Clone BS10882 Report

Search the DGRC for BS10882

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:82
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS10882.pep:
Sequenced Size:16

Clone Sequence Records

BS10882.3prime Sequence

453 bp (452 high quality bases) assembled on 2006-04-19

> BS10882.3prime
ATGGTCTAGAAAGCTTTTAAATCGTTTCATGTATTAGAATCATCGGCATA
AGTATTGGGGTTGCTTTCCGGTATTCTAGAAGTGTAAATAAATGTATATT
CAATGAAGATTTTCCATATAAGGGATAATCAGGGATGCGTATTTTTGGAG
GCGTGATTACGCTGATCACGCCACCTAAGTATATCAGCTTTGAACTATCA
ATAAATGGAGTGACACGCATGTATATGGAATGCGATGGCTGACCAATTGC
CGAAAAATTAAACCGAGGATCCCTCGCCGCCGTCAGAAATTCCCGCGCTG
CAGTCCTAAACTCCCACGCTGCCGTCAAAAAAGGTCCCACGCCGCCGTCC
AATCTTATAAGAATCCCGCGCCGCTGTCCAGAACCTCGATCCCTCGCTGC
AGTCCCGATCTCCGTCTCCCACGCCGCAGTCATCTCCATGTCGACTGATA
ACT

BS10882.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 18:58:05 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 18:45:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 230515..230937 439..17 2100 99.8 Minus
Blast to na_te.dros performed on 2015-02-12 18:45:36 has no hits.

BS10882.3prime Sim4 Records

Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:20:30 Download gff for BS10882.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 230505..230937 17..453 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:20:30 Download gff for BS10882.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 230505..230937 17..453 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:21:59 Download gff for BS10882.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 230505..230937 17..453 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:21:59 Download gff for BS10882.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 230505..230937 17..453 98   Minus

BS10882.5prime Sequence

453 bp (452 high quality bases) assembled on 2006-04-19

> BS10882.5prime
GAAGTTATCAGTCGACATGGAGATGACTGCGGCGTGGGAGACGGAGATCG
GGACTGCAGCGAGGGATCGAGGTTCTGGACAGCGGCGCGGGATTCTTATA
AGATTGGACGGCGGCGTGGGACCTTTTTTGACGGCAGCGTGGGAGTTTAG
GACTGCAGCGCGGGAATTTCTGACGGCGGCGAGGGATCCTCGGTTTAATT
TTTCGGCAATTGGTCAGCCATCGCATTCCATATACATGCGTGTCACTCCA
TTTATTGATAGTTCAAAGCTGATATACTTAGGTGGCGTGATCAGCGTAAT
CACGCCTCCAAAAATACGCATCCCTGATTATCCCTTATATGGAAAATCTT
CATTGAATATACATTTATTTACACTTCTAGAATACCGGAAAGCAACCCCA
ATACTTATGCCGATGATTCTAATACATGAAACGATTTAAAAGCTTTCTAG
ACC

BS10882.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 18:58:06 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 15:01:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 230515..230937 17..439 2100 99.8 Plus
Blast to na_te.dros performed on 2015-02-11 15:01:46 has no hits.

BS10882.5prime Sim4 Records

Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:57 Download gff for BS10882.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 230503..230937 1..439 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:57 Download gff for BS10882.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 230503..230937 1..439 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:05:27 Download gff for BS10882.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 230503..230937 1..439 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:05:27 Download gff for BS10882.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 230503..230937 1..439 98   Plus

BS10882.complete Sequence

455 bp assembled on 2006-11-01

> BS10882.complete
GAAGTTATCAGTCGACATGGAGATGACTGCGGCGTGGGAGACGGAGATCG
GGACTGCAGCGAGGGATCGAGGTTCTGGACAGCGGCGCGGGATTCTTATA
AGATTGGACGGCGGCGTGGGACCTTTTTTGACGGCAGCGTGGGAGTTTAG
GACTGCAGCGCGGGAATTTCTGACGGCGGCGAGGGATCCTCGGTTTAATT
TTTCGGCAATTGGTCAGCCATCGCATTCCATATACATGCGTGTCACTCCA
TTTATTGATAGTTCAAAGCTGATATACTTAGGTGGCGTGATCAGCGTAAT
CACGCCTCCAAAAATACGCATCCCTGATTATCCCTTATATGGAAAATCTT
CATTGAATATACATTTATTTACACTTCTAGAATACCGGAAAGCAACCCCA
ATACTTATGCCGATGATTCTAATACATGAAACGATTTAAAAGCTTTCTAG
ACCAT

BS10882.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 06:50:39 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 06:50:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 230515..230937 17..439 2100 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 06:50:38 has no hits.

BS10882.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 23:52:47 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:53 Download gff for BS10882.complete
Subject Subject Range Query Range Percent Splice Strand
3L 230515..230935 17..437 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:53 Download gff for BS10882.complete
Subject Subject Range Query Range Percent Splice Strand
3L 230515..230935 17..437 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:11 Download gff for BS10882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 230515..230935 17..437 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:11 Download gff for BS10882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 230515..230935 17..437 99   Plus

BS10882.pep Sequence

Translation from 16 to 438

> BS10882.pep
MEMTAAWETEIGTAARDRGSGQRRGILIRLDGGVGPFLTAAWEFRTAARE
FLTAARDPRFNFSAIGQPSHSIYMRVTPFIDSSKLIYLGGVISVITPPKI
RIPDYPLYGKSSLNIHLFTLLEYRKATPILMPMILIHETI*
Sequence BS10882.pep has no blast hits.