Clone Sequence Records
BS10881.3prime Sequence
908 bp (869 high quality bases) assembled on 2006-04-19
> BS10881.3prime
ATGGTCTAGAAAGCTTCTATGTCCCGGGCACCGCGCTCCTCTCGACTCCT
CTGCGGCGAAGATCCTGCGACTCCTCCAACTCCTGCAGATCCTGGCAGTT
CCGGTTGCTTCGTTGTCCCATTGCCTTTTCCTCGGCGAAGGTGCTTGCTT
GTTGGACGGTCCTACAGCCGGGTGGCGTGGCCGGGACAAGGGTGGAGCAG
CTGGCCACCAGCTGGAGGAGCATCAGTGTGCTGCAGGTGAGCAGGACCAG
CGGCAGCAAGACCGGCGGCTGGGACGCCGTAGAGTTACCGTTGTTGCCCG
TATGCATTGCCGCCGGATGCTCGCCATCGACGATATGCACGCGCACCGAC
GTCGGATTGGCATTGGAGGGTGTGCATGTGTAGAGTCCCGAGTCCTGGGT
GATGGCCTTCTGCACCAGGAGCCGGCTGGTGGTCAGCACACCTTTCTCGG
TGACTAATGATATGCCGCCGCGAGGTGAATCGAAATTTATGATCTCGCGG
TTGTGGGACCAAATGACGGTTGGCGGCGGTTCCGGTGCGAATTTCACAAT
GCAAGTCAGATTGATGGTGGATCCGCGGTTGATGTGCAGCTCGGGGCCGC
CGATGATGTCGGTGACGGGTTCAACAATGTTGAGGTAGACGGAGTGTCCA
ATTGGGGGCGTGGTCGATATCTGGCACTCGTAGATGCCGGAGTCCTTGCG
CTGCGCGTAGCGTATACGCAATGTCCAATCCTCGGCGTGCGGCGAGTGCA
TTGCCTCGAATCTCTGGTCGGATGTGTATGTGTAGCGGCCGACGGTCAGC
AGGTGTATATCCCTGTGGCGCACCCAGGACACCGTGCGATTGCCCAAATT
CTTAACGCGGCAGGTCAGCTTCACCGTCTTGGCAACGAGGTCTGTGATGT
TCGTGCCA
BS10881.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32600-PA | 1035 | dpr8-RA | 144..1035 | 908..17 | 4385 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:16:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr8-RB | 4837 | CG32600-RB | 1059..1950 | 908..17 | 4415 | 99.7 | Minus |
dpr8-RA | 4958 | CG32600-RA | 1180..2071 | 908..17 | 4415 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14459156..14459464 | 325..17 | 1545 | 100 | Minus |
X | 23542271 | X | 14444316..14444527 | 833..622 | 1060 | 100 | Minus |
X | 23542271 | X | 14454059..14454234 | 495..320 | 865 | 99.4 | Minus |
X | 23542271 | X | 14452968..14453096 | 622..494 | 645 | 100 | Minus |
X | 23542271 | X | 14425281..14425359 | 908..830 | 350 | 96.2 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:15:59 has no hits.
BS10881.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:40 Download gff for
BS10881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-PA | 145..1035 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:18:19 Download gff for
BS10881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32600-PA | 145..1035 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:54:05 Download gff for
BS10881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1181..2079 | 6..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:26:03 Download gff for
BS10881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1181..2079 | 6..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:26:03 Download gff for
BS10881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14444317..14444527 | 622..832 | 100 | -> | Minus |
X | 14452969..14453096 | 494..621 | 100 | -> | Minus |
X | 14425282..14425356 | 833..907 | 96 | -> | Minus |
X | 14454061..14454229 | 325..493 | 100 | -> | Minus |
X | 14459157..14459472 | 6..324 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:54:05 Download gff for
BS10881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14319315..14319389 | 833..907 | 96 | -> | Minus |
arm_X | 14338350..14338560 | 622..832 | 100 | -> | Minus |
arm_X | 14347002..14347129 | 494..621 | 100 | -> | Minus |
arm_X | 14348094..14348262 | 325..493 | 100 | -> | Minus |
arm_X | 14353190..14353505 | 6..324 | 98 | | Minus |
BS10881.5prime Sequence
886 bp (858 high quality bases) assembled on 2006-04-19
> BS10881.5prime
GAAGTTATCAGTCGACATGTCGACACATTGGATCATTTTTCTAGGCATTT
TGTGTCTGCTGGCAGGCTGCACGGACGGCGCCTCGAAGCGCTTCTTCACA
GACTTCCTGCAGGACCTGCCAACGCCCGGAACCGGAGGACCCACTTTCGA
CACGACCATTGGCACGAACATCACAGGACTCGTTGGCAAGACGGTGAAGC
TGACCTGCCGCGTTAAGAATTTGGGCAATCGCACGGTGTCCTGGGTGCGC
CACAGGGATATACACCTGCTGACCGTCGGCCGCTACACATACACATCCGA
CCAGAGATTCGAGGCAATGCACTCGCCGCACGCCGAGGATTGGACATTGC
GTATACGCTACGCGCAGCGCAAGGACTCCGGCATCTACGAGTGCCAGATA
TCGACCACGCCCCCAATTGGACACTCCGTCTACCTCAACATTGTTGAACC
CGTCACCGACATCATCGGCGGCCCCGAGCTGCACATCAACCGCGGATCCA
CCATCAATCTGACTTGCATTGTGAAATTCGCACCGGAACCGCCGCCAACC
GTCATTTGGTCCCACAACCGCGAGATCATAAATTTCGATTCACCTCGCGG
CGGCATATCATTAGTCACCGAGAAAGGTGTGCTGACCACCAGCCGGCTCC
TGGTGCAGAAGGCCATCACCCAGGACTCGGGACTCTACACATGCACACCC
TCCAATGCCAATCCGACGTCGGTGCGCGTGCATATCGTCGATGGCGAGCA
TCCGGCGGCAATGCATACGGGCAACAACGGTAACTCTACGGCGTCCCAGC
CGCCGGTCTTGCTGCCGCTGGTCCTGCTCACCTGCAGCACACTGATGCTC
CTCCAGCTGGTGGGCAGCTGCTCCACCCTTGTCCCG
BS10881.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32600-PA | 1035 | dpr8-RA | 1..870 | 17..886 | 4325 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr8-RB | 4837 | CG32600-RB | 916..1785 | 17..886 | 4335 | 99.9 | Plus |
dpr8-RA | 4958 | CG32600-RA | 1037..1906 | 17..886 | 4335 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14444316..14444527 | 235..446 | 1060 | 100 | Plus |
X | 23542271 | X | 14425184..14425359 | 63..238 | 880 | 100 | Plus |
X | 23542271 | X | 14454059..14454234 | 573..748 | 865 | 99.4 | Plus |
X | 23542271 | X | 14459156..14459299 | 743..886 | 705 | 99.3 | Plus |
X | 23542271 | X | 14452968..14453096 | 446..574 | 645 | 100 | Plus |
X | 23542271 | X | 14408273..14408322 | 17..66 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 05:47:22 has no hits.
BS10881.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:52:41 Download gff for
BS10881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:18:20 Download gff for
BS10881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32600-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:54:16 Download gff for
BS10881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1030..1906 | 9..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:31:25 Download gff for
BS10881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1030..1906 | 9..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:31:25 Download gff for
BS10881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14408266..14408321 | 9..65 | 93 | -> | Plus |
X | 14425187..14425356 | 66..235 | 100 | -> | Plus |
X | 14444317..14444527 | 236..446 | 100 | -> | Plus |
X | 14452969..14453096 | 447..574 | 100 | -> | Plus |
X | 14454061..14454229 | 575..743 | 100 | -> | Plus |
X | 14459157..14459299 | 744..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:54:16 Download gff for
BS10881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14302299..14302354 | 9..65 | 93 | -> | Plus |
arm_X | 14319220..14319389 | 66..235 | 100 | -> | Plus |
arm_X | 14338350..14338560 | 236..446 | 100 | -> | Plus |
arm_X | 14347002..14347129 | 447..574 | 100 | -> | Plus |
arm_X | 14348094..14348262 | 575..743 | 100 | -> | Plus |
arm_X | 14353190..14353332 | 744..886 | 99 | | Plus |
BS10881.complete Sequence
1067 bp assembled on 2006-11-01
GenBank Submission: FJ636744
> BS10881.complete
GAAGTTATCAGTCGACATGTCGACACATTGGATCATTTTTCTAGGCATTT
TGTGTCTGCTGGCAGGCTGCACGGACGGCGCCTCGAAGCGCTTCTTCACA
GACTTCCTGCAGGACCTGCCAACGCCCGGAACCGGAGGACCCACTTTCGA
CACGACCATTGGCACGAACATCACAGGACTCGTTGGCAAGACGGTGAAGC
TGACCTGCCGCGTTAAGAATTTGGGCAATCGCACGGTGTCCTGGGTGCGC
CACAGGGATATACACCTGCTGACCGTCGGCCGCTACACATACACATCCGA
CCAGAGATTCGAGGCAATGCACTCGCCGCACGCCGAGGATTGGACATTGC
GTATACGCTACGCGCAGCGCAAGGACTCCGGCATCTACGAGTGCCAGATA
TCGACCACGCCCCCAATTGGACACTCCGTCTACCTCAACATTGTTGAACC
CGTCACCGACATCATCGGCGGCCCCGAGCTGCACATCAACCGCGGATCCA
CCATCAATCTGACTTGCATTGTGAAATTCGCACCGGAACCGCCGCCAACC
GTCATTTGGTCCCACAACCGCGAGATCATAAATTTCGATTCACCTCGCGG
CGGCATATCATTAGTCACCGAGAAAGGTGTGCTGACCACCAGCCGGCTCC
TGGTGCAGAAGGCCATCACCCAGGACTCGGGACTCTACACATGCACACCC
TCCAATGCCAATCCGACGTCGGTGCGCGTGCATATCGTCGATGGCGAGCA
TCCGGCGGCAATGCATACGGGCAACAACGGTAACTCTACGGCGTCCCAGC
CGCCGGTCTTGCTGCCGCTGGTCCTGCTCACCTGCAGCACACTGATGCTC
CTCCAGCTGGTGGCCAGCTGCTCCACCCTTGTCCCGGCCACGCCACCCGG
CTGTAGGACCGTCCAACAAGCAAGCACCTTCGCCGAGGAAAAGGCAATGG
GACAACGAAGCAACCGGAACTGCCAGGATCTGCAGGAGTTGGAGGAGTCG
CAGGATCTTCGCCGCAGAGGAGTCGAGAGGAGCGCGGTGCCCGGGACATA
GAAGCTTTCTAGACCAT
BS10881.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr8-RB | 1035 | CG32600-PB | 1..1035 | 17..1051 | 5175 | 100 | Plus |
dpr8-RA | 1035 | CG32600-PA | 1..1035 | 17..1051 | 5175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr8-RB | 4837 | CG32600-RB | 916..1950 | 17..1051 | 5175 | 100 | Plus |
dpr8-RA | 4958 | CG32600-RA | 1037..2071 | 17..1051 | 5175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14459156..14459464 | 743..1051 | 1545 | 100 | Plus |
X | 23542271 | X | 14444316..14444527 | 235..446 | 1060 | 100 | Plus |
X | 23542271 | X | 14425184..14425359 | 63..238 | 880 | 100 | Plus |
X | 23542271 | X | 14454059..14454234 | 573..748 | 865 | 99.4 | Plus |
X | 23542271 | X | 14452968..14453096 | 446..574 | 645 | 100 | Plus |
X | 23542271 | X | 14408273..14408322 | 17..66 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:09:22 has no hits.
BS10881.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:45 Download gff for
BS10881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1..1035 | 17..1051 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:25 Download gff for
BS10881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1037..2071 | 17..1051 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:23 Download gff for
BS10881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1037..2071 | 17..1051 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:46 Download gff for
BS10881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1030..2079 | 9..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:05:06 Download gff for
BS10881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1037..2071 | 17..1051 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:05:06 Download gff for
BS10881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14454061..14454229 | 575..743 | 100 | -> | Plus |
X | 14459157..14459464 | 744..1051 | 100 | | Plus |
X | 14425187..14425356 | 66..235 | 100 | -> | Plus |
X | 14444317..14444527 | 236..446 | 100 | -> | Plus |
X | 14452969..14453096 | 447..574 | 100 | -> | Plus |
X | 14408273..14408321 | 17..65 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:23 Download gff for
BS10881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14353190..14353497 | 744..1051 | 100 | | Plus |
arm_X | 14338350..14338560 | 236..446 | 100 | -> | Plus |
arm_X | 14347002..14347129 | 447..574 | 100 | -> | Plus |
arm_X | 14348094..14348262 | 575..743 | 100 | -> | Plus |
arm_X | 14302306..14302354 | 17..65 | 100 | -> | Plus |
arm_X | 14319220..14319389 | 66..235 | 100 | -> | Plus |
BS10881.pep Sequence
Translation from 16 to 1050
> BS10881.pep
MSTHWIIFLGILCLLAGCTDGASKRFFTDFLQDLPTPGTGGPTFDTTIGT
NITGLVGKTVKLTCRVKNLGNRTVSWVRHRDIHLLTVGRYTYTSDQRFEA
MHSPHAEDWTLRIRYAQRKDSGIYECQISTTPPIGHSVYLNIVEPVTDII
GGPELHINRGSTINLTCIVKFAPEPPPTVIWSHNREIINFDSPRGGISLV
TEKGVLTTSRLLVQKAITQDSGLYTCTPSNANPTSVRVHIVDGEHPAAMH
TGNNGNSTASQPPVLLPLVLLTCSTLMLLQLVASCSTLVPATPPGCRTVQ
QASTFAEEKAMGQRSNRNCQDLQELEESQDLRRRGVERSAVPGT*
BS10881.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr8-PB | 344 | CG32600-PB | 1..344 | 1..344 | 1819 | 100 | Plus |
dpr8-PA | 344 | CG32600-PA | 1..344 | 1..344 | 1819 | 100 | Plus |
dpr6-PC | 390 | CG14162-PC | 13..316 | 5..292 | 754 | 48.1 | Plus |
dpr6-PF | 396 | CG14162-PF | 13..322 | 5..292 | 739 | 47.5 | Plus |
CG42596-PC | 282 | CG42596-PC | 50..258 | 41..249 | 732 | 59.8 | Plus |