Clone BS10915 Report

Search the DGRC for BS10915

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:109
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptNep4-RA
Protein status:BS10915.pep: full length peptide match
Sequenced Size:3155

Clone Sequence Records

BS10915.3prime Sequence

881 bp (827 high quality bases) assembled on 2006-04-19

> BS10915.3prime
ATGGTCTAGAAAGCTTCTACCAAACGCTGCACTTTTTCTGAGGGTTCATC
GGTGAGCCGAGGGGACAATTGAACTCCCGCGCAAAGTCAACGGAGTTCGA
GAGCGTCCCAATCACCCGGAAACGACCTGGACTGTGGATGGCCGTGTTCA
GCTTGTTCCGGATGGCCTCCGGTCGCATCGCTCCGCACCAAACCTGACCG
AAGTTCAGGAAGAACAGCTGCGGCCCTGTCATGTTAAGTCCTGGCAGGAT
CTCGTCCGACACCTCGCTGGGATGCTCCTTTAGCCAGCGCTGATACGCGT
GGAAGGCCTGCCGGAGGCCTCCATTGTCTGCGATATTCTCACCCTGCGTA
CTCTCTCCATTCAGGACGATTCCCACCTCCTCGACGGTATAGTTGCTATA
TTGGGCAATAATGCAGCGGGCGCGCTCGTCGAACCCGCGAATCGAGGAGT
CCGTCCACCACTTATGTATATTGCCGTTGCGATCGAAGAGCCTACCCTTG
TCATCGAAACCGTGGGTCAGTTCGTGGCCAATGACCACACCGATGCCGCC
GAAGTTCAGCGACTTCGGAAAGTGGCGGTGGTAGAAGGGCGGCTGCAGGA
TGCCGGCGGGAAACATGATCTGGTTCTTGTTGCGGCTATAATAGGCATTG
ACGATGGCAGGAGCTGTCTGCCAGTTGGTCTTGTTGACCCTCTCGTGGAG
CTTGGCCTGCTCCGTTTTGGCCGTGTGAAGCAGAACATTCAGAGTGTTCT
CAAAATACTTTTCCGGATAGATTTCTATGCCCGCGTACTTGCTATTTAAC
TCACTGGGATTAAGGATAAAGTCTGGATAGCCGATCTTCAGGGACATGGC
GTTAACCTTTTTCCTCGGCCAACTGCTTTGT

BS10915.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4058-PB 2937 Nep4-RB 2093..2937 861..17 4225 100 Minus
CG4058-PA 3123 Nep4-RA 2279..3123 861..17 4225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
Nep4-RC 3629 CG4058-RC 2460..3323 881..17 4300 99.9 Minus
Nep4-RA 3632 CG4058-RA 2463..3326 881..17 4300 99.9 Minus
Nep4-RB 3331 CG4058-RB 2162..3025 881..17 4300 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20653725..20654264 341..881 2655 99.8 Plus
3R 32079331 3R 20653239..20653565 17..343 1635 100 Plus
X 23542271 X 6102958..6103088 613..483 310 82.4 Minus
Blast to na_te.dros performed on 2015-02-11 11:43:15 has no hits.

BS10915.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:53:39 Download gff for BS10915.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4058-PB 2074..2937 17..881 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:19:19 Download gff for BS10915.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4058-PA 2260..3123 17..881 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:16:06 Download gff for BS10915.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep4-RB 2162..3025 17..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:02:30 Download gff for BS10915.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep4-RB 2162..3025 17..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:02:30 Download gff for BS10915.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20653239..20653564 17..342 100 <- Plus
3R 20653727..20654264 343..881 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:16:06 Download gff for BS10915.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16478961..16479286 17..342 100 <- Plus
arm_3R 16479449..16479986 343..881 99   Plus

BS10915.5prime Sequence

861 bp (754 high quality bases) assembled on 2006-04-19

> BS10915.5prime
GAAGTTATCAGTCGACATGAGTCGCCACAGCCAACTGAAGCTAGCGATGC
CCTCGGTTCACGGAGCTCCAGCCACCGCTCCTGGCTCGCCGATGAACGCC
AAAGCCCGGAGCGTGAAGCTCGGACTGGGTGTTAATCAGCGGACAGGTCG
TGTGCAGTGGTGTCCCGGTCTGACCTGCTGCAAAATGCTTCTACTTCTTC
CAGTGGTAATGCTGCCACTGACCCTGGTGCTCATCCTGATCATGCGGCTG
GACGGGATGCTGGCGGCGCTGCAATTGAACGAACAGAGGATGAGGGATCT
GCGGAACTCTCACAGCGAGGTGCCTGTCTATATGGAGGATTACGAAGCCC
TTTTACCGGAGGGTAGTACCTACAACGACCTGATCAACGAGGAGTTCATA
CTGCCGGCGAGCAAGCGGACCCAACTGCAGATTTTGGCCGCGGAGAGGGC
GCGTCGCTGCCAACCATATCGCTACGGGAACGGGGAGTCCATGGAGTTGG
AGGAGCGCAACACGCTGATGAAGGACTCCCGAACCTCCTTCCTGCCACTG
GGCATTCCGCGAGAGTGCCTCGGCAGCGGCATTGAACTGGACATTAAACC
CATAGATGAGGAGGCCTACCAGAGGCAGAAGAAGCGCTACCAGGACATAG
CTCCGTATTGGCTGGAGAAGATCAGAATACGGGAGCGCCGCGAGGCCGAA
CGTCATGCAGAGGAGGCCAGTGCCGAGATCAGCGAGGCCACCGCCGCTCT
GCAGAGTTTCTGGAACGAGGAAGGCACTCGGGAGGGCATTCGCATGACCC
AGGCCAAAACCATGAAGCGCTACATGGATTACAAAGTGGATCCCTGCGTG
GATTTCTACAA

BS10915.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4058-PA 3123 Nep4-RA 1..845 17..861 4200 99.8 Plus
CG4058-PB 2937 Nep4-RB 2..659 204..861 3265 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
Nep4-RA 3632 CG4058-RA 204..1048 17..861 4210 99.9 Plus
Nep4-RC 3629 CG4058-RC 388..1045 204..861 3275 99.8 Plus
Nep4-RB 3331 CG4058-RB 90..747 204..861 3275 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20655795..20656639 861..17 4210 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 15:09:43 has no hits.

BS10915.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:53:40 Download gff for BS10915.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4058-PA 1..843 17..859 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:19:20 Download gff for BS10915.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4058-PA 1..843 17..859 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:15:12 Download gff for BS10915.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep4-RA 197..1046 8..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:26 Download gff for BS10915.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep4-RA 197..1046 8..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:26 Download gff for BS10915.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20655797..20656646 8..859 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:15:12 Download gff for BS10915.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16481519..16482368 8..859 99   Minus

BS10915.complete Sequence

3155 bp assembled on 2010-05-10

GenBank Submission: KX805102

> BS10915.complete
GAAGTTATCAGTCGACATGAGTCGCCACAGCCAACTGAAGCTAGCGATGC
CCTCGGTTCACGGAGCTCCAGCCACCGCTCCTGGCTCGCCGATGAACGCC
AAAGCCCGGAGCGTGAAGCTCGGACTGGGTGTTAATCAGCGGACAGGTCG
TGTGCAGTGGTGTCCCGGTCTGACCTGCTGCAAAATGCTTCTACTTCTTC
CAGTGGTAATGCTGCCACTGACCCTGGTGCTCATCCTGATCATGCGGCTG
GACGGGATGCTGGCGGCGCTGCAATTGAACGAACAGAGGATGAGGGATCT
GCGGAACTCTCACAGCGAGGTGCCTGTCTATATGGAGGATTACGAAGCCC
TTTTACCGGAGGGTAGTACCTACAACGACCTGATCAACGAGGAGTTCATA
CTGCCGGCGAGCAAGCGGACCCAACTGCAGATTTTGGCCGCGGAGAGGGC
GCGTCGCTGCCAACCATATCGCTACGGGAACGGGGAGTCCATGGAGTTGG
AGGAGCGCAACACGCTGATGAAGGACTCCCGAACCTCCTTCCTGCCACTG
GGCATTCCGCGAGAGTGCCTCGGCAGCGGCATTGAACTGGACATTAAACC
CATAGATGAGGAGGCCTACCAGAGGCAGAAGAAGCGCTACCAGGACATAG
CTCCGTATTGGCTGGAGAAGATCAGAATACGGGAGCGCCGCGAGGCCGAA
CGTCATGCAGAGGAGGCCAGTGCCGAGATCAGCGAGGCCACCGCCGCTCT
GCAGAGTTTCTGGAACGAGGAAGGCACTCGGGAGGGCATTCGCATGACCC
AGGCCAAAACCATGAAGCGCTACATGGATAACAAAGTGGATCCCTGCGTG
GATTTCTACAAGTACGCCTGCGGCAACTGGGAGCGCCTGCATCCAATACC
CAAGGATAAGGCCGGCTTCGATACCTTCGAAATGCTGCGTGAGAGTCTGG
ACCTGGTGCTACGAAATCTTCTGGAGAAAAATACCCCTGTGCACTCCGCA
GCGGAGCTACGAAAAAGTCCCGTGCGGAATACTCTATTTAAGCTTAATGA
GCAGGGCGAGGGTGAGGGCGAAGCTGACCAGGCGGCGGAACTTACGGCGG
AACGCCTGCGTCGGCACATTGTCAGTAAGAGGCAGTTGCTTAACCGCGTT
CTGGTGCGCTACAAGCGGTATACCAACGGAACGAAAAGGAAACGCCTCAT
CGAAACCCCACGGGAGAGAACCAAAGAGGAGGAAGCTGCTCCACCAGTTG
TCCTGCCAAAGGATAAAACCAAGGACAAGTCGGATAACGAAGAGCAACTA
CATGTGCCCACCGATTTCCTAAAGCCCCATCAAGATGCCCAGCTAAAAGC
AAAGAATCTGTACCGGTCCTGCGTGAACAGCGCGGTGCTGGCCAAGCGGG
GATTGGAACCGCTGCACACGCTCATTCGGGAACTAGGTGGCTGGCCAGTC
CTGGAGTCCCAATGGAGTGAGTCCAACTTTAACTGGCAGGTGCTAGCCGC
CACCCTTAGACGTTACAACAACGACATCCTCATCGTCCAGTGGGTGGGGG
CGGACATCAAGAACTCCGAGGAGAACATTGTTCAGTTTGACCAGACGGGT
CTGGGCCTGCCCACCAGGGAGTACTTCCTCCAGCCGAGCAACGCCAAGTA
CCTACAGGCCTACCAGCGCTACATGGCCGAGGTGATGCACAAAATGGGCG
CCTCCAAGGCGGATGCCCAGCGGGTGGCCAGCGAGCTGGTGGCGTTCGAA
ACGCAGCTGGCGGGGATTACAGCTCCAGCGGAGCAACGACTTAACGTCAC
CAAGCTCTACAAGCGCATGACGCTGGACCAACTGCAGGCGGTGGTTCCGG
AAATCAAGTGGCGAGCTTACCTGCAGAGTCTGCAAGATCGCGAAGTTCTG
GGCACCGAGGAAGTGGTCATCTACGCGGTGGAGTACATGAGCAAGCTGGT
GACTCTTCTAGATGAAACGGATCCCCGAACGGTTTCCAATTACATGATGT
GGCGCTTTGTGCGGCACAGGATCAACAACGTGGACGATCGATTCGATGAC
ATCAAACAGAGTTTCTACCACGCCCTCTTTGGCCGCGAGGAGAGTCCGCA
GAGATGGAAGGTATGCATCGCCCAGGTGAACACCAACATGGGCATGGCAG
TGGGTTCCATGTTCGTGAGTCGCTATTTCGACAACAACAGCAAGCGGGAC
ACCTTGCGGATGACTCACGATCTGCAGCAGGCCTTTCGGGATATCCTGAA
AACCACTGATTGGCTGGACGACACCACAAAGCAGTTGGCCGAGGAAAAGG
TTAACGCCATGTCCCTGAAGATCGGCTATCCAGACTTTATCCTTAATCCC
AGTGAGTTAAATAGCAAGTACGCGGGCATAGAAATCTATCCGGAAAAGTA
TTTTGAGAACACTCTGAATGTTCTGCTTCACACGGCCAAAACGGAGCAGG
CCAAGCTCCACGAGAGGGTCAACAAGACCAACTGGCAGACAGCTCCTGCC
ATCGTCAATGCCTATTATAGCCGCAACAAGAACCAGATCATGTTTCCCGC
CGGCATCCTGCAGCCGCCCTTCTACCACCGCCACTTTCCGAAGTCGCTGA
ACTTCGGCGGCATCGGTGTGGTCATTGGCCACGAACTGACCCACGGTTTC
GATGACAAGGGTAGGCTCTTCGATCGCAACGGCAATATACATAAGTGGTG
GACGGACTCCTCGATTCGCGGGTTCGACGAGCGCGCCCGCTGCATTATTG
CCCAATATAGCAACTATACCGTCGAGGAGGTGGGAATCGTCCTGAATGGA
GAGAGTACGCAGGGTGAGAATATCGCAGACAATGGAGGCCTCCGGCAGGC
CTTCCACGCGTATCAGCGCTGGCTAAAGGAGCATCCCAGCGAGGTGTCGG
ACGAGATCCTGCCAGGACTTAACATGACAGGGCCGCAGCTGTTCTTCCTG
AACTTCGGTCAGGTTTGGTGCGGAGCGATGCGACCGGAGGCCATCCGGAA
CAAGCTGAACACGGCCATCCACAGTCCAGGTCGTTTCCGGGTGATTGGGA
CGCTCTCGAACTCCGTTGACTTTGCGCGGGAGTTCAATTGTCCCCTCGGC
TCACCGATGAACCCTCAGAAAAAGTGCAGCGTTTGGTAGAAGCTTTCTAG
ACCAT

BS10915.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
Nep4-RA 3123 CG4058-PA 1..3123 17..3139 15615 100 Plus
Nep4-RC 2937 CG4058-PC 2..2937 204..3139 14680 100 Plus
Nep4-RB 2937 CG4058-PB 2..2937 204..3139 14680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
Nep4-RA 3632 CG4058-RA 204..3326 17..3139 15615 100 Plus
Nep4-RC 3629 CG4058-RC 388..3323 204..3139 14680 100 Plus
Nep4-RB 3331 CG4058-RB 90..3025 204..3139 14680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20654852..20656639 1804..17 8940 100 Minus
3R 32079331 3R 20653725..20654737 2815..1803 5065 100 Minus
3R 32079331 3R 20653239..20653565 3139..2813 1635 100 Minus
X 23542271 X 6102958..6103088 2543..2673 310 82.4 Plus
Blast to na_te.dros performed on 2014-11-28 01:55:39 has no hits.

BS10915.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:32 Download gff for BS10915.complete
Subject Subject Range Query Range Percent Splice Strand
Nep4-RA 202..3324 17..3139 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:07 Download gff for BS10915.complete
Subject Subject Range Query Range Percent Splice Strand
Nep4-RA 204..3326 17..3139 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:36 Download gff for BS10915.complete
Subject Subject Range Query Range Percent Splice Strand
Nep4-RA 204..3326 17..3139 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:36 Download gff for BS10915.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20653239..20653564 2814..3139 100 <- Minus
3R 20653727..20654735 1805..2813 100 <- Minus
3R 20654852..20656639 17..1804 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:07 Download gff for BS10915.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16478961..16479286 2814..3139 100 <- Minus
arm_3R 16479449..16480457 1805..2813 100 <- Minus
arm_3R 16480574..16482361 17..1804 100   Minus

BS10915.pep Sequence

Translation from 16 to 3138

> BS10915.pep
MSRHSQLKLAMPSVHGAPATAPGSPMNAKARSVKLGLGVNQRTGRVQWCP
GLTCCKMLLLLPVVMLPLTLVLILIMRLDGMLAALQLNEQRMRDLRNSHS
EVPVYMEDYEALLPEGSTYNDLINEEFILPASKRTQLQILAAERARRCQP
YRYGNGESMELEERNTLMKDSRTSFLPLGIPRECLGSGIELDIKPIDEEA
YQRQKKRYQDIAPYWLEKIRIRERREAERHAEEASAEISEATAALQSFWN
EEGTREGIRMTQAKTMKRYMDNKVDPCVDFYKYACGNWERLHPIPKDKAG
FDTFEMLRESLDLVLRNLLEKNTPVHSAAELRKSPVRNTLFKLNEQGEGE
GEADQAAELTAERLRRHIVSKRQLLNRVLVRYKRYTNGTKRKRLIETPRE
RTKEEEAAPPVVLPKDKTKDKSDNEEQLHVPTDFLKPHQDAQLKAKNLYR
SCVNSAVLAKRGLEPLHTLIRELGGWPVLESQWSESNFNWQVLAATLRRY
NNDILIVQWVGADIKNSEENIVQFDQTGLGLPTREYFLQPSNAKYLQAYQ
RYMAEVMHKMGASKADAQRVASELVAFETQLAGITAPAEQRLNVTKLYKR
MTLDQLQAVVPEIKWRAYLQSLQDREVLGTEEVVIYAVEYMSKLVTLLDE
TDPRTVSNYMMWRFVRHRINNVDDRFDDIKQSFYHALFGREESPQRWKVC
IAQVNTNMGMAVGSMFVSRYFDNNSKRDTLRMTHDLQQAFRDILKTTDWL
DDTTKQLAEEKVNAMSLKIGYPDFILNPSELNSKYAGIEIYPEKYFENTL
NVLLHTAKTEQAKLHERVNKTNWQTAPAIVNAYYSRNKNQIMFPAGILQP
PFYHRHFPKSLNFGGIGVVIGHELTHGFDDKGRLFDRNGNIHKWWTDSSI
RGFDERARCIIAQYSNYTVEEVGIVLNGESTQGENIADNGGLRQAFHAYQ
RWLKEHPSEVSDEILPGLNMTGPQLFFLNFGQVWCGAMRPEAIRNKLNTA
IHSPGRFRVIGTLSNSVDFAREFNCPLGSPMNPQKKCSVW*

BS10915.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
Nep4-PA 1040 CG4058-PA 1..1040 1..1040 5459 100 Plus
Nep4-PC 978 CG4058-PC 1..978 63..1040 5126 99.9 Plus
Nep4-PB 978 CG4058-PB 1..978 63..1040 5126 99.9 Plus
Nep1-PD 849 CG5905-PD 249..849 441..1040 1450 44.9 Plus
Nep1-PC 849 CG5905-PC 249..849 441..1040 1450 44.9 Plus
Nep1-PD 849 CG5905-PD 158..240 249..321 168 38.6 Plus