Clone BS10896 Report

Search the DGRC for BS10896

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG30497-RB
Protein status:BS10896.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10896.3prime Sequence

934 bp (823 high quality bases) assembled on 2006-04-19

> BS10896.3prime
ATGGTCTAGAAAGCTTTCACGTGCTCAGCCAGGTGGAGTTGCACGTGCAG
ATGGTGCTGGGGATCACAGGTGCATAGTAGACGCCGTTGGCATAGATGAG
TCCCGGCGGACCGGCCTGTATCTGTATGGTCTGTGGTGCCGCTGTCGCCG
TCTGATCCGCGCTGCTCGTGCAGCACACGGCGGCTGGGGCGGCCTGTTGC
ACATAAATGGTCTGCGCCTGGCCCGTGGGCGGCGCCTGCGGGACAAGGGT
CAGGGTAGTTGCCTGCTGCGCCTGCTGCTGTTGCGTCTGTGTCTGCTGCT
GCTGCTGTTGCTGCTGCGCTGGGTCAAGGAACTGATGCTGACGCTGCTGC
TGCTGCTGCTGCTGATTTTGCTGATGCTGCTGCTGCTGCTGTTGCTGCTG
GTACTTCTCCTGGGCCTGCTGCTGCTGCTGCTTCTCCTGCTTGTTGAAGA
GCACCTGAGCGGCCAGCGACTGGATTAGATGGAGCGATTGGCGCCGCTCG
TGGCCCATTAGACAGACCGTCGACATCTCGACTACCTCGCGTAAATGCAT
CAGGTACTGATACTGCAGCGGTTCCTCATCGACGCCCCAGAAATGGTTAC
GCAAGTAGGCCTCCAGCTTGGTGGTCTGCGTATTGATGTCCGGGAAATCG
ATGAAGAAGCGCGAGCACATGTAGCGCTCCAGGGTCTTGATGAGCTGCGA
GTCGACGGCCTTGTAGTTACGCACCAATAGATTGCAGTACTTGAGCAGGC
CGCCGCCTCGTATCTCCTCCGGCTGACGCGTTGAGATCAGTTTCTTTTGC
AAATGGTAGAGTGCCTCCTGGAAGTCCCCGTAGACCGATTCGCCGACCAC
CGTTGGATAGAAAGTCTCCGAGATGGGCAGAGCGGCGCAGTCGTAGAAGA
GCAGCAGCGAGTCCAGCACAATCTGGAACGAGTC

BS10896.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG30497-PA 2634 CG30497-RA 1717..2634 934..17 4540 99.7 Minus
CG30497-PB 1683 CG30497-RB 766..1683 934..17 4540 99.7 Minus
CG30497-PC 1590 CG30497-RC 673..1590 934..17 4540 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG45093-RD 5320 CG45093-RD 1145..2062 934..17 4560 99.8 Minus
CG45093-RC 4324 CG45093-RC 898..1815 934..17 4560 99.8 Minus
CG45093-RB 4996 CG45093-RB 1570..2487 934..17 4560 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7740277..7741194 17..934 4560 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 11:13:35 has no hits.

BS10896.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:53:12 Download gff for BS10896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30497-PA 1717..2634 17..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:18:39 Download gff for BS10896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30497-PC 673..1590 17..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:10:14 Download gff for BS10896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 1570..2487 17..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:22:59 Download gff for BS10896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG45093-RB 1570..2487 17..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:22:59 Download gff for BS10896.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7740277..7741194 17..934 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:10:14 Download gff for BS10896.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3627782..3628699 17..934 99   Plus

BS10896.5prime Sequence

938 bp (846 high quality bases) assembled on 2006-04-19

> BS10896.5prime
GAAGTTATCAGTCGACATGAAACCGGAAAATCGGCATGAGTCGTACAATG
CAAAGTGCGGGACACTAGACGGAGCCGAACCGTTGTATCATCAACAGCGC
AGCAACAGAATGGACGTCTACCAGATCGACGATGGATTCCACTCGGACGG
CGGCACCGAGACTCCGCCGCCGTCACCCAGTTCTGGGTCATCGATCGCCT
CGACCTCGGACCACGGATCGCTGGAGAGCGTGGACACTGGGGGGACGCAG
CGGCTGGCCGTGCTATCGTTCGAGCAGGTGAGCAAACTGCACGACGTCAT
GGACGAGAAGGTGGCCATCCATGGGCGCGGCAATTTTCCCACACTGGAGG
TGAAGCTCAAGGATCTGGTCAACCTGGTGCGCCGCAAGCTGGAGGCGGAG
GTGAACGCCGGCGGCGCCGGGGTGTTAGTTAAGGACATCCGTCTCAATGG
CGGGGCAGCTAGTCATGTTTTAGCCAGCGAGGATCAGCCGTACAATGACC
TGGACCTGATATTCGCCATCGAGCTGAGTTCGCCACGCGTCTTTGACCGC
GTCAAGGTGGCGGTGCTCAACACCCTGCTGGACTTGATGCCCGAGGGCGT
CTGCAAGCGACGCATCTACACGTGCTCCCTGAAGGAGGCCTACGTGGGCA
AGATGGTCAAGGTGAACAACAACAATGACGGCGATCGCTGGTCCCTCATT
TCGCTGGGCAACTCGCCGGGCCACAAGAACGTCGAGCTGAAGTTCGTGGA
CACGATGAGGCGCCAGTTCGAGTTCTCGGTGGACTCGTTCCAGATTGTGC
TGGACTCGCTGCTGCTCTTCTACGACTGCGCCGCTCTGCCCATCTCGGAG
AACTTCTATCCAACGGTGGGTCGGCGATCGGCCTACGGGGACTTCCAGGA
GGCACTCTACCATTTGCAAAAGAAACTGATCTCAACGC

BS10896.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG30497-PB 1683 CG30497-RB 1..853 17..869 4265 100 Plus
CG30497-PA 2634 CG30497-RA 989..1804 54..869 4080 100 Plus
CG30497-PC 1590 CG30497-RC 1..760 110..869 3800 100 Plus
CG30497-PB 1683 CG30497-RB 861..922 877..938 285 98.3 Plus
CG30497-PA 2634 CG30497-RA 1812..1873 877..938 285 98.3 Plus
CG30497-PC 1590 CG30497-RC 768..829 877..938 285 98.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG45093-RB 4996 CG45093-RB 805..1726 17..938 4550 99.7 Plus
CG30497-RB 4996 CG30497-RB 805..1726 17..938 4550 99.7 Plus
CG45093-RD 5320 CG45093-RD 417..1301 54..938 4365 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7741038..7741922 938..54 4320 99.2 Minus
2R 25286936 2R 7758035..7758073 55..17 195 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:24:58 has no hits.

BS10896.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:53:13 Download gff for BS10896.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30497-PB 1..922 17..938 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:18:41 Download gff for BS10896.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30497-PB 1..922 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:31:52 Download gff for BS10896.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 798..1726 9..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:37 Download gff for BS10896.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 798..1726 9..938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:37 Download gff for BS10896.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7741038..7741920 56..938 99 <- Minus
2R 7758035..7758080 9..55 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:31:52 Download gff for BS10896.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3628543..3629425 56..938 99 <- Minus
arm_2R 3645540..3645585 9..55 91   Minus

BS10896.complete Sequence

1715 bp assembled on 2007-10-26

GenBank Submission: FJ638833

> BS10896.complete
GAAGTTATCAGTCGACATGAAACCGGAAAATCGGCATGAGTCGTACAATG
CAAAGTGCGGGACACTAGACGGAGCCGAACCGTTGTATCATCAACAGCGC
AGCAACAGAATGGACGTCTACCAGATCGACGATGGATTCCACTCGGACGG
CGGCACCGAGACTCCGCCGCCGTCACCCAGTTCTGGGTCATCGATCGCCT
CGACCTCGGACCACGGATCGCTGGAGAGCGTGGACACTGGGGGGACGCAG
CGGCTGGCCGTGCTATCGTTCGAGCAGGTGAGCAAACTGCACGACGTCAT
GGACGAGAAGGTGGCCATCCATGGGCGCGGCAATTTTCCCACACTGGAGG
TGAAGCTCAAGGATCTGGTCAACCTGGTGCGCCGCAAGCTGGAGGCGGAG
GTGAACGCCGGCGGCGCCGGGGTGTTAGTTAAGGACATCCGTCTCAATGG
CGGGGCAGCTAGTCATGTTTTAGCCAGCGAGGATCAGCCGTACAATGACC
TGGACCTGATATTCGCCATCGAGCTGAGTTCGCCACGCGTCTTTGACCGC
GTCAAGGTGGCGGTGCTCAACACCCTGCTGGACTTGATGCCCGAGGGCGT
CTGCAAGCGACGCATCTACACGTGCTCCCTGAAGGAGGCCTACGTGGGCA
AGATGGTCAAGGTGAACAACAACAATGACGGCGATCGCTGGTCCCTCATT
TCGCTGGGCAACTCGCCGGGCCACAAGAACGTCGAGCTGAAGTTCGTGGA
CACGATGAGGCGCCAGTTCGAGTTCTCGGTGGACTCGTTCCAGATTGTGC
TGGACTCGCTGCTGCTCTTCTACGACTGCGCCGCTCTGCCCATCTCGGAG
AACTTCTATCCAACGGTGGTCGGCGAATCGGTCTACGGGGACTTCCAGGA
GGCACTCTACCATTTGCAAAAGAAACTGATCTCAACGCGTCAGCCGGAGG
AGATACGAGGCGGCGGCCTGCTCAAGTACTGCAATCTATTGGTGCGTAAC
TACAAGGCCGTCGACTCGCAGCTCATCAAGACCCTGGAGCGCTACATGTG
CTCGCGCTTCTTCATCGATTTCCCGGACATCAATACGCAGACCACCAAGC
TGGAGGCCTACTTGCGTAACCATTTCTGGGGCGTCGATGAGGAACCGCTG
CAGTATCAGTACCTGATGCATTTACGCGAGGTAGTCGAGATGTCGACGGT
CTGTCTAATGGGCCACGAGCGGCGCCAATCGCTCCATCTAATCCAGTCGC
TGGCCGCTCAGGTGCTCTTCAACAAGCAGGAGAAGCAGCAGCAGCAGCAG
GCCCAGGAGAAGTACCAGCAGCAACAGCAGCAGCAGCAGCATCAGCAAAA
TCAGCAGCAGCAGCAGCAGCAGCGTCAGCATCAGTTCCTTGACCCAGCGC
AGCAGCAACAGCAGCAGCAGCAGACACAGACGCAACAGCAGCAGGCGCAG
CAGGCAACTACCCTGACCCTTGTCCCGCAGGCGCCGCCCACGGGCCAGGC
GCAGACCATTTATGTGCAACAGGCCGCCCCAGCCGCCGTGTGCTGCACGA
GCAGCGCGGATCAGACGGCGACAGCGGCACCACAGACCATACAGATACAG
GCCGGTCCGCCGGGACTCATCTATGCCAACGGCGTCTACTATGCACCTGT
GATCCCCAGCACCATCTGCACGTGCAACTCCACCTGGCTGAGCACGTGAA
AGCTTTCTAGACCAT

BS10896.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG30497-RB 1683 CG30497-PB 1..1683 17..1699 8415 100 Plus
CG30497-RA 2634 CG30497-PA 989..2634 54..1699 8230 100 Plus
CG30497-RD 1590 CG30497-PD 1..1590 110..1699 7950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG45093-RB 4996 CG45093-RB 805..2487 17..1699 8415 100 Plus
CG30497-RB 4996 CG30497-RB 805..2487 17..1699 8415 100 Plus
CG45093-RD 5320 CG45093-RD 417..2062 54..1699 8230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7740277..7741922 1699..54 8230 100 Minus
2R 25286936 2R 7758035..7758073 55..17 195 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:40:43 has no hits.

BS10896.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:37 Download gff for BS10896.complete
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 1..1683 17..1699 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:25 Download gff for BS10896.complete
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 637..2326 9..1699 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:12 Download gff for BS10896.complete
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 805..2486 17..1698 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:03 Download gff for BS10896.complete
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 644..2325 17..1698 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:36 Download gff for BS10896.complete
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 805..2486 17..1698 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:36 Download gff for BS10896.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7740278..7741920 56..1698 100 <- Minus
2R 7758035..7758073 17..55 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:12 Download gff for BS10896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3627783..3629425 56..1698 100 <- Minus
arm_2R 3645540..3645578 17..55 100   Minus

BS10896.pep Sequence

Translation from 16 to 1698

> BS10896.pep
MKPENRHESYNAKCGTLDGAEPLYHQQRSNRMDVYQIDDGFHSDGGTETP
PPSPSSGSSIASTSDHGSLESVDTGGTQRLAVLSFEQVSKLHDVMDEKVA
IHGRGNFPTLEVKLKDLVNLVRRKLEAEVNAGGAGVLVKDIRLNGGAASH
VLASEDQPYNDLDLIFAIELSSPRVFDRVKVAVLNTLLDLMPEGVCKRRI
YTCSLKEAYVGKMVKVNNNNDGDRWSLISLGNSPGHKNVELKFVDTMRRQ
FEFSVDSFQIVLDSLLLFYDCAALPISENFYPTVVGESVYGDFQEALYHL
QKKLISTRQPEEIRGGGLLKYCNLLVRNYKAVDSQLIKTLERYMCSRFFI
DFPDINTQTTKLEAYLRNHFWGVDEEPLQYQYLMHLREVVEMSTVCLMGH
ERRQSLHLIQSLAAQVLFNKQEKQQQQQAQEKYQQQQQQQQHQQNQQQQQ
QQRQHQFLDPAQQQQQQQQTQTQQQQAQQATTLTLVPQAPPTGQAQTIYV
QQAAPAAVCCTSSADQTATAAPQTIQIQAGPPGLIYANGVYYAPVIPSTI
CTCNSTWLST*

BS10896.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG30497-PB 560 CG30497-PB 1..560 1..560 2912 100 Plus
CG30497-PA 877 CG30497-PA 330..877 13..560 2841 99.8 Plus
CG30497-PD 529 CG30497-PD 1..529 32..560 2739 100 Plus
CG30497-PC 529 CG30497-PC 1..529 32..560 2739 100 Plus
Cfp1-PB 643 CG17446-PB 527..641 402..502 188 44.4 Plus