Clone BS10894 Report

Search the DGRC for BS10894

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptHs3st-A-RA
Protein status:BS10894.pep: full length peptide match
Sequenced Size:1850

Clone Sequence Records

BS10894.3prime Sequence

930 bp (832 high quality bases) assembled on 2006-04-19

> BS10894.3prime
ATGGTCTAGAAAGCTTTTACTCCTCCGGCCAGCCGAGATCCTCGCCGACC
AGCTCGTAAAATCGCTGATTGTACTCGGCGAAGAACTTTCGCAATCTGGA
GACCACCACGGGATCCACATGCGGATGCTTCCTGCCCTTCGTCTCCCGGA
GGCAGCGATCCCCGTTGTCATAGCGCAGACAGTAGAAGCCCTTGGTCTCA
TTGAAGTAAAAGTGCTCGCTATTCACCCGATGCTCAATGCCCAAGAAAGC
CTCGATGCGTTTCAGCTGAGAAACCGGATCTTCGATGAGGCGATCCCCAT
TGACCACCAGCAGCTGCTCCCGCGGAAATACCTCCAGCCAGCGATGGAGG
TGGACATGGTACATGGAGATGCTGAGCGGTCGATAAGCCTCGTTAACGGT
GCCATTGGGAAATATGGCCAGCTCCTCAAAGGACTTGGCTGCCATTTGGG
CGGCGCTCGCCATTGGCGACATTGTTGTCGTGGTCATCGCAGCTCCAGCG
ACACCACCGCCACTGCCCAACGCCTGTCTCCTGACCAAAGACGAAGATAC
CGTTTTGCCTTTCGTCTCCTTGGCGCCCGCCCCACTGCCACCCAACAGGG
CATTGTCATAGCCACGGGCCGACTGCAGTTTGGCATACAGCAGTGATTGT
GTTGGCATCTTGGCAGCTGCGGTCCCGCTTCCCCCACCACCACCAGCACC
ACCACCACCTGCCCCACCGCCAGAACTCTCCCTCGGACTCGGTGGATCCT
TCTCGGCCAACGGCAGAATGGCGGTGGCCGCATGGCTACGCAGCTGCGTG
TAGTCCGAAATGGCCCGGGTCACCGGCTCCCGGACAATCAGGAGCAGCTT
GATGCTCGCATTCATGGCCCGCACACGTTCCGGCACCTCTGGCGACACAA
AGTAGCTGGGACTCTTTTCGATGGTTATCT

BS10894.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG33147-PA 1818 CG33147-RA 905..1818 930..17 4570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-A-RB 5724 CG33147-RB 2312..3225 930..17 4570 100 Minus
Hs3st-A-RA 5570 CG33147-RA 2312..3225 930..17 4570 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18750801..18751256 888..433 2280 100 Minus
2R 25286936 2R 18751952..18752176 241..17 1125 100 Minus
2R 25286936 2R 18751639..18751833 434..240 975 100 Minus
2R 25286936 2R 18748898..18748944 930..884 235 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:37:25 has no hits.

BS10894.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:53:08 Download gff for BS10894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33147-PA 905..1818 17..930 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:18:33 Download gff for BS10894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33147-PA 905..1818 17..930 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:18 Download gff for BS10894.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 2312..3228 12..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:31:34 Download gff for BS10894.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 2312..3228 12..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:31:34 Download gff for BS10894.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18748898..18748941 887..930 100 -> Minus
2R 18750803..18751254 435..886 100 -> Minus
2R 18751639..18751832 241..434 100 -> Minus
2R 18751953..18752179 12..240 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:18 Download gff for BS10894.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14636403..14636446 887..930 100 -> Minus
arm_2R 14638308..14638759 435..886 100 -> Minus
arm_2R 14639144..14639337 241..434 100 -> Minus
arm_2R 14639458..14639684 12..240 99   Minus

BS10894.5prime Sequence

947 bp (744 high quality bases) assembled on 2006-04-19

> BS10894.5prime
GAAGTTATCAGTCGACATGACTGCCGCCAAAAGACGTGCGAGCAGCAGCA
ACAGCAGCGGCAGCAGCAACACTAGCGGCAGCAGTAATGGCAACGAGCAG
CACTCCCAGCAGCAACATCTGCAGCTGCAGCAGCAGCAACAGCAGCATGC
CCAGCCAAACGAGTACCAACAGTTGCTGCAGCATCCCCACCATCACTATC
AGCAACACTACAGCGGCAACAACAACACCAGCGGCAACAACAGCAATAGC
AGCAACACGCAGCAATACCACCAGAGACAGCAGCAACATCAGGCGACATT
GCGCGACTGTTCCGTCAAATTGCCGCTGGATATCCTATGGCTACCGAAAT
CGGCAATGCGGCCGGCGGGTCCTGATACCTCGCCCACGGACTGCATCCTG
GTGGTGGGCGTTTCCCGTCCAAAATTGGCCGTCGTCTTCCTTACGGTCAT
GTTGATCTCTCTGTTCCTCACCTTCCATGTCCTGTACGATAGTGCCGTAT
ACAATATCCAAGCGGCCCAGGCTGTCCACGAAAGGCATCGTCTATCTATG
ACCGCCTCCGCATCGGCTCTGGCATCCTCCTCCTCATCGTCGTCCAATTC
CGGCTCCTCCTTCTCCTCCGCCGGTGGCGCCTCCAATCATCTGCCCGTGT
TCGTAAAGCCCGTGCCCAGCTCCAATCAGCTCAGCCATCCCATGGTTTTT
CCCTCCAGCCGTGTGCACTTTCCAAAAACCAGTCGACGGTTGCCGCAGGC
ACTCATCATCGGTGTGCGAAAATGTGGTACACGGGCGCTGCTGGAGATGC
TCTACCTACATCCGCGGATCCAGAAGGCCGGCGGTGAGGTGCACTTCTTC
GACCGGGACGAGAACTACCTGAAAGGTCTGGAGTGGTACCCGCAGAAGAT
GCCACATTCGTTTCCGTGCCCAGATAACCATCGAAAAGAGTCCCAGC

BS10894.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG33147-PA 1818 CG33147-RA 1..874 17..890 4370 100 Plus
CG33147-PA 1818 CG33147-RA 895..930 912..947 155 97.2 Plus
CG32082-PA 3225 CG32082-RA 753..781 211..239 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-A-RB 5724 CG33147-RB 1408..2337 17..947 4570 99.6 Plus
Hs3st-A-RA 5570 CG33147-RA 1408..2337 17..947 4570 99.6 Plus
CG15772-RB 1691 CG15772-RB 629..791 121..292 185 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18748051..18748463 337..749 2065 100 Plus
2R 25286936 2R 18745917..18746236 17..336 1600 100 Plus
2R 25286936 2R 18748723..18748923 746..947 900 97.5 Plus
Blast to na_te.dros performed 2015-02-11 09:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..7000 2..295 392 64.9 Plus
roo 9092 roo DM_ROO 9092bp 1059..1129 218..292 177 73.3 Plus

BS10894.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:53:09 Download gff for BS10894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33147-PA 1..930 17..947 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:18:35 Download gff for BS10894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33147-PA 1..930 17..947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:58:03 Download gff for BS10894.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1408..2337 17..947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:02 Download gff for BS10894.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1408..2337 17..947 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:02 Download gff for BS10894.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18748726..18748923 749..947 98   Plus
2R 18745917..18746236 17..336 100 -> Plus
2R 18748051..18748462 337..748 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:58:03 Download gff for BS10894.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14633422..14633741 17..336 100 -> Plus
arm_2R 14635556..14635967 337..748 100 -> Plus
arm_2R 14636231..14636428 749..947 98   Plus

BS10894.complete Sequence

1850 bp assembled on 2009-08-24

GenBank Submission: KX806034

> BS10894.complete
GAAGTTATCAGTCGACATGACTGCCGCCAAAAGACGTGCGAGCAGCAGCA
ACAGCAGCGGCAGCAGCAACACTAGCGGCAGCAGTAATGGCAACGAGCAG
CACTCCCAGCAGCAACATCTGCAGCTGCAGCAGCAGCAACAGCAGCATGC
CCAGCCAAACGAGTACCAACAGTTGCTGCAGCATCCCCACCATCACTATC
AGCAACACTACAGCGGCAACAACAACACCAGCGGCAACAACAGCAATAGC
AGCAACACGCAGCAATACCACCAGAGACAGCAGCAACATCAGGCGACATT
GCGCGACTGTTCCGTCAAATTGCCGCTGGATATCCTATGGCTACCGAAAT
CGGCAATGCGGCCGGCGGGTCCTGATACCTCGCCCACGGACTGCATCCTG
GTGGTGGGCGTTTCCCGTCCAAAATTGGCCGTCGTCTTCCTTACGGTCAT
GTTGATCTCTCTGTTCCTCACCTTCCATGTCCTGTACGATAGTGCCGTAT
ACAATATCCAAGCGGCCCAGGCTGTCCACGAAAGGCATCGTCTATCTATG
ACCGCCTCCGCATCGGCTCTGGCATCCTCCTCCTCATCGTCGTCCAATTC
CGGCTCCTCCTTCTCCTCCGCCGGTGGCGCCTCCAATCATCTGCCCGTGT
TCGTAAAGCCCGTGCCCAGCTCCAATCAGCTCAGCCATCCCATGGTTTTT
CCCTCCAGCCGTGTGCACTTTCCAAAAACCAGTCGACGGTTGCCGCAGGC
ACTCATCATCGGTGTGCGAAAATGTGGTACACGGGCGCTGCTGGAGATGC
TCTACCTACATCCGCGGATCCAGAAGGCCGGCGGTGAGGTGCACTTCTTC
GACCGGGACGAGAACTACCTGAAAGGTCTGGAGTGGTACCGCAAGAAGAT
GCCACATTCGTTCCGTGGCCAGATAACCATCGAAAAGAGTCCCAGCTACT
TTGTGTCGCCAGAGGTGCCGGAACGTGTGCGGGCCATGAATGCGAGCATC
AAGCTGCTCCTGATTGTCCGGGAGCCGGTGACCCGGGCCATTTCGGACTA
CACGCAGCTGCGTAGCCATGCGGCCACCGCCATTCTGCCGTTGGCCGAGA
AGGATCCACCGAGTCCGAGGGAGAGTTCTGGCGGTGGGGCAGGTGGTGGT
GGTGCTGGTGGTGGTGGGGGAAGCGGGACCGCAGCTGCCAAGATGCCAAC
ACAATCACTGCTGTATGCCAAACTGCAGTCGGCCCGTGGCTATGACAATG
CCCTGTTGGGTGGCAGTGGGGCGGGCGCCAAGGAGACGAAAGGCAAAACG
GTATCTTCGTCTTTGGTCAGGAGACAGGCGTTGGGCAGTGGCGGTGGTGT
CGCTGGAGCTGCGATGACCACGACAACAATGTCGCCAATGGCGAGCGCCG
CCCAAATGGCAGCCAAGTCCTTTGAGGAGCTGGCCATATTTCCCAATGGC
ACCGTTAACGAGGCTTATCGACCGCTCAGCATCTCCATGTACCATGTCCA
CCTCCATCGCTGGCTGGAGGTATTTCCGCGGGAGCAGCTGCTGGTGGTCA
ATGGGGATCGCCTCATCGAAGATCCGGTTTCTCAGCTGAAACGCATCGAG
GCTTTCTTGGGCATTGAGCATCGGGTGAATAGCGAGCACTTTTACTTCAA
TGAGACCAAGGGCTTCTACTGTCTGCGCTATGACAACGGGGATCGCTGCC
TCCGGGAGACGAAGGGCAGGAAGCATCCGCATGTGGATCCCGTGGTGGTC
TCCAGATTGCGAAAGTTCTTCGCCGAGTACAATCAGCGATTTTACGAGCT
GGTCGGCGAGGATCTCGGCTGGCCGGAGGAGTAAAAGCTTTCTAGACCAT

BS10894.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-A-RB 1818 CG33147-PB 1..1818 17..1834 9090 100 Plus
Hs3st-A-RA 1818 CG33147-PA 1..1818 17..1834 9090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-A-RB 5724 CG33147-RB 1408..3225 17..1834 9090 100 Plus
Hs3st-A-RA 5570 CG33147-RA 1408..3225 17..1834 9090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18750801..18751256 963..1418 2280 100 Plus
2R 25286936 2R 18748051..18748463 337..749 2065 100 Plus
2R 25286936 2R 18745917..18746236 17..336 1600 100 Plus
2R 25286936 2R 18751952..18752176 1610..1834 1125 100 Plus
2R 25286936 2R 18748723..18748944 746..967 1110 100 Plus
2R 25286936 2R 18751639..18751833 1417..1611 975 100 Plus
Blast to na_te.dros performed 2014-11-28 01:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..7000 2..295 392 64.9 Plus
roo 9092 roo DM_ROO 9092bp 1059..1129 218..292 177 73.3 Plus

BS10894.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:07 Download gff for BS10894.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1393..3208 17..1832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:17 Download gff for BS10894.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1408..3223 17..1832 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:57 Download gff for BS10894.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1408..3223 17..1832 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:57 Download gff for BS10894.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18745917..18746236 17..336 100 -> Plus
2R 18748051..18748462 337..748 100 -> Plus
2R 18748726..18748941 749..964 100 -> Plus
2R 18750803..18751254 965..1416 100 -> Plus
2R 18751639..18751832 1417..1610 100 -> Plus
2R 18751953..18752174 1611..1832 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:17 Download gff for BS10894.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14633422..14633741 17..336 100 -> Plus
arm_2R 14635556..14635967 337..748 100 -> Plus
arm_2R 14636231..14636446 749..964 100 -> Plus
arm_2R 14638308..14638759 965..1416 100 -> Plus
arm_2R 14639144..14639337 1417..1610 100 -> Plus
arm_2R 14639458..14639679 1611..1832 100   Plus

BS10894.pep Sequence

Translation from 16 to 1833

> BS10894.pep
MTAAKRRASSSNSSGSSNTSGSSNGNEQHSQQQHLQLQQQQQQHAQPNEY
QQLLQHPHHHYQQHYSGNNNTSGNNSNSSNTQQYHQRQQQHQATLRDCSV
KLPLDILWLPKSAMRPAGPDTSPTDCILVVGVSRPKLAVVFLTVMLISLF
LTFHVLYDSAVYNIQAAQAVHERHRLSMTASASALASSSSSSSNSGSSFS
SAGGASNHLPVFVKPVPSSNQLSHPMVFPSSRVHFPKTSRRLPQALIIGV
RKCGTRALLEMLYLHPRIQKAGGEVHFFDRDENYLKGLEWYRKKMPHSFR
GQITIEKSPSYFVSPEVPERVRAMNASIKLLLIVREPVTRAISDYTQLRS
HAATAILPLAEKDPPSPRESSGGGAGGGGAGGGGGSGTAAAKMPTQSLLY
AKLQSARGYDNALLGGSGAGAKETKGKTVSSSLVRRQALGSGGGVAGAAM
TTTTMSPMASAAQMAAKSFEELAIFPNGTVNEAYRPLSISMYHVHLHRWL
EVFPREQLLVVNGDRLIEDPVSQLKRIEAFLGIEHRVNSEHFYFNETKGF
YCLRYDNGDRCLRETKGRKHPHVDPVVVSRLRKFFAEYNQRFYELVGEDL
GWPEE*

BS10894.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-A-PB 605 CG33147-PB 1..605 1..605 3138 100 Plus
Hs3st-A-PA 605 CG33147-PA 1..605 1..605 3138 100 Plus
Hs3st-B-PB 384 CG7890-PB 30..240 145..353 400 44 Plus
Hs3st-B-PA 384 CG7890-PA 30..240 145..353 400 44 Plus
Hs3st-B-PB 384 CG7890-PB 226..384 452..603 336 43.8 Plus
Hs3st-B-PA 384 CG7890-PA 226..384 452..603 336 43.8 Plus
sfl-PB 1048 CG8339-PB 915..1028 485..596 166 28.9 Plus