Clone Sequence Records
BS10894.3prime Sequence
930 bp (832 high quality bases) assembled on 2006-04-19
> BS10894.3prime
ATGGTCTAGAAAGCTTTTACTCCTCCGGCCAGCCGAGATCCTCGCCGACC
AGCTCGTAAAATCGCTGATTGTACTCGGCGAAGAACTTTCGCAATCTGGA
GACCACCACGGGATCCACATGCGGATGCTTCCTGCCCTTCGTCTCCCGGA
GGCAGCGATCCCCGTTGTCATAGCGCAGACAGTAGAAGCCCTTGGTCTCA
TTGAAGTAAAAGTGCTCGCTATTCACCCGATGCTCAATGCCCAAGAAAGC
CTCGATGCGTTTCAGCTGAGAAACCGGATCTTCGATGAGGCGATCCCCAT
TGACCACCAGCAGCTGCTCCCGCGGAAATACCTCCAGCCAGCGATGGAGG
TGGACATGGTACATGGAGATGCTGAGCGGTCGATAAGCCTCGTTAACGGT
GCCATTGGGAAATATGGCCAGCTCCTCAAAGGACTTGGCTGCCATTTGGG
CGGCGCTCGCCATTGGCGACATTGTTGTCGTGGTCATCGCAGCTCCAGCG
ACACCACCGCCACTGCCCAACGCCTGTCTCCTGACCAAAGACGAAGATAC
CGTTTTGCCTTTCGTCTCCTTGGCGCCCGCCCCACTGCCACCCAACAGGG
CATTGTCATAGCCACGGGCCGACTGCAGTTTGGCATACAGCAGTGATTGT
GTTGGCATCTTGGCAGCTGCGGTCCCGCTTCCCCCACCACCACCAGCACC
ACCACCACCTGCCCCACCGCCAGAACTCTCCCTCGGACTCGGTGGATCCT
TCTCGGCCAACGGCAGAATGGCGGTGGCCGCATGGCTACGCAGCTGCGTG
TAGTCCGAAATGGCCCGGGTCACCGGCTCCCGGACAATCAGGAGCAGCTT
GATGCTCGCATTCATGGCCCGCACACGTTCCGGCACCTCTGGCGACACAA
AGTAGCTGGGACTCTTTTCGATGGTTATCT
BS10894.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33147-PA | 1818 | CG33147-RA | 905..1818 | 930..17 | 4570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-A-RB | 5724 | CG33147-RB | 2312..3225 | 930..17 | 4570 | 100 | Minus |
Hs3st-A-RA | 5570 | CG33147-RA | 2312..3225 | 930..17 | 4570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18750801..18751256 | 888..433 | 2280 | 100 | Minus |
2R | 25286936 | 2R | 18751952..18752176 | 241..17 | 1125 | 100 | Minus |
2R | 25286936 | 2R | 18751639..18751833 | 434..240 | 975 | 100 | Minus |
2R | 25286936 | 2R | 18748898..18748944 | 930..884 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:37:25 has no hits.
BS10894.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:53:08 Download gff for
BS10894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33147-PA | 905..1818 | 17..930 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:18:33 Download gff for
BS10894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33147-PA | 905..1818 | 17..930 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:18 Download gff for
BS10894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 2312..3228 | 12..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:31:34 Download gff for
BS10894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 2312..3228 | 12..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:31:34 Download gff for
BS10894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18748898..18748941 | 887..930 | 100 | -> | Minus |
2R | 18750803..18751254 | 435..886 | 100 | -> | Minus |
2R | 18751639..18751832 | 241..434 | 100 | -> | Minus |
2R | 18751953..18752179 | 12..240 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:18 Download gff for
BS10894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14636403..14636446 | 887..930 | 100 | -> | Minus |
arm_2R | 14638308..14638759 | 435..886 | 100 | -> | Minus |
arm_2R | 14639144..14639337 | 241..434 | 100 | -> | Minus |
arm_2R | 14639458..14639684 | 12..240 | 99 | | Minus |
BS10894.5prime Sequence
947 bp (744 high quality bases) assembled on 2006-04-19
> BS10894.5prime
GAAGTTATCAGTCGACATGACTGCCGCCAAAAGACGTGCGAGCAGCAGCA
ACAGCAGCGGCAGCAGCAACACTAGCGGCAGCAGTAATGGCAACGAGCAG
CACTCCCAGCAGCAACATCTGCAGCTGCAGCAGCAGCAACAGCAGCATGC
CCAGCCAAACGAGTACCAACAGTTGCTGCAGCATCCCCACCATCACTATC
AGCAACACTACAGCGGCAACAACAACACCAGCGGCAACAACAGCAATAGC
AGCAACACGCAGCAATACCACCAGAGACAGCAGCAACATCAGGCGACATT
GCGCGACTGTTCCGTCAAATTGCCGCTGGATATCCTATGGCTACCGAAAT
CGGCAATGCGGCCGGCGGGTCCTGATACCTCGCCCACGGACTGCATCCTG
GTGGTGGGCGTTTCCCGTCCAAAATTGGCCGTCGTCTTCCTTACGGTCAT
GTTGATCTCTCTGTTCCTCACCTTCCATGTCCTGTACGATAGTGCCGTAT
ACAATATCCAAGCGGCCCAGGCTGTCCACGAAAGGCATCGTCTATCTATG
ACCGCCTCCGCATCGGCTCTGGCATCCTCCTCCTCATCGTCGTCCAATTC
CGGCTCCTCCTTCTCCTCCGCCGGTGGCGCCTCCAATCATCTGCCCGTGT
TCGTAAAGCCCGTGCCCAGCTCCAATCAGCTCAGCCATCCCATGGTTTTT
CCCTCCAGCCGTGTGCACTTTCCAAAAACCAGTCGACGGTTGCCGCAGGC
ACTCATCATCGGTGTGCGAAAATGTGGTACACGGGCGCTGCTGGAGATGC
TCTACCTACATCCGCGGATCCAGAAGGCCGGCGGTGAGGTGCACTTCTTC
GACCGGGACGAGAACTACCTGAAAGGTCTGGAGTGGTACCCGCAGAAGAT
GCCACATTCGTTTCCGTGCCCAGATAACCATCGAAAAGAGTCCCAGC
BS10894.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33147-PA | 1818 | CG33147-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
CG33147-PA | 1818 | CG33147-RA | 895..930 | 912..947 | 155 | 97.2 | Plus |
CG32082-PA | 3225 | CG32082-RA | 753..781 | 211..239 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-A-RB | 5724 | CG33147-RB | 1408..2337 | 17..947 | 4570 | 99.6 | Plus |
Hs3st-A-RA | 5570 | CG33147-RA | 1408..2337 | 17..947 | 4570 | 99.6 | Plus |
CG15772-RB | 1691 | CG15772-RB | 629..791 | 121..292 | 185 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18748051..18748463 | 337..749 | 2065 | 100 | Plus |
2R | 25286936 | 2R | 18745917..18746236 | 17..336 | 1600 | 100 | Plus |
2R | 25286936 | 2R | 18748723..18748923 | 746..947 | 900 | 97.5 | Plus |
Blast to na_te.dros performed 2015-02-11 09:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..7000 | 2..295 | 392 | 64.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1129 | 218..292 | 177 | 73.3 | Plus |
BS10894.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:53:09 Download gff for
BS10894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33147-PA | 1..930 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:18:35 Download gff for
BS10894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33147-PA | 1..930 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:58:03 Download gff for
BS10894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 1408..2337 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:02 Download gff for
BS10894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 1408..2337 | 17..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:02 Download gff for
BS10894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18748726..18748923 | 749..947 | 98 | | Plus |
2R | 18745917..18746236 | 17..336 | 100 | -> | Plus |
2R | 18748051..18748462 | 337..748 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:58:03 Download gff for
BS10894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14633422..14633741 | 17..336 | 100 | -> | Plus |
arm_2R | 14635556..14635967 | 337..748 | 100 | -> | Plus |
arm_2R | 14636231..14636428 | 749..947 | 98 | | Plus |
BS10894.complete Sequence
1850 bp assembled on 2009-08-24
GenBank Submission: KX806034
> BS10894.complete
GAAGTTATCAGTCGACATGACTGCCGCCAAAAGACGTGCGAGCAGCAGCA
ACAGCAGCGGCAGCAGCAACACTAGCGGCAGCAGTAATGGCAACGAGCAG
CACTCCCAGCAGCAACATCTGCAGCTGCAGCAGCAGCAACAGCAGCATGC
CCAGCCAAACGAGTACCAACAGTTGCTGCAGCATCCCCACCATCACTATC
AGCAACACTACAGCGGCAACAACAACACCAGCGGCAACAACAGCAATAGC
AGCAACACGCAGCAATACCACCAGAGACAGCAGCAACATCAGGCGACATT
GCGCGACTGTTCCGTCAAATTGCCGCTGGATATCCTATGGCTACCGAAAT
CGGCAATGCGGCCGGCGGGTCCTGATACCTCGCCCACGGACTGCATCCTG
GTGGTGGGCGTTTCCCGTCCAAAATTGGCCGTCGTCTTCCTTACGGTCAT
GTTGATCTCTCTGTTCCTCACCTTCCATGTCCTGTACGATAGTGCCGTAT
ACAATATCCAAGCGGCCCAGGCTGTCCACGAAAGGCATCGTCTATCTATG
ACCGCCTCCGCATCGGCTCTGGCATCCTCCTCCTCATCGTCGTCCAATTC
CGGCTCCTCCTTCTCCTCCGCCGGTGGCGCCTCCAATCATCTGCCCGTGT
TCGTAAAGCCCGTGCCCAGCTCCAATCAGCTCAGCCATCCCATGGTTTTT
CCCTCCAGCCGTGTGCACTTTCCAAAAACCAGTCGACGGTTGCCGCAGGC
ACTCATCATCGGTGTGCGAAAATGTGGTACACGGGCGCTGCTGGAGATGC
TCTACCTACATCCGCGGATCCAGAAGGCCGGCGGTGAGGTGCACTTCTTC
GACCGGGACGAGAACTACCTGAAAGGTCTGGAGTGGTACCGCAAGAAGAT
GCCACATTCGTTCCGTGGCCAGATAACCATCGAAAAGAGTCCCAGCTACT
TTGTGTCGCCAGAGGTGCCGGAACGTGTGCGGGCCATGAATGCGAGCATC
AAGCTGCTCCTGATTGTCCGGGAGCCGGTGACCCGGGCCATTTCGGACTA
CACGCAGCTGCGTAGCCATGCGGCCACCGCCATTCTGCCGTTGGCCGAGA
AGGATCCACCGAGTCCGAGGGAGAGTTCTGGCGGTGGGGCAGGTGGTGGT
GGTGCTGGTGGTGGTGGGGGAAGCGGGACCGCAGCTGCCAAGATGCCAAC
ACAATCACTGCTGTATGCCAAACTGCAGTCGGCCCGTGGCTATGACAATG
CCCTGTTGGGTGGCAGTGGGGCGGGCGCCAAGGAGACGAAAGGCAAAACG
GTATCTTCGTCTTTGGTCAGGAGACAGGCGTTGGGCAGTGGCGGTGGTGT
CGCTGGAGCTGCGATGACCACGACAACAATGTCGCCAATGGCGAGCGCCG
CCCAAATGGCAGCCAAGTCCTTTGAGGAGCTGGCCATATTTCCCAATGGC
ACCGTTAACGAGGCTTATCGACCGCTCAGCATCTCCATGTACCATGTCCA
CCTCCATCGCTGGCTGGAGGTATTTCCGCGGGAGCAGCTGCTGGTGGTCA
ATGGGGATCGCCTCATCGAAGATCCGGTTTCTCAGCTGAAACGCATCGAG
GCTTTCTTGGGCATTGAGCATCGGGTGAATAGCGAGCACTTTTACTTCAA
TGAGACCAAGGGCTTCTACTGTCTGCGCTATGACAACGGGGATCGCTGCC
TCCGGGAGACGAAGGGCAGGAAGCATCCGCATGTGGATCCCGTGGTGGTC
TCCAGATTGCGAAAGTTCTTCGCCGAGTACAATCAGCGATTTTACGAGCT
GGTCGGCGAGGATCTCGGCTGGCCGGAGGAGTAAAAGCTTTCTAGACCAT
BS10894.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:29:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-A-RB | 1818 | CG33147-PB | 1..1818 | 17..1834 | 9090 | 100 | Plus |
Hs3st-A-RA | 1818 | CG33147-PA | 1..1818 | 17..1834 | 9090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-A-RB | 5724 | CG33147-RB | 1408..3225 | 17..1834 | 9090 | 100 | Plus |
Hs3st-A-RA | 5570 | CG33147-RA | 1408..3225 | 17..1834 | 9090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18750801..18751256 | 963..1418 | 2280 | 100 | Plus |
2R | 25286936 | 2R | 18748051..18748463 | 337..749 | 2065 | 100 | Plus |
2R | 25286936 | 2R | 18745917..18746236 | 17..336 | 1600 | 100 | Plus |
2R | 25286936 | 2R | 18751952..18752176 | 1610..1834 | 1125 | 100 | Plus |
2R | 25286936 | 2R | 18748723..18748944 | 746..967 | 1110 | 100 | Plus |
2R | 25286936 | 2R | 18751639..18751833 | 1417..1611 | 975 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..7000 | 2..295 | 392 | 64.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1129 | 218..292 | 177 | 73.3 | Plus |
BS10894.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:07 Download gff for
BS10894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 1393..3208 | 17..1832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:17 Download gff for
BS10894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 1408..3223 | 17..1832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:57 Download gff for
BS10894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 1408..3223 | 17..1832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:57 Download gff for
BS10894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18745917..18746236 | 17..336 | 100 | -> | Plus |
2R | 18748051..18748462 | 337..748 | 100 | -> | Plus |
2R | 18748726..18748941 | 749..964 | 100 | -> | Plus |
2R | 18750803..18751254 | 965..1416 | 100 | -> | Plus |
2R | 18751639..18751832 | 1417..1610 | 100 | -> | Plus |
2R | 18751953..18752174 | 1611..1832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:17 Download gff for
BS10894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14633422..14633741 | 17..336 | 100 | -> | Plus |
arm_2R | 14635556..14635967 | 337..748 | 100 | -> | Plus |
arm_2R | 14636231..14636446 | 749..964 | 100 | -> | Plus |
arm_2R | 14638308..14638759 | 965..1416 | 100 | -> | Plus |
arm_2R | 14639144..14639337 | 1417..1610 | 100 | -> | Plus |
arm_2R | 14639458..14639679 | 1611..1832 | 100 | | Plus |
BS10894.pep Sequence
Translation from 16 to 1833
> BS10894.pep
MTAAKRRASSSNSSGSSNTSGSSNGNEQHSQQQHLQLQQQQQQHAQPNEY
QQLLQHPHHHYQQHYSGNNNTSGNNSNSSNTQQYHQRQQQHQATLRDCSV
KLPLDILWLPKSAMRPAGPDTSPTDCILVVGVSRPKLAVVFLTVMLISLF
LTFHVLYDSAVYNIQAAQAVHERHRLSMTASASALASSSSSSSNSGSSFS
SAGGASNHLPVFVKPVPSSNQLSHPMVFPSSRVHFPKTSRRLPQALIIGV
RKCGTRALLEMLYLHPRIQKAGGEVHFFDRDENYLKGLEWYRKKMPHSFR
GQITIEKSPSYFVSPEVPERVRAMNASIKLLLIVREPVTRAISDYTQLRS
HAATAILPLAEKDPPSPRESSGGGAGGGGAGGGGGSGTAAAKMPTQSLLY
AKLQSARGYDNALLGGSGAGAKETKGKTVSSSLVRRQALGSGGGVAGAAM
TTTTMSPMASAAQMAAKSFEELAIFPNGTVNEAYRPLSISMYHVHLHRWL
EVFPREQLLVVNGDRLIEDPVSQLKRIEAFLGIEHRVNSEHFYFNETKGF
YCLRYDNGDRCLRETKGRKHPHVDPVVVSRLRKFFAEYNQRFYELVGEDL
GWPEE*
BS10894.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-A-PB | 605 | CG33147-PB | 1..605 | 1..605 | 3138 | 100 | Plus |
Hs3st-A-PA | 605 | CG33147-PA | 1..605 | 1..605 | 3138 | 100 | Plus |
Hs3st-B-PB | 384 | CG7890-PB | 30..240 | 145..353 | 400 | 44 | Plus |
Hs3st-B-PA | 384 | CG7890-PA | 30..240 | 145..353 | 400 | 44 | Plus |
Hs3st-B-PB | 384 | CG7890-PB | 226..384 | 452..603 | 336 | 43.8 | Plus |
Hs3st-B-PA | 384 | CG7890-PA | 226..384 | 452..603 | 336 | 43.8 | Plus |
sfl-PB | 1048 | CG8339-PB | 915..1028 | 485..596 | 166 | 28.9 | Plus |