Clone Sequence Records
BS10868.3prime Sequence
849 bp (783 high quality bases) assembled on 2006-04-19
> BS10868.3prime
ATGGTCTAGAAAGCTTCTACTTAAAGAAGAGCTTGTGCAACTGCTTGGAC
TTCACGGGCACAAATTCTTGCATTTCATCCGGGTTGGTCCAGAAGGCCAC
ACAGTTTTGAAGCTCAGTGCAAGGCGCCTCCCGATGGATGTACTCTTTCA
GGATAAAGTCGTTCTCGATCTCGTGGTGGAAGCGGGTGTCGTGCATCCGG
ATTAGCACGTGGTCCACGCGCAGAAAGTGGCGCAAAAGGATGAAGAAGCC
AGAGGGCATCACGCGGATTCGCACGCTCATCACCGATATTCCGTGGTCGT
GCAGCTCATCCTCGAACAGAGTTAAATCGTGGTAGAAGATGATGTTCTCG
CGCTGCATCAGCTTGAACTTGTTCAGCGTCTGATTCGTGGTCTCCGATCG
CACTTTTTCGTTCATGGTGCCCTGGTAGGTGGAGGTGAATGTCCAGTCGA
AAGGCTTGAACTTCTCCTCCATTGTCTGCTCGTTACGCGTTTCCCGCCAC
TCCTGAGCACAAGCGACCTCCAGCGGCTGCTTCCCATTGTCCACCAGCGC
CAGCGCGTCCATGGGGCAGAACTCGAGAGTGGCGCCGTCCTTGTGCTGTA
ACACCAGCCGATTCTTGTGGAACACCATGTCGGGCAGGTGGGGCAGCTGC
AGGGAGTGCTGGTAGTGGCAGAGGTCGCAGCGGTCGGCCGAGTCCTTGGG
ACAGCACTTGGCGGTGCCCAGTTGGCAGCTGCTCTTCAGGATGTGCGACT
TCTCATACTTGATGGCCCAGTCGTGGAACTGGATGAACTCGCTGTCCACC
GGCAGCCGGGGCACAAAGCACTCCTCCATGGACATGTCGACTGATAACT
BS10868.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9578-PA | 819 | CG9578-RA | 1..819 | 835..17 | 4095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9578-RA | 1094 | CG9578-RA | 128..946 | 835..17 | 4095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20170422..20170758 | 822..486 | 1685 | 100 | Minus |
X | 23542271 | X | 20171130..20171378 | 265..17 | 1245 | 100 | Minus |
X | 23542271 | X | 20170845..20171065 | 486..266 | 1105 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:01:39 has no hits.
BS10868.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:14 Download gff for
BS10868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-PA | 1..819 | 17..835 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:43 Download gff for
BS10868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-PA | 1..819 | 17..835 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:08:18 Download gff for
BS10868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 118..946 | 17..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:37 Download gff for
BS10868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 118..946 | 17..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:37 Download gff for
BS10868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20170424..20170758 | 486..820 | 100 | -> | Minus |
X | 20170846..20171065 | 266..485 | 100 | -> | Minus |
X | 20171130..20171378 | 17..265 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:08:18 Download gff for
BS10868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20064457..20064791 | 486..820 | 100 | -> | Minus |
arm_X | 20064879..20065098 | 266..485 | 100 | -> | Minus |
arm_X | 20065163..20065411 | 17..265 | 100 | | Minus |
BS10868.5prime Sequence
849 bp (774 high quality bases) assembled on 2006-04-19
> BS10868.5prime
GAAGTTATCAGTCGACATGTCCATGGAGGAGTGCTTTGTGCCCCGGCTGC
CGGTGGACAGCGAGTTCATCCAGTTCCACGACTGGGCCATCAAGTATGAG
AAGTCGCACATCCTGAAGAGCAGCTGCCAACTGGGCACCGCCAAGTGCTG
TCCCAAGGACTCGGCCGACCGCTGCGACCTCTGCCACTACCAGCACTCCC
TGCAGCTGCCCCACCTGCCCGACATGGTGTTCCACAAGAATCGGCTGGTG
TTACAGCACAAGGACGGCGCCACTCTCGAGTTCTGCCCCATGGACGCGCT
GGCGCTGGTGGACAATGGGAAGCAGCCGCTGGAGGTCGCTTGTGCTCAGG
AGTGGCGGGAAACGCGTAACGAGCAGACAATGGAGGAGAAGTTCAAGCCT
TTCGACTGGACATTCACCTCCACCTACCAGGGCACCATGAACGAAAAAGT
GCGATCGGAGACCACGAATCAGACGCTGAACAAGTTCAAGCTGATGCAGC
GCGAGAACATCATCTTCTACCACGATTTAACTCTGTTCGAGGATGAGCTG
CACGACCACGGAATATCGGTGATGAGCGTGCGAATCCGCGTGATGCCCTC
TGGCTTCTTCATCCTTTTGCGCCACTTTCTGCGCGTGGACCACGTGCTAA
TCCGGATGCACGACACCCGCTTCCACCACGAGATCGAGAACGACTTTATC
CTGAAAGAGTACATCCATCGGGAGGCGCCTTGCACTGAGCTTCAAAACTG
TGTGGCCTTCTGGACCAACCCGGATGAAATGCAAGAATTTGTGCCCGTGA
AGTCCAAGCAGTTGCACAAGCTCTTCTTTAAGTAGAAGCTTTCTAGACC
BS10868.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9578-PA | 819 | CG9578-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9578-RA | 1094 | CG9578-RA | 128..946 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20170422..20170758 | 30..366 | 1685 | 100 | Plus |
X | 23542271 | X | 20171130..20171378 | 587..835 | 1245 | 100 | Plus |
X | 23542271 | X | 20170845..20171065 | 366..586 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:52:18 has no hits.
BS10868.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:15 Download gff for
BS10868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:44 Download gff for
BS10868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:58:25 Download gff for
BS10868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 118..946 | 6..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:05 Download gff for
BS10868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 118..946 | 6..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:05 Download gff for
BS10868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20170846..20171065 | 367..586 | 100 | -> | Plus |
X | 20171130..20171378 | 587..835 | 100 | | Plus |
X | 20170424..20170758 | 32..366 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:58:25 Download gff for
BS10868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20064457..20064791 | 32..366 | 100 | -> | Plus |
arm_X | 20064879..20065098 | 367..586 | 100 | -> | Plus |
arm_X | 20065163..20065411 | 587..835 | 100 | | Plus |
BS10868.complete Sequence
851 bp assembled on 2006-11-01
GenBank Submission: FJ636742
> BS10868.complete
GAAGTTATCAGTCGACATGTCCATGGAGGAGTGCTTTGTGCCCCGGCTGC
CGGTGGACAGCGAGTTCATCCAGTTCCACGACTGGGCCATCAAGTATGAG
AAGTCGCACATCCTGAAGAGCAGCTGCCAACTGGGCACCGCCAAGTGCTG
TCCCAAGGACTCGGCCGACCGCTGCGACCTCTGCCACTACCAGCACTCCC
TGCAGCTGCCCCACCTGCCCGACATGGTGTTCCACAAGAATCGGCTGGTG
TTACAGCACAAGGACGGCGCCACTCTCGAGTTCTGCCCCATGGACGCGCT
GGCGCTGGTGGACAATGGGAAGCAGCCGCTGGAGGTCGCTTGTGCTCAGG
AGTGGCGGGAAACGCGTAACGAGCAGACAATGGAGGAGAAGTTCAAGCCT
TTCGACTGGACATTCACCTCCACCTACCAGGGCACCATGAACGAAAAAGT
GCGATCGGAGACCACGAATCAGACGCTGAACAAGTTCAAGCTGATGCAGC
GCGAGAACATCATCTTCTACCACGATTTAACTCTGTTCGAGGATGAGCTG
CACGACCACGGAATATCGGTGATGAGCGTGCGAATCCGCGTGATGCCCTC
TGGCTTCTTCATCCTTTTGCGCCACTTTCTGCGCGTGGACCACGTGCTAA
TCCGGATGCACGACACCCGCTTCCACCACGAGATCGAGAACGACTTTATC
CTGAAAGAGTACATCCATCGGGAGGCGCCTTGCACTGAGCTTCAAAACTG
TGTGGCCTTCTGGACCAACCCGGATGAAATGCAAGAATTTGTGCCCGTGA
AGTCCAAGCAGTTGCACAAGCTCTTCTTTAAGTAGAAGCTTTCTAGACCA
T
BS10868.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9578-RA | 819 | CG9578-PA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9578-RA | 1094 | CG9578-RA | 128..946 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20170422..20170758 | 30..366 | 1685 | 100 | Plus |
X | 23542271 | X | 20171130..20171378 | 587..835 | 1245 | 100 | Plus |
X | 23542271 | X | 20170845..20171065 | 366..586 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:51:39 has no hits.
BS10868.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:59 Download gff for
BS10868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:30 Download gff for
BS10868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 98..926 | 6..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:57 Download gff for
BS10868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 128..946 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:01 Download gff for
BS10868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 98..926 | 6..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:21 Download gff for
BS10868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 128..946 | 17..835 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:21 Download gff for
BS10868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20171130..20171378 | 587..835 | 100 | | Plus |
X | 20170424..20170758 | 32..366 | 100 | -> | Plus |
X | 20170846..20171065 | 367..586 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:57 Download gff for
BS10868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20064457..20064791 | 32..366 | 100 | -> | Plus |
arm_X | 20064879..20065098 | 367..586 | 100 | -> | Plus |
arm_X | 20065163..20065411 | 587..835 | 100 | | Plus |
BS10868.pep Sequence
Translation from 16 to 834
> BS10868.pep
MSMEECFVPRLPVDSEFIQFHDWAIKYEKSHILKSSCQLGTAKCCPKDSA
DRCDLCHYQHSLQLPHLPDMVFHKNRLVLQHKDGATLEFCPMDALALVDN
GKQPLEVACAQEWRETRNEQTMEEKFKPFDWTFTSTYQGTMNEKVRSETT
NQTLNKFKLMQRENIIFYHDLTLFEDELHDHGISVMSVRIRVMPSGFFIL
LRHFLRVDHVLIRMHDTRFHHEIENDFILKEYIHREAPCTELQNCVAFWT
NPDEMQEFVPVKSKQLHKLFFK*
BS10868.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9578-PA | 272 | CG9578-PA | 1..272 | 1..272 | 1486 | 100 | Plus |