Clone Sequence Records
BS10883.3prime Sequence
441 bp (440 high quality bases) assembled on 2006-04-19
> BS10883.3prime
ATGGTCTAGAAAGCTTTCAACAAAATACAGAACACAAAACACAGAGCCTA
ACCGTAACCGTAACAAAACAGTCATACAAATTAAGACGAATGGGGTTTAT
GGCACGAATTTTATGCGCATACAATACTAGGTACAAATAGACGTGTATCC
AACAAATTGACAATGGAACCGAACCGAGGCGGATGGCAAATAACCGGGCC
AAAACGCCACCGACCAGGATGGCTTGGATGGACTGGATGGGCTGGATGGT
ACGGAGACCACGAGGAGCCCGAACGAGGAGCGACAACAAATTAATAGAAC
AATCGGGCACACCGACGACAACGGAACGGGCAAAAAATGAATGAGCACAT
AAAATATTGCATAAATAAATGAAATGAATTGAAATGAAAATGGCAATGTG
AGAATATACGTTGTATGTGTGGGTCATGTCGACTGATAACT
BS10883.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 18:58:07 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 22:23:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21328582..21328993 | 17..428 | 2060 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 1063..1115 | 212..265 | 141 | 75.9 | Plus |
BS10883.3prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:34 Download gff for
BS10883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21328572..21328993 | 7..428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:34 Download gff for
BS10883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21328572..21328993 | 7..428 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:47:57 Download gff for
BS10883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17154294..17154715 | 7..428 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:47:57 Download gff for
BS10883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17154294..17154715 | 7..428 | 99 | | Plus |
BS10883.5prime Sequence
441 bp (440 high quality bases) assembled on 2006-04-19
> BS10883.5prime
GAAGTTATCAGTCGACATGACCCACACATACAACGTATATTCTCACATTG
CCATTTTCATTTCAATTCATTTCATTTATTTATGCAATATTTTATGTGCT
CATTCATTTTTTGCCCGTTCCGTTGTCGTCGGTGTGCCCGATTGTTCTAT
TAATTTGTTGTCGCTCCTCGTTCGGGCTCCTCGTGGTCTCCGTACCATCC
AGCCCATCCAGTCCATCCAAGCCATCCTGGTCGGTGGCGTTTTGGCCCGG
TTATTTGCCATCCGCCTCGGTTCGGTTCCATTGTCAATTTGTTGGATACA
CGTCTATTTGTACCTAGTATTGTATGCGCATAAAATTCGTGCCATAAACC
CCATTCGTCTTAATTTGTATGACTGTTTTGTTACGGTTACGGTTAGGCTC
TGTGTTTTGTGTTCTGTATTTTGTTGAAAGCTTTCTAGACC
BS10883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 18:58:07 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 19:45:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21328582..21328993 | 427..16 | 2060 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 19:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 1063..1115 | 232..179 | 141 | 75.9 | Minus |
BS10883.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:54:37 Download gff for
BS10883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21328572..21328993 | 16..437 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:54:37 Download gff for
BS10883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21328572..21328993 | 16..437 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:50:16 Download gff for
BS10883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17154294..17154715 | 16..437 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:50:16 Download gff for
BS10883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17154294..17154715 | 16..437 | 99 | | Minus |
BS10883.complete Sequence
443 bp assembled on 2006-11-01
> BS10883.complete
GAAGTTATCAGTCGACATGACCCACACATACAACGTATATTCTCACATTG
CCATTTTCATTTCAATTCATTTCATTTATTTATGCAATATTTTATGTGCT
CATTCATTTTTTGCCCGTTCCGTTGTCGTCGGTGTGCCCGATTGTTCTAT
TAATTTGTTGTCGCTCCTCGTTCGGGCTCCTCGTGGTCTCCGTACCATCC
AGCCCATCCAGTCCATCCAAGCCATCCTGGTCGGTGGCGTTTTGGCCCGG
TTATTTGCCATCCGCCTCGGTTCGGTTCCATTGTCAATTTGTTGGATACA
CGTCTATTTGTACCTAGTATTGTATGCGCATAAAATTCGTGCCATAAACC
CCATTCGTCTTAATTTGTATGACTGTTTTGTTACGGTTACGGTTAGGCTC
TGTGTTTTGTGTTCTGTATTTTGTTGAAAGCTTTCTAGACCAT
BS10883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 01:16:13 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 01:16:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21328582..21328993 | 427..16 | 2060 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:16:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 1063..1115 | 232..179 | 141 | 75.9 | Minus |
BS10883.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 23:52:48 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:27 Download gff for
BS10883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21328583..21328992 | 17..426 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:27 Download gff for
BS10883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21328583..21328992 | 17..426 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:30 Download gff for
BS10883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17154305..17154714 | 17..426 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:30 Download gff for
BS10883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17154305..17154714 | 17..426 | 100 | | Minus |
BS10883.pep Sequence
Translation from 16 to 426
> BS10883.pep
MTHTYNVYSHIAIFISIHFIYLCNILCAHSFFARSVVVGVPDCSINLLSL
LVRAPRGLRTIQPIQSIQAILVGGVLARLFAIRLGSVPLSICWIHVYLYL
VLYAHKIRAINPIRLNLYDCFVTVTVRLCVLCSVFC*
Sequence BS10883.pep has no blast hits.