Clone BS10868 Report

Search the DGRC for BS10868

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG9578-RA
Protein status:BS10868.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10868.3prime Sequence

849 bp (783 high quality bases) assembled on 2006-04-19

> BS10868.3prime
ATGGTCTAGAAAGCTTCTACTTAAAGAAGAGCTTGTGCAACTGCTTGGAC
TTCACGGGCACAAATTCTTGCATTTCATCCGGGTTGGTCCAGAAGGCCAC
ACAGTTTTGAAGCTCAGTGCAAGGCGCCTCCCGATGGATGTACTCTTTCA
GGATAAAGTCGTTCTCGATCTCGTGGTGGAAGCGGGTGTCGTGCATCCGG
ATTAGCACGTGGTCCACGCGCAGAAAGTGGCGCAAAAGGATGAAGAAGCC
AGAGGGCATCACGCGGATTCGCACGCTCATCACCGATATTCCGTGGTCGT
GCAGCTCATCCTCGAACAGAGTTAAATCGTGGTAGAAGATGATGTTCTCG
CGCTGCATCAGCTTGAACTTGTTCAGCGTCTGATTCGTGGTCTCCGATCG
CACTTTTTCGTTCATGGTGCCCTGGTAGGTGGAGGTGAATGTCCAGTCGA
AAGGCTTGAACTTCTCCTCCATTGTCTGCTCGTTACGCGTTTCCCGCCAC
TCCTGAGCACAAGCGACCTCCAGCGGCTGCTTCCCATTGTCCACCAGCGC
CAGCGCGTCCATGGGGCAGAACTCGAGAGTGGCGCCGTCCTTGTGCTGTA
ACACCAGCCGATTCTTGTGGAACACCATGTCGGGCAGGTGGGGCAGCTGC
AGGGAGTGCTGGTAGTGGCAGAGGTCGCAGCGGTCGGCCGAGTCCTTGGG
ACAGCACTTGGCGGTGCCCAGTTGGCAGCTGCTCTTCAGGATGTGCGACT
TCTCATACTTGATGGCCCAGTCGTGGAACTGGATGAACTCGCTGTCCACC
GGCAGCCGGGGCACAAAGCACTCCTCCATGGACATGTCGACTGATAACT

BS10868.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9578-PA 819 CG9578-RA 1..819 835..17 4095 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9578-RA 1094 CG9578-RA 128..946 835..17 4095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20170422..20170758 822..486 1685 100 Minus
X 23542271 X 20171130..20171378 265..17 1245 100 Minus
X 23542271 X 20170845..20171065 486..266 1105 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:01:39 has no hits.

BS10868.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:14 Download gff for BS10868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-PA 1..819 17..835 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:43 Download gff for BS10868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-PA 1..819 17..835 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:08:18 Download gff for BS10868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 118..946 17..846 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:37 Download gff for BS10868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 118..946 17..846 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:37 Download gff for BS10868.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20170424..20170758 486..820 100 -> Minus
X 20170846..20171065 266..485 100 -> Minus
X 20171130..20171378 17..265 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:08:18 Download gff for BS10868.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20064457..20064791 486..820 100 -> Minus
arm_X 20064879..20065098 266..485 100 -> Minus
arm_X 20065163..20065411 17..265 100   Minus

BS10868.5prime Sequence

849 bp (774 high quality bases) assembled on 2006-04-19

> BS10868.5prime
GAAGTTATCAGTCGACATGTCCATGGAGGAGTGCTTTGTGCCCCGGCTGC
CGGTGGACAGCGAGTTCATCCAGTTCCACGACTGGGCCATCAAGTATGAG
AAGTCGCACATCCTGAAGAGCAGCTGCCAACTGGGCACCGCCAAGTGCTG
TCCCAAGGACTCGGCCGACCGCTGCGACCTCTGCCACTACCAGCACTCCC
TGCAGCTGCCCCACCTGCCCGACATGGTGTTCCACAAGAATCGGCTGGTG
TTACAGCACAAGGACGGCGCCACTCTCGAGTTCTGCCCCATGGACGCGCT
GGCGCTGGTGGACAATGGGAAGCAGCCGCTGGAGGTCGCTTGTGCTCAGG
AGTGGCGGGAAACGCGTAACGAGCAGACAATGGAGGAGAAGTTCAAGCCT
TTCGACTGGACATTCACCTCCACCTACCAGGGCACCATGAACGAAAAAGT
GCGATCGGAGACCACGAATCAGACGCTGAACAAGTTCAAGCTGATGCAGC
GCGAGAACATCATCTTCTACCACGATTTAACTCTGTTCGAGGATGAGCTG
CACGACCACGGAATATCGGTGATGAGCGTGCGAATCCGCGTGATGCCCTC
TGGCTTCTTCATCCTTTTGCGCCACTTTCTGCGCGTGGACCACGTGCTAA
TCCGGATGCACGACACCCGCTTCCACCACGAGATCGAGAACGACTTTATC
CTGAAAGAGTACATCCATCGGGAGGCGCCTTGCACTGAGCTTCAAAACTG
TGTGGCCTTCTGGACCAACCCGGATGAAATGCAAGAATTTGTGCCCGTGA
AGTCCAAGCAGTTGCACAAGCTCTTCTTTAAGTAGAAGCTTTCTAGACC

BS10868.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9578-PA 819 CG9578-RA 1..819 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9578-RA 1094 CG9578-RA 128..946 17..835 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20170422..20170758 30..366 1685 100 Plus
X 23542271 X 20171130..20171378 587..835 1245 100 Plus
X 23542271 X 20170845..20171065 366..586 1105 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:52:18 has no hits.

BS10868.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:15 Download gff for BS10868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:17:44 Download gff for BS10868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:58:25 Download gff for BS10868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 118..946 6..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:05 Download gff for BS10868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 118..946 6..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:05 Download gff for BS10868.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20170846..20171065 367..586 100 -> Plus
X 20171130..20171378 587..835 100   Plus
X 20170424..20170758 32..366 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:58:25 Download gff for BS10868.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20064457..20064791 32..366 100 -> Plus
arm_X 20064879..20065098 367..586 100 -> Plus
arm_X 20065163..20065411 587..835 100   Plus

BS10868.complete Sequence

851 bp assembled on 2006-11-01

GenBank Submission: FJ636742

> BS10868.complete
GAAGTTATCAGTCGACATGTCCATGGAGGAGTGCTTTGTGCCCCGGCTGC
CGGTGGACAGCGAGTTCATCCAGTTCCACGACTGGGCCATCAAGTATGAG
AAGTCGCACATCCTGAAGAGCAGCTGCCAACTGGGCACCGCCAAGTGCTG
TCCCAAGGACTCGGCCGACCGCTGCGACCTCTGCCACTACCAGCACTCCC
TGCAGCTGCCCCACCTGCCCGACATGGTGTTCCACAAGAATCGGCTGGTG
TTACAGCACAAGGACGGCGCCACTCTCGAGTTCTGCCCCATGGACGCGCT
GGCGCTGGTGGACAATGGGAAGCAGCCGCTGGAGGTCGCTTGTGCTCAGG
AGTGGCGGGAAACGCGTAACGAGCAGACAATGGAGGAGAAGTTCAAGCCT
TTCGACTGGACATTCACCTCCACCTACCAGGGCACCATGAACGAAAAAGT
GCGATCGGAGACCACGAATCAGACGCTGAACAAGTTCAAGCTGATGCAGC
GCGAGAACATCATCTTCTACCACGATTTAACTCTGTTCGAGGATGAGCTG
CACGACCACGGAATATCGGTGATGAGCGTGCGAATCCGCGTGATGCCCTC
TGGCTTCTTCATCCTTTTGCGCCACTTTCTGCGCGTGGACCACGTGCTAA
TCCGGATGCACGACACCCGCTTCCACCACGAGATCGAGAACGACTTTATC
CTGAAAGAGTACATCCATCGGGAGGCGCCTTGCACTGAGCTTCAAAACTG
TGTGGCCTTCTGGACCAACCCGGATGAAATGCAAGAATTTGTGCCCGTGA
AGTCCAAGCAGTTGCACAAGCTCTTCTTTAAGTAGAAGCTTTCTAGACCA
T

BS10868.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9578-RA 819 CG9578-PA 1..819 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9578-RA 1094 CG9578-RA 128..946 17..835 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20170422..20170758 30..366 1685 100 Plus
X 23542271 X 20171130..20171378 587..835 1245 100 Plus
X 23542271 X 20170845..20171065 366..586 1105 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:51:39 has no hits.

BS10868.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:59 Download gff for BS10868.complete
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:30 Download gff for BS10868.complete
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 98..926 6..835 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:57 Download gff for BS10868.complete
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 128..946 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:01 Download gff for BS10868.complete
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 98..926 6..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:21 Download gff for BS10868.complete
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 128..946 17..835 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:21 Download gff for BS10868.complete
Subject Subject Range Query Range Percent Splice Strand
X 20171130..20171378 587..835 100   Plus
X 20170424..20170758 32..366 100 -> Plus
X 20170846..20171065 367..586 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:57 Download gff for BS10868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20064457..20064791 32..366 100 -> Plus
arm_X 20064879..20065098 367..586 100 -> Plus
arm_X 20065163..20065411 587..835 100   Plus

BS10868.pep Sequence

Translation from 16 to 834

> BS10868.pep
MSMEECFVPRLPVDSEFIQFHDWAIKYEKSHILKSSCQLGTAKCCPKDSA
DRCDLCHYQHSLQLPHLPDMVFHKNRLVLQHKDGATLEFCPMDALALVDN
GKQPLEVACAQEWRETRNEQTMEEKFKPFDWTFTSTYQGTMNEKVRSETT
NQTLNKFKLMQRENIIFYHDLTLFEDELHDHGISVMSVRIRVMPSGFFIL
LRHFLRVDHVLIRMHDTRFHHEIENDFILKEYIHREAPCTELQNCVAFWT
NPDEMQEFVPVKSKQLHKLFFK*

BS10868.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9578-PA 272 CG9578-PA 1..272 1..272 1486 100 Plus