Clone BS10949 Report

Search the DGRC for BS10949

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:109
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptNep1-RA
Protein status:BS10949.pep: full length peptide match
Sequenced Size:2582

Clone Sequence Records

BS10949.3prime Sequence

844 bp (764 high quality bases) assembled on 2006-04-19

> BS10949.3prime
ATGGTCTAGAAAGCTTCTACCACACGCTGCACTTTTCCGCCGGATTCATG
GTGCTGCCCAGTGGGCATTTGTAGGCGCTGGCAAAGTCGCGAGAATTCGA
AAGTGGTCCCAGGACACGAACGAATCCGGGCGAGTGGACCGCGGAGCGGA
TCTTGGTCAGAGCGTCCTCCGGCCGCATGGATCCGCACCAGATTTGGGCG
TAGTTGAGAAAGAACAGCTGATCGTGGGTCATGTTCAGGCCGGGCAGCTG
CTGCTCCCGCCCATGTAAGGTCTCCCATTTCTTGTAGGCCCTGAAAGCCT
GTTTTAGACCGCCGTTGTCGGCGATGTTCTCGCCCTGCGTCATCCGTCCG
TCCATGAACATGTCCACCTCGTTAATCTTGTAGCGCGAGTACTGATCGAT
GACGCACTGCGTCCGTTCGCGAAAGGCCTCGATGGTGGCATTGTTCCACC
ACTGCATCATGTTGCCCTCCTTGTCGAACTGCCTGCCCTTGTCGTCGAAT
CCGTGGGTAATCTCGTGGCCAATGACCACTCCGATTCCGCCGTAATTCAA
GGACTTGGGAAAGTGCTGGCTGTAGAATAGCGGCTGCAGGATGCCAGCAG
GAAATACTATATCGTTTTTATTCGGGTTGTAGAAGGCATTCACCACCGCC
GGTTCGGTGGTCCACTTTTCCTTGTCCACCGGCTGGCGAAGAAGTCGCAG
CATCTTCTCCGACTCCCATTGCAGAATGCTAAGGACATTGTTGATGAAGT
TGTCGGGGGACAATTGTTAGATTCACGTACTCCTGCTCCAGCTCGGTGGC
ATTGGTGAGCAGCTCCGGATAACCAATCCGCTCGTTCATCGAGT

BS10949.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5905-PB 2550 Nep1-RB 1809..2550 758..17 3710 100 Minus
CG5905-PA 2550 Nep1-RA 1809..2550 758..17 3710 100 Minus
CG5905-PB 2550 Nep1-RB 1724..1812 844..756 445 100 Minus
CG5905-PA 2550 Nep1-RA 1724..1812 844..756 445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
Nep1-RD 4026 CG5905-RD 2828..3654 844..17 4115 99.9 Minus
Nep1-RC 3557 CG5905-RC 2359..3185 844..17 4115 99.9 Minus
Nep1-RA 3368 CG5905-RA 2170..2996 844..17 4115 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6102953..6103273 609..289 1605 100 Minus
X 23542271 X 6103326..6103599 290..17 1370 100 Minus
X 23542271 X 6102725..6102887 770..607 770 99.4 Minus
X 23542271 X 6102586..6102659 844..771 370 100 Minus
3R 32079331 3R 20653867..20653997 474..604 310 82.4 Plus
Blast to na_te.dros performed on 2015-02-12 10:53:31 has no hits.

BS10949.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:54:27 Download gff for BS10949.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep1-PA 1724..2550 17..844 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:20:25 Download gff for BS10949.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5905-PA 1724..2550 17..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:06:15 Download gff for BS10949.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep1-RA 2170..2996 17..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:33 Download gff for BS10949.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep1-RA 2170..2996 17..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:33 Download gff for BS10949.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6103327..6103599 17..289 100   Minus
X 6102956..6103272 290..606 100 -> Minus
X 6102586..6102659 771..844 100 -> Minus
X 6102725..6102887 607..770 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:06:15 Download gff for BS10949.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5996619..5996692 771..844 100 -> Minus
arm_X 5996758..5996920 607..770 99 -> Minus
arm_X 5996989..5997305 290..606 100 -> Minus
arm_X 5997360..5997632 17..289 100   Minus

BS10949.5prime Sequence

775 bp (765 high quality bases) assembled on 2006-04-19

> BS10949.5prime
GAAGTTATCAGTCGACATGTCGCAGCAACATGAGGCAACAGCGGCGGCCG
CGGAGAAGCCGCTAAATAACGGCTACCTGCAGGCGAATGCGCCGCTGGAG
GAGCTGAGTGCCACGGTGGTGTCGCCACTCCTGGGACAGCAACAGGTGCA
GCACCAGGCGCCACATCAGATGCAGCAGCAACAGCAGCAGCAGCAGCAGA
ACAAGCTGCCCACTGTCGTTTTCCTGGCGCCCGACGGCAGCGGAGGCGTG
GGAATCCAGCGAGGAAATCCAGCGCAGGGCAATCCCGGCATGGTAACGGG
CACCGGCAGCCACAGCGACTGGCTGCTCAAGGAGTCGCAGCAGCGGCGCC
GCCTGCTCGTCCTGGCCATCGCCTTTACCGTTCTGGGCGCGGCCATCGGG
GCACTGGCCATCTACTTCGCCAGCGTCCATCAGCGTTGCCATCTGTATCG
CCTGGAGCCAGACAACGATGACAGACCGAACGGCAGGTGGAACCAGGATT
CGGGATCCGCCCACGAGGGGCAGGATAACATTTGCATGACCCAGGAGTGC
GTGAGAACAGCCGCCTCCCTGCTCTCGGCCATGGACCTCAACTCCGATCC
CTGCGAGGACTTTTTCCAGTACGCGTGCGGCACCTGGAACAAGATGCATC
CCATTCCCGAGGACCGCAGCTCCATCAGCACGTTTGAGGTCCTGTCCGAT
CAGCAGCAGGTTATCCTGCGCGCAGTTCTGGAGGAACCCATCGATGAACG
CGACAACAAAGCCACCATAAAGGCC

BS10949.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5905-PB 2550 Nep1-RB 1..759 17..775 3770 99.8 Plus
CG5905-PA 2550 Nep1-RA 1..759 17..775 3770 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Nep1-RD 4026 CG5905-RD 1105..1863 17..775 3780 99.9 Plus
Nep1-RC 3557 CG5905-RC 636..1394 17..775 3780 99.9 Plus
Nep1-RA 3368 CG5905-RA 447..1205 17..775 3780 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6096209..6096653 17..461 2225 100 Plus
X 23542271 X 6101236..6101368 558..690 650 99.2 Plus
X 23542271 X 6099578..6099679 459..560 510 100 Plus
X 23542271 X 6101437..6101525 687..775 445 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:57:09 has no hits.

BS10949.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:54:28 Download gff for BS10949.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep1-PA 1..759 17..775 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:20:26 Download gff for BS10949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5905-PA 1..759 17..775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:18:19 Download gff for BS10949.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep1-RA 437..1205 7..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:03:25 Download gff for BS10949.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep1-RA 437..1205 7..775 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:03:25 Download gff for BS10949.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6096199..6096653 7..461 99 -> Plus
X 6099581..6099679 462..560 100 -> Plus
X 6101239..6101366 561..688 99 -> Plus
X 6101439..6101525 689..775 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:18:19 Download gff for BS10949.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5990232..5990686 7..461 99 -> Plus
arm_X 5993614..5993712 462..560 100 -> Plus
arm_X 5995272..5995399 561..688 99 -> Plus
arm_X 5995472..5995558 689..775 100   Plus

BS10949.complete Sequence

2582 bp assembled on 2010-05-10

GenBank Submission: KX802507

> BS10949.complete
GAAGTTATCAGTCGACATGTCGCAGCAACATGAGGCAACAGCGGCGGCCG
CGGAGAAGCCGCTAAATAACGGCTACCTGCAGGCGAATGCGCCGCTGGAG
GAGCTGAGTGCCACGGTGGTGTCGCCACTCCTGGGACAGCAACAGGTGCA
GCACCAGGCGCCACATCAGATGCAGCAGCAACAGCAGCAGCAGCAGCAGA
ACAAGCTGCCCACTGTCGTTTTCCTGGCGCCCGACGGCAGCGGAGGCGTG
GGAATCCAGCGAGGAAATCCAGCGCAGGGCAATCCCGGCATGGTAACGGG
CACCGGCAGCCACAGCGACTGGCTGCTCAAGGAGTCGCAGCAGCGGCGCC
GCCTGCTCGTCCTGGCCATCGCCTTTACCGTTCTGGGCGCGGCCATCGGG
GCACTGGCCATCTACTTCGCCAGCGTCCATCAGCGTTGCCATCTGTATCG
CCTGGAGCCAGACAACGATGACAGACCGAACGGCAGGTGGAACCAGGATT
CGGGATCCGCCCACGAGGGGCAGGATAACATTTGCATGACCCAGGAGTGC
GTGAGAACAGCCGCCTCCCTGCTCTCGGCCATGGACCTCAACTCCGATCC
CTGCGAGGACTTTTTCCAGTACGCGTGCGGCACCTGGAACAAGATGCATC
CCATTCCCGAGGACCGCAGCTCCATCAGCACGTTTGAGGTCCTGTCCGAT
CAGCAGCAGGTTATCCTGCGCGCAGTTCTGGAGGAACCCATCGATGAACG
CGACAACAAAGCCACCATAAAGGCCAAAACCTTCTTCAAGAGCTGCATGG
ATATTCCTCAAATCCGCAAAATCGGAACGGGTCGACTCAAGCAGGTACTG
CAATCCCTGGGCGGCTGGCCGGTCATCGAGCGGAACTGGAGTCCGCCGGC
GGATCTCTCCGTGGAGCGGCTAATGGGTCAGCTCCGACTGAACTACAGCG
AGCCGGTGATGATCGAGCTGTACGTGGGCGCCGACGACAAGAACAGCTCG
GTGAACATCCTGCAGATGGACCAGCTGCAGTATGCCCTGCCCTCGAGGGA
CTACTACCTGAAGGAGAGCAGTGCGAACGACCGAAGGGCCTACCATCGGT
ATATGACACAGGTGGCGCTGCTCCTGGGAGCGGATCCGGCCACCGCCGCC
GCGGAACTGGAGAAAGTTGTGCTCTTCGAGACGCAGCTAGTGAATGTTTC
CTTGCCGGAGGCGGATCGTCATGACACTAGCCTGGTCTATCGTAAGATGT
TGCTGCCCGAGCTGCAGGAACTGGTGCCCGAGGTGCAGTGGCAGGAGTAT
CTACAGGCAGCTCTGGGTCCGGGGATTCCCCTGCAGGAGGACGAGCCGCT
GGTCACCTACGGGCTGCACTATCTCACCGAAATGGGCAAGATACTGGCGC
ACACCGATCGCCGTGTGGTGCACAACTATATGCTGTGGCGCCTGGTCATG
TCCTTGATGTCACACATGATCGATGAGTATCAGCGTGAGCGGGTGGAGTT
CCGCAAGATCCTAATGGGCATCCAGTCGGAGAGGACACGCTGGTCACAGT
GCGTCGAGTGGACTAACAAGAAGCTGGGTGTCGCCGTGGGAGCCCTCTTC
ATCCGGGACAACTTCAATCAGGAGAGCAAGGAGGTGGCCCTCGAGATGAT
CCACACTATACGTGCGGCGTTCAACGAGCTTCTGGCCGAGAACGATTGGA
TGGACGACGAGACGCGGGCGGTGGCCAAGGAGAAGGCGGACTCGATGAAC
GAGCGGATTGGTTATCCGGAGCTGCTCACCAATGCCACCGAGCTGGAGCA
GGAGTACGTGAATCTAACAATTGTCCCCGACAACTTCATCAACAATGTCC
TTAGCATTCTGCAATGGGAGTCGGAGAAGATGCTGCGACTTCTTCGCCAG
CCGGTGGACAAGGAAAAGTGGACCACCGAACCGGCGGTGGTGAATGCCTT
CTACAACCCGAATAAAAACGATATAGTATTTCCTGCTGGCATCCTGCAGC
CGCTATTCTACAGCCAGCACTTTCCCAAGTCCTTGAATTACGGCGGAATC
GGAGTGGTCATTGGCCACGAGATTACCCACGGATTCGACGACAAGGGCAG
GCAGTTCGACAAGGAGGGCAACATGATGCAGTGGTGGAACAATGCCACCA
TCGAGGCCTTTCGCGAACGGACGCAGTGCGTCATCGATCAGTACTCGCGC
TACAAGATTAACGAGGTGGACATGTTCATGGACGGACGGATGACGCAGGG
CGAGAACATCGCCGACAACGGCGGTCTAAAACAGGCTTTCAGGGCCTACA
AGAAATGGGAGACCTTACATGGGCGGGAGCAGCAGCTGCCCGGCCTGAAC
ATGACCCACGATCAGCTGTTCTTTCTCAACTACGCCCAAATCTGGTGCGG
ATCCATGCGGCCGGAGGACGCTCTGACCAAGATCCGCTCCGCGGTCCACT
CGCCCGGATTCGTTCGTGTCCTGGGACCACTTTCGAATTCTCGCGACTTT
GCCAGCGCCTACAAATGCCCACTGGGCAGCACCATGAATCCGGCGGAAAA
GTGCAGCGTGTGGTAGAAGCTTTCTAGACCAT

BS10949.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
Nep1-RD 2550 CG5905-PD 1..2550 17..2566 12735 100 Plus
Nep1-RC 2550 CG5905-PC 1..2550 17..2566 12735 100 Plus
Nep1-RA 2550 CG5905-PA 1..2550 17..2566 12735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
Nep1-RD 4026 CG5905-RD 1105..3654 17..2566 12735 100 Plus
Nep1-RC 3557 CG5905-RC 636..3185 17..2566 12735 100 Plus
Nep1-RA 3368 CG5905-RA 447..2996 17..2566 12735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6101653..6102659 807..1813 5035 100 Plus
X 23542271 X 6096209..6096653 17..461 2225 100 Plus
X 23542271 X 6102953..6103273 1974..2294 1605 100 Plus
X 23542271 X 6103326..6103599 2293..2566 1370 100 Plus
X 23542271 X 6102725..6102887 1814..1976 815 100 Plus
X 23542271 X 6101236..6101368 558..690 650 99.2 Plus
X 23542271 X 6101437..6101556 687..806 600 100 Plus
X 23542271 X 6099578..6099679 459..560 510 100 Plus
3R 32079331 3R 20653867..20653997 2109..1979 310 82.4 Minus
Blast to na_te.dros performed on 2014-11-28 01:55:44 has no hits.

BS10949.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:33 Download gff for BS10949.complete
Subject Subject Range Query Range Percent Splice Strand
Nep1-RA 447..2996 17..2566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:08 Download gff for BS10949.complete
Subject Subject Range Query Range Percent Splice Strand
Nep1-RA 447..2996 17..2566 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:38 Download gff for BS10949.complete
Subject Subject Range Query Range Percent Splice Strand
Nep1-RA 447..2996 17..2566 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:38 Download gff for BS10949.complete
Subject Subject Range Query Range Percent Splice Strand
X 6102956..6103272 1977..2293 100 -> Plus
X 6096209..6096653 17..461 100 -> Plus
X 6099581..6099679 462..560 100 -> Plus
X 6101239..6101366 561..688 99 -> Plus
X 6101439..6101556 689..806 100 -> Plus
X 6101653..6102659 807..1813 100 -> Plus
X 6102725..6102887 1814..1976 100 -> Plus
X 6103327..6103599 2294..2566 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:08 Download gff for BS10949.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5996989..5997305 1977..2293 100 -> Plus
arm_X 5990242..5990686 17..461 100 -> Plus
arm_X 5993614..5993712 462..560 100 -> Plus
arm_X 5995272..5995399 561..688 99 -> Plus
arm_X 5995472..5995589 689..806 100 -> Plus
arm_X 5995686..5996692 807..1813 100 -> Plus
arm_X 5996758..5996920 1814..1976 100 -> Plus
arm_X 5997360..5997632 2294..2566 100   Plus

BS10949.pep Sequence

Translation from 16 to 2565

> BS10949.pep
MSQQHEATAAAAEKPLNNGYLQANAPLEELSATVVSPLLGQQQVQHQAPH
QMQQQQQQQQQNKLPTVVFLAPDGSGGVGIQRGNPAQGNPGMVTGTGSHS
DWLLKESQQRRRLLVLAIAFTVLGAAIGALAIYFASVHQRCHLYRLEPDN
DDRPNGRWNQDSGSAHEGQDNICMTQECVRTAASLLSAMDLNSDPCEDFF
QYACGTWNKMHPIPEDRSSISTFEVLSDQQQVILRAVLEEPIDERDNKAT
IKAKTFFKSCMDIPQIRKIGTGRLKQVLQSLGGWPVIERNWSPPADLSVE
RLMGQLRLNYSEPVMIELYVGADDKNSSVNILQMDQLQYALPSRDYYLKE
SSANDRRAYHRYMTQVALLLGADPATAAAELEKVVLFETQLVNVSLPEAD
RHDTSLVYRKMLLPELQELVPEVQWQEYLQAALGPGIPLQEDEPLVTYGL
HYLTEMGKILAHTDRRVVHNYMLWRLVMSLMSHMIDEYQRERVEFRKILM
GIQSERTRWSQCVEWTNKKLGVAVGALFIRDNFNQESKEVALEMIHTIRA
AFNELLAENDWMDDETRAVAKEKADSMNERIGYPELLTNATELEQEYVNL
TIVPDNFINNVLSILQWESEKMLRLLRQPVDKEKWTTEPAVVNAFYNPNK
NDIVFPAGILQPLFYSQHFPKSLNYGGIGVVIGHEITHGFDDKGRQFDKE
GNMMQWWNNATIEAFRERTQCVIDQYSRYKINEVDMFMDGRMTQGENIAD
NGGLKQAFRAYKKWETLHGREQQLPGLNMTHDQLFFLNYAQIWCGSMRPE
DALTKIRSAVHSPGFVRVLGPLSNSRDFASAYKCPLGSTMNPAEKCSVW*

BS10949.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
Nep1-PD 849 CG5905-PD 1..849 1..849 4468 100 Plus
Nep1-PC 849 CG5905-PC 1..849 1..849 4468 100 Plus
Nep1-PA 849 CG5905-PA 1..849 1..849 4468 100 Plus
Nep1-PB 849 CG5905-PB 1..849 1..849 4468 100 Plus
Nep4-PC 978 CG4058-PC 379..978 249..849 1450 44.9 Plus