Clone Sequence Records
BS10879.complete Sequence
3026 bp assembled on 2009-12-07
GenBank Submission: KX800789
> BS10879.complete
GAAGTTATCAGTCGACATGAGATTCCAGTGGTTCTTATCGGCCAGTGCGA
GCTTGTCGCTGTTCCTTCTCCTGGACTTCGTCGTATGGATTCACGGCGAG
CGGGACTTCAATGTCAACGACTCCCAGGTCCCTGTAATTGAGCCAAAGGA
TGTGCCCGCCTACAAACAGGATCCGTATGTTACGGAATTGATGAGTTGCC
AAAATACTCCGAGTGAAATTGTGCTTTCACTTTTGTTGAAGAAGCACGAC
TGGAGTGAGCTGACGGCCACGAAACGAGCTCATGTCCAGGCCAAGTTGGC
CAAGTTCTTTGCCATACCCAAGGAATTCATTTCCCTGGATTCGGTGTCTA
AACGCGAACTGAGATCCATGCACAAGTTGGCCATGAGAAAAGGAGGCAAG
GGCAACAAGAATATCGAGACCCTGAATCGTCGCCTGGGACGCGCCAGTTT
CATGATCGGCTGTGGTCCAAGCTACTTTGTGATGGGCGAACCGATAGCCA
AGCAGATTGCCCACCAAATGAAGGATGGCACCATTGGCGCTTTGACGGAG
GAGAACTTCGGGCTGTGGTTCATTTGGCGAAAGGAATTGAAATCAAGATC
AAACCGCAAGCGACGTCAATCCGAGGGCTCTGGTGCCGATGAAGATGACT
ACGACTATGGGGATGACGATGAGGAAGTTGCTGAGCCCAGTACGGAAGTG
CCACCAGTGACCACACATGCCCATCGACATCATCACGGAGCGCCAAATAC
TGTGCTTAATGAGCTCGAGCTGAGCACCCAGCTGCCCATCGACGATTTTG
AAGGCACTGCTACTGCAACACAGCCAACTGGCACTGCAACTGCAACTGCC
ATTGCAAGCACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACCGC
AACAGCCACAACTGCCAATGCATCTGCAACAACAGCAGGCGAAAGCGAAT
TTCATATAGAGTCCACAACGCACCGCACGATTAGCTCTAAGGAAGGAGGA
GAACCCGATGCCATCAGCAGCGGCAACAATAGCCTGGCCAATAATGAGCT
GTCGACGCCCGCCACGCCCACATCTTCGGTGGCCACGACCACGGCATCTA
CTCCGGAGTCGAGCAGCATCAGCAGCAACTTTGTCTCCACCGACTACATG
GAACCGCAGCCGGAAGAGAATAGTCCGCCCATCATCAAGACACGCCTGCA
GAAGCTGGCTGTCACATCGGGCAAGGCCTTCACCTTCCATGTGCTACCGG
AAACGTTTTACGATGCCGAGGATCAGGGTAATCTCCGCCTGGCGCTCACC
GACAAGGATGGCCACGAGCTAAAGGCGAACTCTTGGCTGCAGTTTAACGC
CGACAAGAGGGAGCTTTATGGCCTACCTCTGGACGACACGGTATCCCGCT
GGCAATATCGCCTGTCGGCCACGGATTCGGGCAACGCCAGTGTCACGGAA
ACCGTGGAGATAAGTGTGCAGCAGCATCGAGCGGTTAGGACCATTAACCA
CGAGATCAGTGTTTTTGTACGGATCAACGAGAAGCCGGGTCACAACATTG
ATTGGCAGTTGAAGCTCATTAATGCGGTGGCCAGAACCTTGGATGACTCC
ACCAATTCGGCAGTGGTGGTGCGTGAGATCCGACAGACACCACACGATCC
ACACAGTGCCACCTTCGTGTATTTTAATGAAACGCTGCCCACCAGCGAGT
GTCCCGAAAAGGAACTAAAGGATATTATTGCACGACTGGATGCCAATAGA
CTGAGTGATTTGGTTCAGCCACAGCTGGGAATCAAATCTATAACAGGACA
GTTAATCGGATCCTGTCAGAAGGATTTAACTCAGGTGAAGCCCACGCAAC
ACATGACCAAGAATGTGCCTCCAATGCCACGCAACCAGGTGGATCGCGTT
AACGCTAGCTTGGGCCAGCTGCTGGTCTACAAAGTGCCGGCGGATACCTT
CTATGATGCGAACGACAATCAATTGACTCTTACGTTGAAAACCAGGGATC
ACCTTGAGCTTAGCCCACGCCACTGGCTGCAGTTCGACTCCAAGAACGAA
GAGTTCTATGGCATTCCGAAAAGCGGTGACATTGGTTCCGAGGAATATCT
GTTGGTCGCCGAAGACAGTGGTGGCCTGAGTGCCCATGATGCCCTGGTTG
TAGTGGTTAGCCCAGCGCCAAAGCGTGACTTTGGGTTCTTCTTCAAAGCG
TATCTGTCTATCAAACACGAGCGATTCAATGCCGATCTGCAGCGGAAGTT
TGTAGAGCGTGTAGCGAAGCTGAATGGAGATCCTACTACTGGCCAGATCC
AGATCCGTTCGATAACCACGCACCACGACTCCGATGGCACCATAGTGAAC
TTCTACAATACGACGCTGTACAGGAAGCACAACAGTTGTCGGGAGAAGGA
AGTGGCCATGACTAGGAGTGTCTACCTAAACAGTGACCTCAGCCTGAGGG
AGGCAGCCAAACGGGCTCTGGGACCCGAGCTCAATTTGACCAACTTTTCG
GTGGTGCCCTTCAGTATTTGTCATCATACTGAGAACATAGACACCAACCA
ACTTGATTATATACCTAGTCGCCCCGAAGAGCCTACACATAAGTCCTCTT
TCGGCGAGGATTACATGATCACGTTCGTATGGCCCATCGTGATCATTGTG
GCGATGCTTGTGGCTGCCTCAATCATTGCCTGTTGCCTGCACTGGTGTCG
CCAAAGGAGCGGCAAAATGGAGCTAGGCGACGAAGAGGAGCGCAAGTCCT
TCCGTGCCAAGGGTATTCCCGTCATCTTTCAGGACGAGTACGAGGAGAAG
CCCGAGATCGGCAACAAGAGTCCTGTCATACTCAAGGACGAGAAGCCGCC
GCTGCTGCCACCATCCTACAATACCTCAAACATGAATGGTGACAACGACG
TGGACGATTATGTGCCACCACCATCGGTGGTTGTGGGCGGCCGGGAAGTG
CGTGGCAAGTCGCCAGCCACGCCCTCCTACCGCAAACCACCGCCATATGT
GTCGCCATAAAAGCTTTCTAGACCAT
BS10879.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dg-RA | 2994 | CG18250-PA | 1..2994 | 17..3010 | 14970 | 100 | Plus |
| Dg-RD | 3789 | CG18250-PD | 1521..3789 | 742..3010 | 11345 | 100 | Plus |
| Dg-RC | 3540 | CG18250-PC | 1519..3540 | 989..3010 | 10110 | 100 | Plus |
| Dg-RD | 3789 | CG18250-PD | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dg-RA | 5247 | CG18250-RA | 647..3643 | 15..3011 | 14985 | 100 | Plus |
| Dg-RD | 6533 | CG18250-RD | 2169..4438 | 742..3011 | 11350 | 100 | Plus |
| Dg-RC | 5793 | CG18250-RC | 2167..4189 | 989..3011 | 10115 | 100 | Plus |
| Dg-RD | 6533 | CG18250-RD | 647..1374 | 15..742 | 3640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16083946..16085096 | 2525..1375 | 5755 | 100 | Minus |
| 2R | 25286936 | 2R | 16085164..16085491 | 1374..1047 | 1640 | 100 | Minus |
| 2R | 25286936 | 2R | 16086044..16086294 | 992..742 | 1255 | 100 | Minus |
| 2R | 25286936 | 2R | 16083682..16083883 | 2727..2526 | 1010 | 100 | Minus |
| 2R | 25286936 | 2R | 16089091..16089288 | 323..126 | 990 | 100 | Minus |
| 2R | 25286936 | 2R | 16083447..16083615 | 2891..2723 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 16088683..16088826 | 597..454 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 16088907..16089040 | 454..321 | 670 | 100 | Minus |
| 2R | 25286936 | 2R | 16083271..16083394 | 3011..2888 | 620 | 100 | Minus |
| 2R | 25286936 | 2R | 16089569..16089683 | 129..15 | 575 | 100 | Minus |
| 2R | 25286936 | 2R | 16088452..16088537 | 681..596 | 430 | 100 | Minus |
| 2R | 25286936 | 2R | 16088305..16088365 | 742..682 | 305 | 100 | Minus |
| 2R | 25286936 | 2R | 16085564..16085622 | 1048..990 | 295 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 3414..3449 | 65..30 | 126 | 83.3 | Minus |
BS10879.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:17 Download gff for
BS10879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dg-RA | 622..3613 | 17..3008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:14 Download gff for
BS10879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dg-RA | 649..3640 | 17..3008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:44 Download gff for
BS10879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dg-RA | 622..3613 | 17..3008 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:28 Download gff for
BS10879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dg-RA | 649..3640 | 17..3008 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:28 Download gff for
BS10879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16083274..16083393 | 2889..3008 | 100 | <- | Minus |
| 2R | 16083450..16083611 | 2727..2888 | 100 | <- | Minus |
| 2R | 16083683..16083883 | 2526..2726 | 100 | <- | Minus |
| 2R | 16083946..16085096 | 1375..2525 | 100 | <- | Minus |
| 2R | 16085164..16085489 | 1049..1374 | 100 | <- | Minus |
| 2R | 16085564..16085620 | 992..1048 | 100 | <- | Minus |
| 2R | 16086045..16086293 | 743..991 | 100 | <- | Minus |
| 2R | 16088305..16088365 | 682..742 | 100 | <- | Minus |
| 2R | 16088452..16088535 | 598..681 | 100 | <- | Minus |
| 2R | 16088683..16088825 | 455..597 | 100 | <- | Minus |
| 2R | 16088907..16089038 | 323..454 | 100 | <- | Minus |
| 2R | 16089092..16089286 | 128..322 | 100 | <- | Minus |
| 2R | 16089571..16089681 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:14 Download gff for
BS10879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11970955..11971116 | 2727..2888 | 100 | <- | Minus |
| arm_2R | 11971188..11971388 | 2526..2726 | 100 | <- | Minus |
| arm_2R | 11970779..11970898 | 2889..3008 | 100 | <- | Minus |
| arm_2R | 11971451..11972601 | 1375..2525 | 100 | <- | Minus |
| arm_2R | 11972669..11972994 | 1049..1374 | 100 | <- | Minus |
| arm_2R | 11973069..11973125 | 992..1048 | 100 | <- | Minus |
| arm_2R | 11973550..11973798 | 743..991 | 100 | <- | Minus |
| arm_2R | 11975810..11975870 | 682..742 | 100 | <- | Minus |
| arm_2R | 11975957..11976040 | 598..681 | 100 | <- | Minus |
| arm_2R | 11976188..11976330 | 455..597 | 100 | <- | Minus |
| arm_2R | 11976412..11976543 | 323..454 | 100 | <- | Minus |
| arm_2R | 11976597..11976791 | 128..322 | 100 | <- | Minus |
| arm_2R | 11977076..11977186 | 17..127 | 100 | | Minus |
BS10879.3prime Sequence
834 bp (833 high quality bases) assembled on 2006-04-19
> BS10879.3prime
ATGGTCTAGAAAGCTTTTATGGCGACACATATGGCGGTGGTTTGCGGTAG
GAGGGCGTGGCTGGCGACTTGCCACGCACTTCCCGGCCGCCCACAACCAC
CGATGGTGGTGGCACATAATCGTCCACGTCGTTGTCACCATTCATGTTTG
AGGTATTGTAGGATGGTGGCAGCAGCGGCGGCTTCTCGTCCTTGAGTATG
ACAGGACTCTTGTTGCCGATCTCGGGCTTCTCCTCGTACTCGTCCTGAAA
GATGACGGGAATACCCTTGGCACGGAAGGACTTGCGCTCCTCTTCGTCGC
CTAGCTCCATTTTGCCGCTCCTTTGGCGACACCAGTGCAGGCAACAGGCA
ATGATTGAGGCAGCCACAAGCATCGCCACAATGATCACGATGGGCCATAC
GAACGTGATCATGTAATCCTCGCCGAAAGAGGACTTATGTGTAGGCTCTT
CGGGGCGACTAGGTATATAATCAAGTTGGTTGGTGTCTATGTTCTCAGTA
TGATGACAAATACTGAAGGGCACCACCGAAAAGTTGGTCAAATTGAGCTC
GGGTCCCAGAGCCCGTTTGGCTGCCTCCCTCAGGCTGAGGTCACTGTTTA
GGTAGACACTCCTAGTCATGGCCACTTCCTTCTCCCGACAACTGTTGTGC
TTCCTGTACAGCGTCGTATTGTAGAAGTTCACTATGGTGCCATCGGAGTC
GTGGTGCGTGGTTATCGAACGGATCTGGATCTGGCCAGTAGTAGGATCTC
CATTCAGCTTCGCTACACGCTCTACAAACTTCCGCTGCAGATCGGCATTG
AATCGCTCGTGTTTGATAGACAGATACGCTTTGA
BS10879.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:58:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18250-PB | 2745 | Dg-RB | 1928..2745 | 834..17 | 4090 | 100 | Minus |
| CG18250-PC | 3540 | Dg-RC | 2723..3540 | 834..17 | 4090 | 100 | Minus |
| CG18250-PA | 2994 | Dg-RA | 2177..2994 | 834..17 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dg-RD | 6533 | CG18250-RD | 3620..4438 | 834..16 | 4095 | 100 | Minus |
| Dg-RA | 5247 | CG18250-RA | 2825..3643 | 834..16 | 4095 | 100 | Minus |
| Dg-RC | 5793 | CG18250-RC | 3371..4189 | 834..16 | 4095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16083946..16084278 | 502..834 | 1665 | 100 | Plus |
| 2R | 25286936 | 2R | 16083682..16083883 | 300..501 | 1010 | 100 | Plus |
| 2R | 25286936 | 2R | 16083447..16083615 | 136..304 | 845 | 100 | Plus |
| 2R | 25286936 | 2R | 16083271..16083394 | 16..139 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:05:56 has no hits.
BS10879.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 10:52:38 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:18:16 Download gff for
BS10879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18250-PA | 2178..2994 | 17..833 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:46:28 Download gff for
BS10879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dg-RC | 3372..4197 | 9..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:02 Download gff for
BS10879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dg-RC | 3372..4197 | 9..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:02 Download gff for
BS10879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16083263..16083393 | 9..138 | 96 | <- | Plus |
| 2R | 16083450..16083611 | 139..300 | 100 | <- | Plus |
| 2R | 16083683..16083883 | 301..501 | 100 | <- | Plus |
| 2R | 16083946..16084277 | 502..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:46:28 Download gff for
BS10879.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11970768..11970898 | 9..138 | 96 | <- | Plus |
| arm_2R | 11970955..11971116 | 139..300 | 100 | <- | Plus |
| arm_2R | 11971188..11971388 | 301..501 | 100 | <- | Plus |
| arm_2R | 11971451..11971782 | 502..833 | 100 | | Plus |
BS10879.5prime Sequence
926 bp (839 high quality bases) assembled on 2006-04-19
> BS10879.5prime
GAAGTTATCAGTCGACATGAGATTCCAGTGGTTCTTATCGGCCAGTGCGA
GCTTGTCGCTGTTCCTTCTCCTGGACTTCGTCGTATGGATTCACGGCGAG
CGGGACTTCAATGTCAACGACTCCCAGGTCCCTGTAATTGAGCCAAAGGA
TGTGCCCGCCTACAAACAGGATCCGTATGTTACGGAATTGATGAGTTGCC
AAAATACTCCGAGTGAAATTGTGCTTTCACTTTTGTTGAAGAAGCACGAC
TGGAGTGAGCTGACGGCCACGAAACGAGCTCATGTCCAGGCCAAGTTGGC
CAAGTTCTTTGCCATACCCAAGGAATTCATTTCCCTGGATTCGGTGTCTA
AACGCGAACTGAGATCCATGCACAAGTTGGCCATGAGAAAAGGAGGCAAG
GGCAACAAGAATATCGAGACCCTGAATCGTCGCCTGGGACGCGCCAGTTT
CATGATCGGCTGTGGTCCAAGCTACTTTGTGATGGGCGAACCGATAGCCA
AGCAGATTGCCCACCAAATGAAGGATGGCACCATTGGCGCTTTGACGGAG
GAGAACTTCGGGCTGTGGTTCATTTGGCGAAAGGAATTGAAATCAAGATC
AAACCGCAAGCGACGTCAATCCGAGGGCTCTGGTGCCGATGAAGATGACT
ACGACTATGGGGATGACGATGAGGAAGTTGCTGAGCCCAGTACGGAAGTG
CCACCAGTGACCACACATGCCCATCGACATCATCACGGAGCGCCAAATAC
TGTGCTTAATGAGCTCGAGCTGAGCACCCAGCTGCCCATCGACGATTTTG
AAGGCACTGCTACTGCAACACAGCCAACTGGCACTGCAACTGNCACTGCC
ATTGCAAGCACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACCGC
AACAGCCACAACTGGCAATGCATCTG
BS10879.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:58:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18250-PA | 2994 | Dg-RA | 1..910 | 17..926 | 4481 | 99.6 | Plus |
| CG18250-PB | 2745 | Dg-RB | 1..726 | 17..742 | 3630 | 100 | Plus |
| CG18250-PC | 3540 | Dg-RC | 1..726 | 17..742 | 3630 | 100 | Plus |
| CG10077-PA | 2457 | CG10077-RA | 2233..2270 | 873..910 | 140 | 94.7 | Plus |
| CG3895-PA | 4614 | ph-d-RA | 2650..2677 | 879..906 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dg-RA | 5247 | CG18250-RA | 647..1558 | 15..926 | 4519 | 99.7 | Plus |
| Dg-RD | 6533 | CG18250-RD | 647..1374 | 15..742 | 3640 | 100 | Plus |
| Dg-RC | 5793 | CG18250-RC | 647..1374 | 15..742 | 3640 | 100 | Plus |
| Dg-RD | 6533 | CG18250-RD | 2169..2353 | 742..926 | 884 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16089091..16089288 | 323..126 | 990 | 100 | Minus |
| 2R | 25286936 | 2R | 16086110..16086294 | 926..742 | 884 | 98.4 | Minus |
| 2R | 25286936 | 2R | 16088683..16088826 | 597..454 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 16088907..16089040 | 454..321 | 670 | 100 | Minus |
| 2R | 25286936 | 2R | 16089569..16089683 | 129..15 | 575 | 100 | Minus |
| 2R | 25286936 | 2R | 16088452..16088537 | 681..596 | 430 | 100 | Minus |
| 2R | 25286936 | 2R | 16088305..16088365 | 742..682 | 305 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 3414..3449 | 65..30 | 126 | 83.3 | Minus |
BS10879.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 10:52:39 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:18:18 Download gff for
BS10879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18250-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:31:23 Download gff for
BS10879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dg-RA | 647..1558 | 15..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:10 Download gff for
BS10879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dg-RA | 647..1558 | 15..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:10 Download gff for
BS10879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16089571..16089683 | 15..127 | 100 | | Minus |
| 2R | 16089092..16089286 | 128..322 | 100 | <- | Minus |
| 2R | 16088683..16088825 | 455..597 | 100 | <- | Minus |
| 2R | 16088907..16089038 | 323..454 | 100 | <- | Minus |
| 2R | 16086110..16086293 | 743..926 | 98 | <- | Minus |
| 2R | 16088305..16088365 | 682..742 | 100 | <- | Minus |
| 2R | 16088452..16088535 | 598..681 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:31:23 Download gff for
BS10879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11976412..11976543 | 323..454 | 100 | <- | Minus |
| arm_2R | 11973615..11973798 | 743..926 | 98 | <- | Minus |
| arm_2R | 11975810..11975870 | 682..742 | 100 | <- | Minus |
| arm_2R | 11975957..11976040 | 598..681 | 100 | <- | Minus |
| arm_2R | 11976188..11976330 | 455..597 | 100 | <- | Minus |
| arm_2R | 11976597..11976791 | 128..322 | 100 | <- | Minus |
| arm_2R | 11977076..11977188 | 15..127 | 100 | | Minus |
BS10879.pep Sequence
Translation from 16 to 3009
> BS10879.pep
MRFQWFLSASASLSLFLLLDFVVWIHGERDFNVNDSQVPVIEPKDVPAYK
QDPYVTELMSCQNTPSEIVLSLLLKKHDWSELTATKRAHVQAKLAKFFAI
PKEFISLDSVSKRELRSMHKLAMRKGGKGNKNIETLNRRLGRASFMIGCG
PSYFVMGEPIAKQIAHQMKDGTIGALTEENFGLWFIWRKELKSRSNRKRR
QSEGSGADEDDYDYGDDDEEVAEPSTEVPPVTTHAHRHHHGAPNTVLNEL
ELSTQLPIDDFEGTATATQPTGTATATAIASTAAAAAATAAAATATATTA
NASATTAGESEFHIESTTHRTISSKEGGEPDAISSGNNSLANNELSTPAT
PTSSVATTTASTPESSSISSNFVSTDYMEPQPEENSPPIIKTRLQKLAVT
SGKAFTFHVLPETFYDAEDQGNLRLALTDKDGHELKANSWLQFNADKREL
YGLPLDDTVSRWQYRLSATDSGNASVTETVEISVQQHRAVRTINHEISVF
VRINEKPGHNIDWQLKLINAVARTLDDSTNSAVVVREIRQTPHDPHSATF
VYFNETLPTSECPEKELKDIIARLDANRLSDLVQPQLGIKSITGQLIGSC
QKDLTQVKPTQHMTKNVPPMPRNQVDRVNASLGQLLVYKVPADTFYDAND
NQLTLTLKTRDHLELSPRHWLQFDSKNEEFYGIPKSGDIGSEEYLLVAED
SGGLSAHDALVVVVSPAPKRDFGFFFKAYLSIKHERFNADLQRKFVERVA
KLNGDPTTGQIQIRSITTHHDSDGTIVNFYNTTLYRKHNSCREKEVAMTR
SVYLNSDLSLREAAKRALGPELNLTNFSVVPFSICHHTENIDTNQLDYIP
SRPEEPTHKSSFGEDYMITFVWPIVIIVAMLVAASIIACCLHWCRQRSGK
MELGDEEERKSFRAKGIPVIFQDEYEEKPEIGNKSPVILKDEKPPLLPPS
YNTSNMNGDNDVDDYVPPPSVVVGGREVRGKSPATPSYRKPPPYVSP*
BS10879.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dg-PA | 997 | CG18250-PA | 1..997 | 1..997 | 5192 | 100 | Plus |
| Dg-PD | 1262 | CG18250-PD | 490..1262 | 225..997 | 3916 | 98.1 | Plus |
| Dg-PC | 1179 | CG18250-PC | 406..1179 | 215..997 | 3583 | 89.2 | Plus |
| Dg-PB | 914 | CG18250-PB | 231..914 | 314..997 | 3523 | 98.5 | Plus |
| Dg-PD | 1262 | CG18250-PD | 1..442 | 1..404 | 1299 | 63.7 | Plus |
| Dg-PC | 1179 | CG18250-PC | 1..442 | 1..404 | 1299 | 63.7 | Plus |
| Dg-PB | 914 | CG18250-PB | 1..292 | 1..282 | 1295 | 87 | Plus |
