Clone Sequence Records
BS10877.complete Sequence
2387 bp assembled on 2009-12-07
GenBank Submission: KX800808
> BS10877.complete
GAAGTTATCAGTCGACATGGCAACTTTAGACGCGGAAGCCAACGAGGAGC
AGTTCGGCAATGATCAGCCCAAGTCGATGTCGGGTCCAATCATTGGGATT
ATCTATCCGCCGCCGGAAGTTAGAAATATCGTTGACAAGACCGCCAGTTT
TGTGGCTCGCAATGGACCGGAATTCGAGGCGCGCATCCGCCAAAATGAGC
TGGGCAATCCAAAGTTTAACTTCTTAAATGGCGGAGATCCCTACCACGCA
TACTACAGACACAAGGTCAACGAGTTCCGCGAGGGCAATGATGCCGGTAT
CACTGCCCTTGCCAGCATGAAGCAGCTGGCGGTGACCAGTGCCGCCCAAC
AGCGCCAGCAAGAGCTTCTCAAGCAAGTGGTGGAGCAGCAGTTCGTACCA
AAGGAACCTCCACCTGAATTCGAGTTCATAGCCGATCCGCCCTCCATTTC
GGCGCTGGATTTGGACATTGTGAAGCTAACTGCTCAATTTGTGGCCCGTA
ACGGCCGACAGTTTCTGACCAATCTTATGAGCCGGGAGCAGCGTAACTTT
CAGTTTGACTTCCTGCGACCCCAGCACTCGCTCTTCCAGTACTTTACCAA
GTTGCTGGAGCAGTATACCAAGGTCTTGATACCTCCAAAGGATTTGCTGG
GCAAACTGCGTTCCGAGAGCGCACCGGGCAGGAGCAGCATGAACCAGGTG
CTGGAGCAGGTTAAATATCGGGCCAACTGGCAGCGTCACCAAGAAGCACA
ACGCCGCCGTGAGGAGGAGAAGATCGAAAGGGAGCGCGTGGCCTATGCCC
AAATCGATTGGCATGACTTTGTGGTGGTGGAGACGGTGGACTATCAGCCA
TTCGAATCGGGCAACTTCCCGCCACCCACGAATCCCGACGAGGTAGGAGC
CCGTGTGCTAATGGAAGAGCGTCTAATGGACGAAGAGGGCGATACAGAAA
TGCAGATCGAGTCGGACGACGAGGGCGACTCCCAGGCTAACAACCTATTG
GACAGCGGTCTGAAACTCTCGCAAATGGAGAACCGTGTGGGTATACAAAT
GAAGAACGTATCGTCGTATGGCCAGCCGACTGGCCCCAAGAGAGACAACA
CCCAGGTGCAAGACATGGACGAAGCCTCTAGTGATGAGGACACTCCAACC
ACTAAGTTGCAGCCATCTGTTGCGCCAATGCTGCCGCCCACCCACGACAA
AGTGGTGGTCAAGAAATACGATCCTAAGGCAACGCAACCGAAGCAGGCGC
CAATGCCTACGGATGAGTATCTCATCTCGCCGATTACAGGAGAGAAAATA
CCGGCTTCCAAGGTCTCGGAGCACATGCGCATCGGTCTATTGGATCCACG
CTGGGTGGAACAGCGAGACAAGCATACTGTGGAGAAAATCAATCAAGACA
ATGTGTTCGCCGCGGGCACTGCCATCGAGGCGAGTCTCAAGCAACTGGCT
GAGCGTCGTACGGATATCTTTGGTGTGGGCGACGAGGAGACCGTCATTGG
TAAGAAGCTCGGCGAAGAGGAGACGAAGAAGGACGATCGCGTCACCTGGG
ACGGACACACGTCCAGCGTGGAGGCGGCCACGAGAGCAGCACGTGCAAAT
ATCACTCTGGAGGAACAAATTCATCAAATCCACAAGGTTAAGGGACTGCT
GCCCGACGAGGAGAAGGAGAAAATCGGCCCCAAACCGGTGGGCAACAAGG
CGACGCTTTCAGCTCCGCCGCAGCCGTCAACCAAGTCGCAGCACAGTCAC
TCCAGCCAGAGTCAACACCACCAAGGTGGCGGAGGTGGTCACCACGGGCA
TCATAATCCTCATCATCACCATCCACCGCATCAGCAGGCGCCACCTCACC
AGTCGCACCACCATCACCCGCCGCAGCAGCCTCAACCGGTGATGCAGCTG
ATGCAACTGCGTCCAACCATGATGCAGCCGCCTTTTGGAGCTGGTGGTGG
AGGCTACATGAACATGCAGCCTGGTGGAATCCCTCAGCAAATTGCACCTG
CTCCACCTGTTGATATAATGGAGGAGGAGCCGCCTTCTAAAAAGATTCGA
AGCGAGGACAACCTGATTCCAGAAGCAGACTTTATTGCCACCCACAAGAG
CCCTGTGACCATTCAGGTTTTGGTACCCAATTCCGACAAATCAGAGTGGA
AGCTTAATGGACAGATGATAGCCGTGACCATGGCACTTTCTGAACCCATT
GCCAATCTGAAGACGAAGCTGCAGGACGAAACTGGCATGCCACCGGCCAA
GCAGAAGATATTTTATGAGGGAATGTTCTTCAAAGACAGCAATACCATGG
CTTTTTACAATCTGGTAAACGGAACCACGGTGCATTTACAGGTCAAGGAG
CGTGGTGGACGCAAAAAGTAGAAGCTTTCTAGACCAT
BS10877.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-RA | 2355 | CG16941-PA | 1..2355 | 17..2371 | 11775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-RA | 2558 | CG16941-RA | 96..2451 | 16..2371 | 11780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17000111..17001573 | 1925..463 | 7315 | 100 | Minus |
| 3R | 32079331 | 3R | 16999649..16999822 | 2270..2097 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 17001634..17001807 | 463..290 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 16999882..17000054 | 2098..1926 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 17001864..17002028 | 290..126 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 17002151..17002260 | 125..16 | 550 | 100 | Minus |
| 3R | 32079331 | 3R | 16999491..16999594 | 2371..2268 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:11:37 has no hits.
BS10877.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:46 Download gff for
BS10877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 97..2451 | 17..2371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:17 Download gff for
BS10877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 97..2451 | 17..2371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:36 Download gff for
BS10877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 97..2451 | 17..2371 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:02 Download gff for
BS10877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 97..2451 | 17..2371 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:02 Download gff for
BS10877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17001864..17002028 | 126..290 | 100 | <- | Minus |
| 3R | 17002151..17002259 | 17..125 | 100 | | Minus |
| 3R | 16999491..16999592 | 2270..2371 | 100 | <- | Minus |
| 3R | 16999650..16999820 | 2099..2269 | 100 | <- | Minus |
| 3R | 16999882..17000054 | 1926..2098 | 100 | <- | Minus |
| 3R | 17000111..17001573 | 463..1925 | 100 | <- | Minus |
| 3R | 17001635..17001806 | 291..462 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:17 Download gff for
BS10877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12825213..12825314 | 2270..2371 | 100 | <- | Minus |
| arm_3R | 12825372..12825542 | 2099..2269 | 100 | <- | Minus |
| arm_3R | 12825604..12825776 | 1926..2098 | 100 | <- | Minus |
| arm_3R | 12825833..12827295 | 463..1925 | 100 | <- | Minus |
| arm_3R | 12827357..12827528 | 291..462 | 100 | <- | Minus |
| arm_3R | 12827586..12827750 | 126..290 | 100 | <- | Minus |
| arm_3R | 12827873..12827981 | 17..125 | 100 | | Minus |
BS10877.3prime Sequence
936 bp (807 high quality bases) assembled on 2006-04-19
> BS10877.3prime
ATGGTCTAGAAAGCTTCTACTTTTTGCGTCCACCACGCTCCTTGACCTGT
AAATGCACCGTGGTTCCGTTTACCAGATTGTAAAAAGCCATGGTATTGCT
GTCTTTGAAGAACATTCCCTCATAAAATATCTTCTGCTTGGCCGGTGGCA
TGCCAGTTTCGTCCTGCAGCTTCGTCTTCAGATTGGCAATGGGTTCAGAA
AGTGCCATGGTCACGGCTATCATCTGTCCATTAAGCTTCCACTCTGATTT
GTCGGAATTGGGTACCAAAACCTGAATGGTCACAGGGCTCTTGTGGGTGG
CAATAAAGTCTGCTTCTGGAATCAGGTTGTCCTCGCTTCGAATCTTTTTA
GAAGGCGGCTCCTCCTCCATTATATCAACAGGTGGAGCAGGTGCAATTTG
CTGAGGGATTCCACCAGGCTGCATGTTCATGTAGCCTCCACCACCAGCTC
CAAAAGGCGGCTGCATCATGGTTGGACGCAGTTGCATCAGCTGCATCACC
GGTTGAGGCTGCTGCGGCGGGTGATGGTGGTGCGACTGGTGAGGTGGCGC
CTGCTGATGCGGTGGATGGTGATGATGAGGATTATGATGCCCGTGGTGAC
CACCTCCGCCACCTTGGTGGTGTTGACTCTGGCTGGAGTGACTGTGCTGC
GACTTGGTTGACGGCTGCGGCGGAGCTGAAAGCGTCGCCTTGTTGCCCAC
CGGTTTGGGGCCGATTTTCTCCTTCTCCTCGTCGGGCAGCAGTCCCTTAA
CCTTGTGGATTTGATGAATTTGTTCCTCCAGAGTGATATTTGCACGTGCT
GCTCTCGTGGCCGCCTCCACGCTGGACGTGTGTCCGTCCCAGGTGACGCG
ATCGTCCTTCTTCGTCTCCTCTTCGCCGAGCTTCTTACCAATGACGGTCT
CCTCGTCGCCCACACCAAAGATATCCGTACGACGCT
BS10877.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-PA | 2355 | CG16941-RA | 1436..2355 | 936..17 | 4600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 19:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-RA | 2558 | CG16941-RA | 1532..2451 | 936..17 | 4600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 19:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17000111..17000584 | 463..936 | 2370 | 100 | Plus |
| 3R | 32079331 | 3R | 16999649..16999822 | 118..291 | 870 | 100 | Plus |
| 3R | 32079331 | 3R | 16999882..17000054 | 290..462 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 16999491..16999594 | 17..120 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 19:59:22 has no hits.
BS10877.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:33 Download gff for
BS10877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-PA | 1436..2355 | 17..936 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:18:10 Download gff for
BS10877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-PA | 1436..2355 | 17..936 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:34:50 Download gff for
BS10877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 1532..2453 | 13..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:47:40 Download gff for
BS10877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 1532..2453 | 13..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:47:40 Download gff for
BS10877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16999489..16999592 | 13..118 | 98 | <- | Plus |
| 3R | 16999650..16999820 | 119..289 | 100 | <- | Plus |
| 3R | 16999882..17000054 | 290..462 | 100 | <- | Plus |
| 3R | 17000111..17000584 | 463..936 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:34:50 Download gff for
BS10877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12825211..12825314 | 13..118 | 98 | <- | Plus |
| arm_3R | 12825372..12825542 | 119..289 | 100 | <- | Plus |
| arm_3R | 12825604..12825776 | 290..462 | 100 | <- | Plus |
| arm_3R | 12825833..12826306 | 463..936 | 100 | | Plus |
BS10877.5prime Sequence
960 bp (787 high quality bases) assembled on 2006-04-19
> BS10877.5prime
GAAGTTATCAGTCGACATGGCAACTTTAGACGCGGAAGCCAACGAGGAGC
AGTTCGGCAATGATCAGCCCAAGTCGATGTCGGGTCCAATCATTGGGATT
ATCTATCCGCCGCCGGAAGTTAGAAATATCGTTGACAAGACCGCCAGTTT
TGTGGCTCGCAATGGACCGGAATTCGAGGCGCGCATCCGCCAAAATGAGC
TGGGCAATCCAAAGTTTAACTTCTTAAATGGCGGAGATCCCTACCACGCA
TACTACAGACACAAGGTCAACGAGTTCCGCGAGGGCAATGATGCCGGTAT
CACTGCCCTTGCCAGCATGAAGCAGCTGGCGGTGACCAGTGCCGCCCAAC
AGCGCCAGCAAGAGCTTCTCAAGCAAGTGGTGGAGCAGCAGTTCGTACCA
AAGGAACCTCCACCTGAATTCGAGTTCATAGCCGATCCGCCCTCCATTTC
GGCGCTGGATTTGGACATTGTGAAGCTAACTGCTCAATTTGTGGCCCGTA
ACGGCCGACAGTTTCTGACCAATCTTATGAGCCGGGAGCAGCGTAACTTT
CAGTTTGACTTCCTGCGACCCCAGCACTCGCTCTTCCAGTACTTTACCAA
GTTGCTGGAGCAGTATACCAAGGTCTTGATACCTCCAAAGGATTTGCTGG
GCAAACTGCGTTCCGAGAGCGCACCGGGCAGGAGCAGCATGAACCAGGTG
CTGGAGCAGGTTAAATATCGGGCCAACTGGCAGCGTCACCAAGAAGCACA
ACGCCGCCGTGAGGAGGAGAAGATCGAAAGGGAGCGCGTGGGCTATGCCC
AAATCGATTGGCATGACTTTGTGGTGGTGGAGACGGTGGACTATCAGCCA
TTCGAATCGGGCAACTTCCCGCCACCCACGAATCCCGACGAGGTAGGAGC
CCGTGTGCTAATGGAAGAGCGTCTAATGGACGAAGAGGGCGATACAGAAA
TGCAGAACGA
BS10877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-PA | 2355 | CG16941-RA | 1..940 | 17..956 | 4675 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:09:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-RA | 2558 | CG16941-RA | 96..1040 | 16..960 | 4695 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17001076..17001573 | 960..463 | 2460 | 99.6 | Minus |
| 3R | 32079331 | 3R | 17001634..17001807 | 463..290 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 17001864..17002028 | 290..126 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 17002151..17002260 | 125..16 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:09:44 has no hits.
BS10877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:35 Download gff for
BS10877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-PA | 1..943 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:18:12 Download gff for
BS10877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-PA | 1..943 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:55:02 Download gff for
BS10877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 92..1039 | 9..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:16 Download gff for
BS10877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 92..1039 | 9..959 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:16 Download gff for
BS10877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17001635..17001806 | 291..462 | 100 | <- | Minus |
| 3R | 17001864..17002028 | 126..290 | 100 | <- | Minus |
| 3R | 17002151..17002264 | 9..125 | 97 | | Minus |
| 3R | 17001077..17001573 | 463..959 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:55:02 Download gff for
BS10877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12826799..12827295 | 463..959 | 99 | <- | Minus |
| arm_3R | 12827357..12827528 | 291..462 | 100 | <- | Minus |
| arm_3R | 12827586..12827750 | 126..290 | 100 | <- | Minus |
| arm_3R | 12827873..12827986 | 9..125 | 97 | | Minus |
BS10877.pep Sequence
Translation from 16 to 2370
> BS10877.pep
MATLDAEANEEQFGNDQPKSMSGPIIGIIYPPPEVRNIVDKTASFVARNG
PEFEARIRQNELGNPKFNFLNGGDPYHAYYRHKVNEFREGNDAGITALAS
MKQLAVTSAAQQRQQELLKQVVEQQFVPKEPPPEFEFIADPPSISALDLD
IVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQYFTKLLEQY
TKVLIPPKDLLGKLRSESAPGRSSMNQVLEQVKYRANWQRHQEAQRRREE
EKIERERVAYAQIDWHDFVVVETVDYQPFESGNFPPPTNPDEVGARVLME
ERLMDEEGDTEMQIESDDEGDSQANNLLDSGLKLSQMENRVGIQMKNVSS
YGQPTGPKRDNTQVQDMDEASSDEDTPTTKLQPSVAPMLPPTHDKVVVKK
YDPKATQPKQAPMPTDEYLISPITGEKIPASKVSEHMRIGLLDPRWVEQR
DKHTVEKINQDNVFAAGTAIEASLKQLAERRTDIFGVGDEETVIGKKLGE
EETKKDDRVTWDGHTSSVEAATRAARANITLEEQIHQIHKVKGLLPDEEK
EKIGPKPVGNKATLSAPPQPSTKSQHSHSSQSQHHQGGGGGHHGHHNPHH
HHPPHQQAPPHQSHHHHPPQQPQPVMQLMQLRPTMMQPPFGAGGGGYMNM
QPGGIPQQIAPAPPVDIMEEEPPSKKIRSEDNLIPEADFIATHKSPVTIQ
VLVPNSDKSEWKLNGQMIAVTMALSEPIANLKTKLQDETGMPPAKQKIFY
EGMFFKDSNTMAFYNLVNGTTVHLQVKERGGRKK*
BS10877.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-PA | 784 | CG16941-PA | 1..784 | 1..784 | 4136 | 100 | Plus |
