 9413..10354 | 17..958 | 4710 | 100 | Plus |
NaCP60E-RN | 12573 | CG34405-RN | 9511..10452 | 17..958 | 4710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24917648..24918144 | 462..958 | 2485 | 100 | Plus |
2R | 25286936 | 2R | 24917320..24917577 | 204..461 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 24916771..24916890 | 84..203 | 600 | 100 | Plus |
2R | 25286936 | 2R | 24915395..24915462 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:07:28 has no hits.
BS10867.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:58 Download gff for
BS10867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RC | 7525..8466 | 17..958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:28 Download gff for
BS10867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RC | 7925..8869 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:38 Download gff for
BS10867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RN | 9511..10451 | 17..957 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:58 Download gff for
BS10867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RC | 7925..8869 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:07 Download gff for
BS10867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RN | 9511..10451 | 17..957 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:07 Download gff for
BS10867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24917320..24917577 | 204..461 | 100 | -> | Plus |
2R | 24916772..24916890 | 85..203 | 100 | -> | Plus |
2R | 24915395..24915462 | 17..84 | 100 | -> | Plus |
2R | 24917648..24918143 | 462..957 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:38 Download gff for
BS10867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20802918..20802985 | 17..84 | 100 | -> | Plus |
arm_2R | 20804295..20804413 | 85..203 | 100 | -> | Plus |
arm_2R | 20804843..20805100 | 204..461 | 100 | -> | Plus |
arm_2R | 20805171..20805666 | 462..957 | 100 | | Plus |
BS10867.pep Sequence
Translation from 16 to 957
> BS10867.pep
MLVSGADEVVKDIKQQNDELGKRGSIFVEAPRASRRRSFYNFFLRHQDAV
DDSLTSPSVHRKTAMNNTTNTTSNSASTSGTASSTATAPATGCGPAATSA
SDSDRHQAVGGGSAPSRKRASSFIRKKPPLERGLSAQSALRVNKNAFVSE
ASAPEVIVTRPSPEQQTHPHSLSLRPDNATLVHVLVHRESEEYKEEDESS
PSVSGNGNGFGVGLDMLSKQPPPQIRITTGSVESSMDTCAMPTVQIMVDS
PKDPPRGDFSSAPIDDVGAPIDVNVQGDTSQVFYDYNPEKATDDQGNGQD
ETAQFESLPDRQR*
BS10867.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NaCP60E-PI | 2712 | CG34405-PI | 2400..2712 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PH | 2844 | CG34405-PH | 2532..2844 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PG | 2844 | CG34405-PG | 2532..2844 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PM | 2896 | CG34405-PM | 2532..2844 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PK | 2833 | CG34405-PK | 2537..2833 | 1..313 | 1500 | 94.6 | Plus |