Clone BS10881 Report

Search the DGRC for BS10881

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:81
Vector:pDNR-Dual
Associated Gene/Transcriptdpr8-RA
Protein status:BS10881.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10881.3prime Sequence

908 bp (869 high quality bases) assembled on 2006-04-19

> BS10881.3prime
ATGGTCTAGAAAGCTTCTATGTCCCGGGCACCGCGCTCCTCTCGACTCCT
CTGCGGCGAAGATCCTGCGACTCCTCCAACTCCTGCAGATCCTGGCAGTT
CCGGTTGCTTCGTTGTCCCATTGCCTTTTCCTCGGCGAAGGTGCTTGCTT
GTTGGACGGTCCTACAGCCGGGTGGCGTGGCCGGGACAAGGGTGGAGCAG
CTGGCCACCAGCTGGAGGAGCATCAGTGTGCTGCAGGTGAGCAGGACCAG
CGGCAGCAAGACCGGCGGCTGGGACGCCGTAGAGTTACCGTTGTTGCCCG
TATGCATTGCCGCCGGATGCTCGCCATCGACGATATGCACGCGCACCGAC
GTCGGATTGGCATTGGAGGGTGTGCATGTGTAGAGTCCCGAGTCCTGGGT
GATGGCCTTCTGCACCAGGAGCCGGCTGGTGGTCAGCACACCTTTCTCGG
TGACTAATGATATGCCGCCGCGAGGTGAATCGAAATTTATGATCTCGCGG
TTGTGGGACCAAATGACGGTTGGCGGCGGTTCCGGTGCGAATTTCACAAT
GCAAGTCAGATTGATGGTGGATCCGCGGTTGATGTGCAGCTCGGGGCCGC
CGATGATGTCGGTGACGGGTTCAACAATGTTGAGGTAGACGGAGTGTCCA
ATTGGGGGCGTGGTCGATATCTGGCACTCGTAGATGCCGGAGTCCTTGCG
CTGCGCGTAGCGTATACGCAATGTCCAATCCTCGGCGTGCGGCGAGTGCA
TTGCCTCGAATCTCTGGTCGGATGTGTATGTGTAGCGGCCGACGGTCAGC
AGGTGTATATCCCTGTGGCGCACCCAGGACACCGTGCGATTGCCCAAATT
CTTAACGCGGCAGGTCAGCTTCACCGTCTTGGCAACGAGGTCTGTGATGT
TCGTGCCA

BS10881.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32600-PA 1035 dpr8-RA 144..1035 908..17 4385 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
dpr8-RB 4837 CG32600-RB 1059..1950 908..17 4415 99.7 Minus
dpr8-RA 4958 CG32600-RA 1180..2071 908..17 4415 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14459156..14459464 325..17 1545 100 Minus
X 23542271 X 14444316..14444527 833..622 1060 100 Minus
X 23542271 X 14454059..14454234 495..320 865 99.4 Minus
X 23542271 X 14452968..14453096 622..494 645 100 Minus
X 23542271 X 14425281..14425359 908..830 350 96.2 Minus
Blast to na_te.dros performed on 2015-02-09 03:15:59 has no hits.

BS10881.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:40 Download gff for BS10881.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr8-PA 145..1035 17..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:18:19 Download gff for BS10881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32600-PA 145..1035 17..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:54:05 Download gff for BS10881.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1181..2079 6..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:26:03 Download gff for BS10881.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1181..2079 6..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:26:03 Download gff for BS10881.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14444317..14444527 622..832 100 -> Minus
X 14452969..14453096 494..621 100 -> Minus
X 14425282..14425356 833..907 96 -> Minus
X 14454061..14454229 325..493 100 -> Minus
X 14459157..14459472 6..324 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:54:05 Download gff for BS10881.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14319315..14319389 833..907 96 -> Minus
arm_X 14338350..14338560 622..832 100 -> Minus
arm_X 14347002..14347129 494..621 100 -> Minus
arm_X 14348094..14348262 325..493 100 -> Minus
arm_X 14353190..14353505 6..324 98   Minus

BS10881.5prime Sequence

886 bp (858 high quality bases) assembled on 2006-04-19

> BS10881.5prime
GAAGTTATCAGTCGACATGTCGACACATTGGATCATTTTTCTAGGCATTT
TGTGTCTGCTGGCAGGCTGCACGGACGGCGCCTCGAAGCGCTTCTTCACA
GACTTCCTGCAGGACCTGCCAACGCCCGGAACCGGAGGACCCACTTTCGA
CACGACCATTGGCACGAACATCACAGGACTCGTTGGCAAGACGGTGAAGC
TGACCTGCCGCGTTAAGAATTTGGGCAATCGCACGGTGTCCTGGGTGCGC
CACAGGGATATACACCTGCTGACCGTCGGCCGCTACACATACACATCCGA
CCAGAGATTCGAGGCAATGCACTCGCCGCACGCCGAGGATTGGACATTGC
GTATACGCTACGCGCAGCGCAAGGACTCCGGCATCTACGAGTGCCAGATA
TCGACCACGCCCCCAATTGGACACTCCGTCTACCTCAACATTGTTGAACC
CGTCACCGACATCATCGGCGGCCCCGAGCTGCACATCAACCGCGGATCCA
CCATCAATCTGACTTGCATTGTGAAATTCGCACCGGAACCGCCGCCAACC
GTCATTTGGTCCCACAACCGCGAGATCATAAATTTCGATTCACCTCGCGG
CGGCATATCATTAGTCACCGAGAAAGGTGTGCTGACCACCAGCCGGCTCC
TGGTGCAGAAGGCCATCACCCAGGACTCGGGACTCTACACATGCACACCC
TCCAATGCCAATCCGACGTCGGTGCGCGTGCATATCGTCGATGGCGAGCA
TCCGGCGGCAATGCATACGGGCAACAACGGTAACTCTACGGCGTCCCAGC
CGCCGGTCTTGCTGCCGCTGGTCCTGCTCACCTGCAGCACACTGATGCTC
CTCCAGCTGGTGGGCAGCTGCTCCACCCTTGTCCCG

BS10881.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32600-PA 1035 dpr8-RA 1..870 17..886 4325 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
dpr8-RB 4837 CG32600-RB 916..1785 17..886 4335 99.9 Plus
dpr8-RA 4958 CG32600-RA 1037..1906 17..886 4335 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14444316..14444527 235..446 1060 100 Plus
X 23542271 X 14425184..14425359 63..238 880 100 Plus
X 23542271 X 14454059..14454234 573..748 865 99.4 Plus
X 23542271 X 14459156..14459299 743..886 705 99.3 Plus
X 23542271 X 14452968..14453096 446..574 645 100 Plus
X 23542271 X 14408273..14408322 17..66 250 100 Plus
Blast to na_te.dros performed on 2015-02-10 05:47:22 has no hits.

BS10881.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:41 Download gff for BS10881.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr8-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:18:20 Download gff for BS10881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32600-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:54:16 Download gff for BS10881.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1030..1906 9..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:31:25 Download gff for BS10881.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1030..1906 9..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:31:25 Download gff for BS10881.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14408266..14408321 9..65 93 -> Plus
X 14425187..14425356 66..235 100 -> Plus
X 14444317..14444527 236..446 100 -> Plus
X 14452969..14453096 447..574 100 -> Plus
X 14454061..14454229 575..743 100 -> Plus
X 14459157..14459299 744..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:54:16 Download gff for BS10881.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14302299..14302354 9..65 93 -> Plus
arm_X 14319220..14319389 66..235 100 -> Plus
arm_X 14338350..14338560 236..446 100 -> Plus
arm_X 14347002..14347129 447..574 100 -> Plus
arm_X 14348094..14348262 575..743 100 -> Plus
arm_X 14353190..14353332 744..886 99   Plus

BS10881.complete Sequence

1067 bp assembled on 2006-11-01

GenBank Submission: FJ636744

> BS10881.complete
GAAGTTATCAGTCGACATGTCGACACATTGGATCATTTTTCTAGGCATTT
TGTGTCTGCTGGCAGGCTGCACGGACGGCGCCTCGAAGCGCTTCTTCACA
GACTTCCTGCAGGACCTGCCAACGCCCGGAACCGGAGGACCCACTTTCGA
CACGACCATTGGCACGAACATCACAGGACTCGTTGGCAAGACGGTGAAGC
TGACCTGCCGCGTTAAGAATTTGGGCAATCGCACGGTGTCCTGGGTGCGC
CACAGGGATATACACCTGCTGACCGTCGGCCGCTACACATACACATCCGA
CCAGAGATTCGAGGCAATGCACTCGCCGCACGCCGAGGATTGGACATTGC
GTATACGCTACGCGCAGCGCAAGGACTCCGGCATCTACGAGTGCCAGATA
TCGACCACGCCCCCAATTGGACACTCCGTCTACCTCAACATTGTTGAACC
CGTCACCGACATCATCGGCGGCCCCGAGCTGCACATCAACCGCGGATCCA
CCATCAATCTGACTTGCATTGTGAAATTCGCACCGGAACCGCCGCCAACC
GTCATTTGGTCCCACAACCGCGAGATCATAAATTTCGATTCACCTCGCGG
CGGCATATCATTAGTCACCGAGAAAGGTGTGCTGACCACCAGCCGGCTCC
TGGTGCAGAAGGCCATCACCCAGGACTCGGGACTCTACACATGCACACCC
TCCAATGCCAATCCGACGTCGGTGCGCGTGCATATCGTCGATGGCGAGCA
TCCGGCGGCAATGCATACGGGCAACAACGGTAACTCTACGGCGTCCCAGC
CGCCGGTCTTGCTGCCGCTGGTCCTGCTCACCTGCAGCACACTGATGCTC
CTCCAGCTGGTGGCCAGCTGCTCCACCCTTGTCCCGGCCACGCCACCCGG
CTGTAGGACCGTCCAACAAGCAAGCACCTTCGCCGAGGAAAAGGCAATGG
GACAACGAAGCAACCGGAACTGCCAGGATCTGCAGGAGTTGGAGGAGTCG
CAGGATCTTCGCCGCAGAGGAGTCGAGAGGAGCGCGGTGCCCGGGACATA
GAAGCTTTCTAGACCAT

BS10881.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
dpr8-RB 1035 CG32600-PB 1..1035 17..1051 5175 100 Plus
dpr8-RA 1035 CG32600-PA 1..1035 17..1051 5175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
dpr8-RB 4837 CG32600-RB 916..1950 17..1051 5175 100 Plus
dpr8-RA 4958 CG32600-RA 1037..2071 17..1051 5175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14459156..14459464 743..1051 1545 100 Plus
X 23542271 X 14444316..14444527 235..446 1060 100 Plus
X 23542271 X 14425184..14425359 63..238 880 100 Plus
X 23542271 X 14454059..14454234 573..748 865 99.4 Plus
X 23542271 X 14452968..14453096 446..574 645 100 Plus
X 23542271 X 14408273..14408322 17..66 250 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:09:22 has no hits.

BS10881.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:45 Download gff for BS10881.complete
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1..1035 17..1051 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:25 Download gff for BS10881.complete
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1037..2071 17..1051 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:23 Download gff for BS10881.complete
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1037..2071 17..1051 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:46 Download gff for BS10881.complete
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1030..2079 9..1062 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:05:06 Download gff for BS10881.complete
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1037..2071 17..1051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:05:06 Download gff for BS10881.complete
Subject Subject Range Query Range Percent Splice Strand
X 14454061..14454229 575..743 100 -> Plus
X 14459157..14459464 744..1051 100   Plus
X 14425187..14425356 66..235 100 -> Plus
X 14444317..14444527 236..446 100 -> Plus
X 14452969..14453096 447..574 100 -> Plus
X 14408273..14408321 17..65 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:23 Download gff for BS10881.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14353190..14353497 744..1051 100   Plus
arm_X 14338350..14338560 236..446 100 -> Plus
arm_X 14347002..14347129 447..574 100 -> Plus
arm_X 14348094..14348262 575..743 100 -> Plus
arm_X 14302306..14302354 17..65 100 -> Plus
arm_X 14319220..14319389 66..235 100 -> Plus

BS10881.pep Sequence

Translation from 16 to 1050

> BS10881.pep
MSTHWIIFLGILCLLAGCTDGASKRFFTDFLQDLPTPGTGGPTFDTTIGT
NITGLVGKTVKLTCRVKNLGNRTVSWVRHRDIHLLTVGRYTYTSDQRFEA
MHSPHAEDWTLRIRYAQRKDSGIYECQISTTPPIGHSVYLNIVEPVTDII
GGPELHINRGSTINLTCIVKFAPEPPPTVIWSHNREIINFDSPRGGISLV
TEKGVLTTSRLLVQKAITQDSGLYTCTPSNANPTSVRVHIVDGEHPAAMH
TGNNGNSTASQPPVLLPLVLLTCSTLMLLQLVASCSTLVPATPPGCRTVQ
QASTFAEEKAMGQRSNRNCQDLQELEESQDLRRRGVERSAVPGT*

BS10881.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
dpr8-PB 344 CG32600-PB 1..344 1..344 1819 100 Plus
dpr8-PA 344 CG32600-PA 1..344 1..344 1819 100 Plus
dpr6-PC 390 CG14162-PC 13..316 5..292 754 48.1 Plus
dpr6-PF 396 CG14162-PF 13..322 5..292 739 47.5 Plus
CG42596-PC 282 CG42596-PC 50..258 41..249 732 59.8 Plus