Clone BS10942 Report

Search the DGRC for BS10942

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:109
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG3655-RA
Protein status:BS10942.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10942.3prime Sequence

828 bp (817 high quality bases) assembled on 2006-04-19

> BS10942.3prime
ATGGTCTAGAAAGCTTTCACCGCTCCGTGGAGTGGGTGGTGCCCAATCCG
CTGCTGCTGCTCCCAGAACCGGAAGCGGAATTCAATCCTTGGCGGCGGAA
GAAGCCGAGGGTGTCCAGCGCCTTAATAGTGCGTCGGATTAGCTCGTCCT
TGTATTTCCAAATGGTTTTGTCCTCGACTGAATGCTCCCGATACTCCTCA
CAGCTCTTCTTCAGCGTCTTGACGCAGTCCGCCCGATAGTGCTGCAGCTG
GGCGTCCTTGGTGTCCACAGGATACGACTTGCAGACGCCGCCCAAGCAGC
TCAGTGGAAAGTGATTGTGGAGGGTGAGCACGCGCTCCGGATCGTGGAAG
CATTTCACATACTGATTCGGCTTGGTGTAGTTCTTCGCACGATGGACGTG
CTGCAGCATGTGCATGTACTTGGGTATGTCCTTGTGCCAGCCGTGTTCGT
GCTGCTGGTCGTCCAAGAAGTACACGTTGCGGAAGTTGTAGCTGTGGAAT
CCGTCCGGCTTGATCTTGCGCGACTCTGGACGCACTTTGTCCATCAACTC
GGACCATAAAACCGCTCCGCCTTTGGGCATGATCACCTCGTCAATGTCCA
GCAGTGCAATGTAGTCGTACAGATAGAGATTTTTGTACAGACAGTCGTTG
TACGGAATAACCTCGTTCTGGCGCTTGTGGTTCGTCTTCTTAGTTAGGTA
AAGGTGCTGGAATCCCGGCACGTTTGGCTGCCCACCGGGCAATGTCAGCG
GGATCACTTGGACCTTGCCCTCCTGTTCGTAGTGATTAAGCACTTTGGTG
ATGTTGGGATGGACCTGAAGATTGTAGA

BS10942.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3655-PA 1692 CG3655-RA 881..1692 828..17 4010 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3655-RD 4325 CG3655-RD 1917..2728 828..17 4030 99.8 Minus
CG3655-RC 4766 CG3655-RC 2358..3169 828..17 4030 99.8 Minus
CG3655-RB 4995 CG3655-RB 1722..2533 828..17 4030 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1075503..1076303 17..817 3975 99.8 Plus
Blast to na_te.dros performed on 2015-02-06 17:58:44 has no hits.

BS10942.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:54:19 Download gff for BS10942.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-PA 882..1692 17..827 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:20:12 Download gff for BS10942.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-PA 882..1692 17..827 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:36:23 Download gff for BS10942.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 1723..2533 17..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:39:01 Download gff for BS10942.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 1723..2533 17..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:39:01 Download gff for BS10942.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1075503..1076307 17..821 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:36:23 Download gff for BS10942.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 969536..970340 17..821 99   Plus

BS10942.5prime Sequence

899 bp (782 high quality bases) assembled on 2006-04-19

> BS10942.5prime
GAAGTTATCAGTCGACATGGCTCACTCCAAGGTGATCCTTAAGATCCTGT
TTTCGCTGTGCGTCTGGTCCTTCGTCATCATAGGACTGTTCAAGATGCAC
GGTACTAATCTGGTGCCCCAGGAGTACCAGCAGGTGCCACTCAACGGACG
CATCCTGCTGCAGAAAGACATTCGCTATGCGGAAACCACCTCCACGACCA
CGGATCACTTCGATCCCAGCGAGATACTGGTGGACAATCGAACAGCCATG
GACGACGACCAGTTGGTCCGAGACGTGGAGTCCCGCATCCCCTCTCTGCC
GATCGCCTACTGGAGCAAGAATAAGAACTTCCTGCAGCAGAAGTCGTCGA
CCTGCGCGAAGTACCCCTCCATTTTCGAGCTGGAATTCAACAACATCTAC
TGGCAGACGCTGCGCACGTCGAACGGAACGTTCCAGCTTTTTGGGGCTTA
TTACGACATCCGCCGCACCTCGTTGCTGGGACCCACTGTGCGGATCCTTG
GAATGATCGACAGGATTGAGCCCAAGGTGAAGACCTACTGCCAGTTCTGG
TTTGACGGCCAAAAGGAGCCGTTCATCGTGAAAACGTTTGAGTACAAGTA
CATCTGGTACAACAAGTGGGGCAACTACAAGCAGGGCATCTACCAGCCAT
ATCTGATCGCATGCCAGATTCCCAAGCCCTTTCACGGCGTGGTGCCCAGC
TCCGTGTCGATGGTGGAGAAGGAGTGTGATACGGCCACGAACAATCTGCG
GGTCATCTACAACCGACCGCCCGACGACCAGAAGAAGGGATTTGCTGTCT
GCGTCAAGGGATTGGACTTCCTCTACGACGACCTGAGTGTGCGGCTGATT
GAGTGGATCGAAATGCTCAATATCCTTGGGGCGGACAAAATCTACTTCT

BS10942.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3655-PA 1692 CG3655-RA 1..883 17..899 4415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3655-RD 4325 CG3655-RD 1029..1919 9..899 4425 99.8 Plus
CG3655-RC 4766 CG3655-RC 1470..2360 9..899 4425 99.8 Plus
CG3655-RB 4995 CG3655-RB 834..1724 9..899 4425 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1076444..1077100 899..243 3285 100 Minus
X 23542271 X 1077210..1077446 245..9 1155 99.2 Minus
Blast to na_te.dros performed on 2015-02-11 09:47:16 has no hits.

BS10942.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:54:20 Download gff for BS10942.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:20:14 Download gff for BS10942.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:56:41 Download gff for BS10942.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 829..1724 3..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:54 Download gff for BS10942.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 829..1724 3..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:54 Download gff for BS10942.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1076444..1077097 246..899 100 <- Minus
X 1077210..1077451 3..245 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:56:41 Download gff for BS10942.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 970477..971130 246..899 100 <- Minus
arm_X 971243..971484 3..245 98   Minus

BS10942.complete Sequence

1724 bp assembled on 2007-10-31

GenBank Submission: FJ636745

> BS10942.complete
GAAGTTATCAGTCGACATGGCTCACTCCAAGGTGATCCTTAAGATCCTGT
TTTCGCTGTGCGTCTGGTCCTTCGTCATCATAGGACTGTTCAAGATGCAC
GGTACTAATCTGGTGCCCCAGGAGTACCAGCAGGTGCCACTCAACGGACG
CATCCTGCTGCAGAAAGACATTCGCTATGCGGAAACCACCTCCACGACCA
CGGATCACTTCGATCCCAGCGAGATACTGGTGGACAATCGAACAGCCATG
GACGACGACCAGTTGGTCCGAGACGTGGAGTCCCGCATCCCCTCTCTGCC
GATCGCCTACTGGAGCAAGAATAAGAACTTCCTGCAGCAGAAGTCGTCGA
CCTGCGCGAAGTACCCCTCCATTTTCGAGCTGGAATTCAACAACATCTAC
TGGCAGACGCTGCGCACGTCGAACGGAACGTTCCAGCTTTTTGGGGCTTA
TTACGACATCCGCCGCACCTCGTTGCTGGGACCCACTGTGCGGATCCTTG
GAATGATCGACAGGATTGAGCCCAAGGTGAAGACCTACTGCCAGTTCTGG
TTTGACGGCCAAAAGGAGCCGTTCATCGTGAAAACGTTTGAGTACAAGTA
CATCTGGTACAACAAGTGGGGCAACTACAAGCAGGGCATCTACCAGCCAT
ATCTGATCGCATGCCAGATTCCCAAGCCCTTTCACGGCGTGGTGCCCAGC
TCCGTGTCGATGGTGGAGAAGGAGTGTGATACGGCCACGAACAATCTGCG
GGTCATCTACAACCGACCGCCCGACGACCAGAAGAAGGGATTTGCTGTCT
GCGTCAAGGGATTGGACTTCCTCTACGACGACCTGAGTGTGCGGCTGATT
GAGTGGATCGAAATGCTCAATATCCTTGGGGCGGACAAAATCTACTTCTA
CAATCTTCAGGTCCATCCCAACATCACCAAAGTGCTTAATCACTACGAAC
AGGAGGGCAAGGTCCAAGTGATCCCGCTGACATTGCCCGGTGGGCAGCCA
AACGTGCCGGGATTCCAGCACCTTTACCTAACTAAGAAGACGAACCACAA
GCGCCAGAACGAGGTTATTCCGTACAACGACTGTCTGTACAAAAATCTCT
ATCTGTACGACTACATTGCACTGCTGGACATTGACGAGGTGATCATGCCC
AAAGGCGGAGCGGTTTTATGGTCCGAGTTGATGGACAAAGTGCGTCCAGA
GTCGCGCAAGATCAAGCCGGACGGATTCCACAGCTACAACTTCCGCAACG
TGTACTTCTTGGACGACCAGCAGCACGAACACGGCTGGCACAAGGACATA
CCCAAGTACATGCACATGCTGCAGCACGTCCATCGTGCGAAGAACTACAC
CAAGCCGAATCAGTATGTGAAATGCTTCCACGATCCGGAGCGCGTGCTCA
CCCTCCACAATCACTTTCCACTGAGCTGCTTGGGCGGCGTCTGCAAGTCG
TATCCTGTGGACACCAAGGACGCCCAGCTGCAGCACTATCGGGCGGACTG
CGTCAAGACGCTGAAGAAGAGCTGTGAGGAGTATCGGGAGCATTCAGTCG
AGGACAAAACCATTTGGAAATACAAGGACGAGCTAATCCGACGCACTATT
AAGGCGCTGGACACCCTCGGCTTCTTCCGCCGCCAAGGATTGAATTCCGC
TTCCGGTTCTGGGAGCAGCAGCAGCGGATTGGGCACCACCCACTCCACGG
AGCGGTGAAAGCTTTCTAGACCAT

BS10942.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3655-RD 1692 CG3655-PD 1..1692 17..1708 8430 99.9 Plus
CG3655-RC 1791 CG3655-PC 1..1692 17..1708 8430 99.9 Plus
CG3655-RB 1692 CG3655-PB 1..1692 17..1708 8430 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3655-RD 4325 CG3655-RD 1029..2728 9..1708 8440 99.8 Plus
CG3655-RC 4766 CG3655-RC 1470..3169 9..1708 8440 99.8 Plus
CG3655-RB 4995 CG3655-RB 834..2533 9..1708 8440 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1075503..1076303 1708..908 3975 99.8 Minus
X 23542271 X 1076431..1077100 912..243 3350 100 Minus
X 23542271 X 1077210..1077446 245..9 1155 99.2 Minus
Blast to na_te.dros performed on 2014-11-27 14:10:24 has no hits.

BS10942.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:38 Download gff for BS10942.complete
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 1..1692 17..1708 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:27 Download gff for BS10942.complete
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 642..2346 3..1708 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:36 Download gff for BS10942.complete
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 842..2532 17..1707 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:06 Download gff for BS10942.complete
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 655..2345 17..1707 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:02 Download gff for BS10942.complete
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 842..2532 17..1707 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:02 Download gff for BS10942.complete
Subject Subject Range Query Range Percent Splice Strand
X 1075504..1076300 911..1707 99 <- Minus
X 1076433..1077097 246..910 100 <- Minus
X 1077210..1077438 17..245 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:36 Download gff for BS10942.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 969537..970333 911..1707 99 <- Minus
arm_X 970466..971130 246..910 100 <- Minus
arm_X 971243..971471 17..245 100   Minus

BS10942.pep Sequence

Translation from 16 to 1707

> BS10942.pep
MAHSKVILKILFSLCVWSFVIIGLFKMHGTNLVPQEYQQVPLNGRILLQK
DIRYAETTSTTTDHFDPSEILVDNRTAMDDDQLVRDVESRIPSLPIAYWS
KNKNFLQQKSSTCAKYPSIFELEFNNIYWQTLRTSNGTFQLFGAYYDIRR
TSLLGPTVRILGMIDRIEPKVKTYCQFWFDGQKEPFIVKTFEYKYIWYNK
WGNYKQGIYQPYLIACQIPKPFHGVVPSSVSMVEKECDTATNNLRVIYNR
PPDDQKKGFAVCVKGLDFLYDDLSVRLIEWIEMLNILGADKIYFYNLQVH
PNITKVLNHYEQEGKVQVIPLTLPGGQPNVPGFQHLYLTKKTNHKRQNEV
IPYNDCLYKNLYLYDYIALLDIDEVIMPKGGAVLWSELMDKVRPESRKIK
PDGFHSYNFRNVYFLDDQQHEHGWHKDIPKYMHMLQHVHRAKNYTKPNQY
VKCFHDPERVLTLHNHFPLSCLGGVCKSYPVDTKDAQLQHYRADCVKTLK
KSCEEYREHSVEDKTIWKYKDELIRRTIKALDTLGFFRRQGLNSASGSGS
SSSGLGTTHSTER*

BS10942.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3655-PD 563 CG3655-PD 1..563 1..563 3056 100 Plus
CG3655-PC 596 CG3655-PC 1..563 1..563 3056 100 Plus
CG3655-PB 563 CG3655-PB 1..563 1..563 3056 100 Plus
CG3655-PA 563 CG3655-PA 1..563 1..563 3056 100 Plus
CG11384-PA 588 CG11384-PA 68..533 81..523 820 37.6 Plus