Clone BS10883 Report

Search the DGRC for BS10883

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:83
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS10883.pep:
Sequenced Size:16

Clone Sequence Records

BS10883.3prime Sequence

441 bp (440 high quality bases) assembled on 2006-04-19

> BS10883.3prime
ATGGTCTAGAAAGCTTTCAACAAAATACAGAACACAAAACACAGAGCCTA
ACCGTAACCGTAACAAAACAGTCATACAAATTAAGACGAATGGGGTTTAT
GGCACGAATTTTATGCGCATACAATACTAGGTACAAATAGACGTGTATCC
AACAAATTGACAATGGAACCGAACCGAGGCGGATGGCAAATAACCGGGCC
AAAACGCCACCGACCAGGATGGCTTGGATGGACTGGATGGGCTGGATGGT
ACGGAGACCACGAGGAGCCCGAACGAGGAGCGACAACAAATTAATAGAAC
AATCGGGCACACCGACGACAACGGAACGGGCAAAAAATGAATGAGCACAT
AAAATATTGCATAAATAAATGAAATGAATTGAAATGAAAATGGCAATGTG
AGAATATACGTTGTATGTGTGGGTCATGTCGACTGATAACT

BS10883.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 18:58:07 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 22:23:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21328582..21328993 17..428 2060 100 Plus
Blast to na_te.dros performed 2015-02-10 22:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1A 1757 Dnet\R1A NEOR1A 1757bp 1063..1115 212..265 141 75.9 Plus

BS10883.3prime Sim4 Records

Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:34 Download gff for BS10883.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21328572..21328993 7..428 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:34 Download gff for BS10883.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21328572..21328993 7..428 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:47:57 Download gff for BS10883.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17154294..17154715 7..428 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:47:57 Download gff for BS10883.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17154294..17154715 7..428 99   Plus

BS10883.5prime Sequence

441 bp (440 high quality bases) assembled on 2006-04-19

> BS10883.5prime
GAAGTTATCAGTCGACATGACCCACACATACAACGTATATTCTCACATTG
CCATTTTCATTTCAATTCATTTCATTTATTTATGCAATATTTTATGTGCT
CATTCATTTTTTGCCCGTTCCGTTGTCGTCGGTGTGCCCGATTGTTCTAT
TAATTTGTTGTCGCTCCTCGTTCGGGCTCCTCGTGGTCTCCGTACCATCC
AGCCCATCCAGTCCATCCAAGCCATCCTGGTCGGTGGCGTTTTGGCCCGG
TTATTTGCCATCCGCCTCGGTTCGGTTCCATTGTCAATTTGTTGGATACA
CGTCTATTTGTACCTAGTATTGTATGCGCATAAAATTCGTGCCATAAACC
CCATTCGTCTTAATTTGTATGACTGTTTTGTTACGGTTACGGTTAGGCTC
TGTGTTTTGTGTTCTGTATTTTGTTGAAAGCTTTCTAGACC

BS10883.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 18:58:07 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 19:45:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21328582..21328993 427..16 2060 100 Minus
Blast to na_te.dros performed 2015-02-12 19:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1A 1757 Dnet\R1A NEOR1A 1757bp 1063..1115 232..179 141 75.9 Minus

BS10883.5prime Sim4 Records

Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:54:37 Download gff for BS10883.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21328572..21328993 16..437 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:54:37 Download gff for BS10883.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21328572..21328993 16..437 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:50:16 Download gff for BS10883.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17154294..17154715 16..437 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:50:16 Download gff for BS10883.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17154294..17154715 16..437 99   Minus

BS10883.complete Sequence

443 bp assembled on 2006-11-01

> BS10883.complete
GAAGTTATCAGTCGACATGACCCACACATACAACGTATATTCTCACATTG
CCATTTTCATTTCAATTCATTTCATTTATTTATGCAATATTTTATGTGCT
CATTCATTTTTTGCCCGTTCCGTTGTCGTCGGTGTGCCCGATTGTTCTAT
TAATTTGTTGTCGCTCCTCGTTCGGGCTCCTCGTGGTCTCCGTACCATCC
AGCCCATCCAGTCCATCCAAGCCATCCTGGTCGGTGGCGTTTTGGCCCGG
TTATTTGCCATCCGCCTCGGTTCGGTTCCATTGTCAATTTGTTGGATACA
CGTCTATTTGTACCTAGTATTGTATGCGCATAAAATTCGTGCCATAAACC
CCATTCGTCTTAATTTGTATGACTGTTTTGTTACGGTTACGGTTAGGCTC
TGTGTTTTGTGTTCTGTATTTTGTTGAAAGCTTTCTAGACCAT

BS10883.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 01:16:13 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 01:16:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21328582..21328993 427..16 2060 100 Minus
Blast to na_te.dros performed 2014-11-28 01:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1A 1757 Dnet\R1A NEOR1A 1757bp 1063..1115 232..179 141 75.9 Minus

BS10883.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 23:52:48 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:27 Download gff for BS10883.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21328583..21328992 17..426 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:27 Download gff for BS10883.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21328583..21328992 17..426 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:30 Download gff for BS10883.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17154305..17154714 17..426 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:30 Download gff for BS10883.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17154305..17154714 17..426 100   Minus

BS10883.pep Sequence

Translation from 16 to 426

> BS10883.pep
MTHTYNVYSHIAIFISIHFIYLCNILCAHSFFARSVVVGVPDCSINLLSL
LVRAPRGLRTIQPIQSIQAILVGGVLARLFAIRLGSVPLSICWIHVYLYL
VLYAHKIRAINPIRLNLYDCFVTVTVRLCVLCSVFC*
Sequence BS10883.pep has no blast hits.