Clone BS10961 Report

Search the DGRC for BS10961

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:109
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptSesn-RA
Protein status:BS10961.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10961.3prime Sequence

887 bp (817 high quality bases) assembled on 2006-04-19

> BS10961.3prime
ATGGTCTAGAAAGCTTTCAAGTCATATAGCGCATTATCTCGCGCAGAGCA
TAGAGTAACTCGGCCTGATTACGGGCTTCCATTATCATCAGATTCACATG
AACCTTTTCACTGTCCTGCAGCTCGACCAGCACACTATCGTAGTCCTTGG
TGGTGATTCGCTCGGGGAAGCAGCAGGCTGTCTTAATAAACATTTTCAGG
GGACGCACCAGGAGCTGGTTCACTTCGCCATAGTCGTAGTCGTCGTGGCG
AATGCCGTAGATGCACTGGATGTAGTTCCAAATGGCCCGCCGGAACTTGG
ACGTGTCCACATTCTTGATGCCGCCCATGGTGCAGTAGGTGAGATTGTAG
GCCGCCCGAAACTTGGCGTCCAAGAAGATGCCCACATCGTTGTACAATCC
GTCCACTAGCGAGTAGCCGTGATCCTCCCAAGAGTAGTCCTGGATGCGAA
ACGTGTTGATGCTCTCGGTGCCGCGCCGGGCAAAGTCCTGGTAAATGAAG
TTGGCATCGTCCACGTAGTGCGACAGGTTGGTGGGCACGCCCACAGCCGC
CTCCGGAGTCACGGCCGCCAGCTCCGCCGTCTGCTGCTCCACCTTCTGGA
AGCGGCTGCTCAGCTCCGCCTCGCTGCACTCGTCCTGCTTCTGGGACAGG
ACCTTCATGCGCTCCATTAGCGTCTCCACACTGATGCCGTGCTGCTGCGG
CAGCTGCTGCGCCGTGGCCAAATATCCGTTAAGGGTCGTTGCATCGGGTC
CATCCGCAACCGCATTTGCCGAGTCCGGTGGAGCTCCTCCATTACTGCTC
GCTGCGGTCTGGCTGTCGTAATCCGGATTTGCATTGTTGAGCGAGATCTC
CGCCAGCACTGGCTTCCCCTTCTGCGGCTCCGTCGGG

BS10961.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11299-PA 1494 CG11299-RA 625..1494 886..17 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
Sesn-RD 2431 CG11299-RD 1027..1896 886..17 4350 100 Minus
Sesn-RC 4745 CG11299-RC 1678..2547 886..17 4350 100 Minus
Sesn-RB 3053 CG11299-RB 1649..2518 886..17 4350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23731652..23731971 718..399 1600 100 Minus
2R 25286936 2R 23732036..23732220 399..215 925 100 Minus
2R 25286936 2R 23731361..23731529 886..718 845 100 Minus
2R 25286936 2R 23732389..23732505 218..102 585 100 Minus
2R 25286936 2R 23732560..23732648 105..17 445 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:24:18 has no hits.

BS10961.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:54:53 Download gff for BS10961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11299-PA 623..1494 17..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:02 Download gff for BS10961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11299-PA 623..1494 17..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 16:00:52 Download gff for BS10961.3prime
Subject Subject Range Query Range Percent Splice Strand
Sesn-RB 1647..2521 12..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:17 Download gff for BS10961.3prime
Subject Subject Range Query Range Percent Splice Strand
Sesn-RB 1647..2521 12..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:17 Download gff for BS10961.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23731359..23731529 718..887 99 -> Minus
2R 23731653..23731971 399..717 100 -> Minus
2R 23732037..23732220 215..398 100 -> Minus
2R 23732393..23732503 104..214 100 -> Minus
2R 23732562..23732651 12..103 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 16:00:52 Download gff for BS10961.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19618882..19619052 718..887 99 -> Minus
arm_2R 19619176..19619494 399..717 100 -> Minus
arm_2R 19619560..19619743 215..398 100 -> Minus
arm_2R 19619916..19620026 104..214 100 -> Minus
arm_2R 19620085..19620174 12..103 96   Minus

BS10961.5prime Sequence

831 bp (776 high quality bases) assembled on 2006-04-19

> BS10961.5prime
GAAGTTATCAGTCGACATGTACTACGCCGTCGATTACTACGCGGATATGG
GACAAATCTCTCAAGATTGTTTCGCTGCAACGCAAACTGGAGCATCCGAC
TTTGACATGGACGAGCTCGATGACCTGGACCAGGTGACCCAAGTGATTGG
ATATCATCCCCAGTTCCACGATCACTTCCTGGCCACCCAGAACTTCATTA
TGAAGGGCGATGGTCCGCTGCCTAACGATTACAGATACTACTTGGCCATA
ATTGCTGCTGCCCGCCATCAGTGTCCGTATCTGGTGAAGCGCTACGAGAA
GGAGTTCATCAACCAGGGCGGCGATAGTGCCTGGCTGGGCGGCCTGGACT
TTATACCCGCCAAACTACGTGCCATATACGATATCAATAAAATATTAGCC
CATCGGCCCTGGCTGCTGCGCAAGGAGCATATCGAGCGGCTCACCAAGGG
GAAGAACAGCTGGTCGCTGTCGGAGGTGGTGCACGCCATGGTCCTGCTCT
CGCACTTCCACTCGCTGTCCTCCTTTGTGTTCTCCTGCGGCCTCACACAA
AAGCTGGACGGGCTGTCCAGTCCCAAGCTGAAGAGTCCGCCCGCAGCAGT
GGCGGCCCTCGCACCCACCATTCTCATCACTCCCACCTCGCCGACGGAGC
CGCAGAAGGGGAAGCCAGTGCTGGCGGAGATCTCGCTCAACAATGCAAAT
CCGGATTACGACAGCCAGACCGCAGCGAGCAGTAATGGAGGAGCTCCACC
GGACTCGGCAAATGCGGTTGCGGATGGACCCGATGCAACGACCCTTAACG
GATATTTGGCCACGGCGCAGCAGCTGCCGCA

BS10961.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11299-PA 1494 CG11299-RA 1..815 17..831 4075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
Sesn-RC 4745 CG11299-RC 1053..1868 16..831 4080 100 Plus
Sesn-RB 3053 CG11299-RB 1024..1839 16..831 4080 100 Plus
Sesn-RA 3097 CG11299-RA 1068..1883 16..831 4080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23731155..23731529 435..809 1875 100 Plus
2R 25286936 2R 23729049..23729235 68..254 935 100 Plus
2R 25286936 2R 23730909..23731091 254..436 915 100 Plus
2R 25286936 2R 23722824..23722875 16..67 260 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:04:46 has no hits.

BS10961.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:54:54 Download gff for BS10961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11299-PA 1..814 17..830 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:04 Download gff for BS10961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11299-PA 1..814 17..830 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:54:13 Download gff for BS10961.5prime
Subject Subject Range Query Range Percent Splice Strand
Sesn-RA 1062..1882 9..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:09 Download gff for BS10961.5prime
Subject Subject Range Query Range Percent Splice Strand
Sesn-RA 1062..1882 9..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:09 Download gff for BS10961.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23730909..23731091 254..436 100 -> Plus
2R 23729049..23729234 68..253 100 -> Plus
2R 23731653..23731673 810..830 100   Plus
2R 23731157..23731529 437..809 100 -> Plus
2R 23722818..23722875 9..67 94 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:54:13 Download gff for BS10961.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19610341..19610398 9..67 94 -> Plus
arm_2R 19616572..19616757 68..253 100 -> Plus
arm_2R 19618432..19618614 254..436 100 -> Plus
arm_2R 19618680..19619052 437..809 100 -> Plus
arm_2R 19619176..19619196 810..830 100   Plus

BS10961.complete Sequence

1526 bp assembled on 2006-11-01

GenBank Submission: FJ636746

> BS10961.complete
GAAGTTATCAGTCGACATGTACTACGCCGTCGATTACTACGCGGATATGG
GACAAATCTCTCAAGATTGTTTCGCTGCAACGCAAACTGGAGCATCCGAC
TTTGACATGGACGAGCTCGATGACCTGGACCAGGTGACCCAAGTGATTGG
ATATCATCCCCAGTTCCACGATCACTTCCTGGCCACCCAGAACTTCATTA
TGAAGGGCGATGGTCCGCTGCCTAACGATTACAGATACTACTTGGCCATA
ATTGCTGCTGCCCGCCATCAGTGTCCGTATCTGGTGAAGCGCTACGAGAA
GGAGTTCATCAACCAGGGCGGCGATAGTGCCTGGCTGGGCGGCCTGGACT
TTATACCCGCCAAACTACGTGCCATATACGATATCAATAAAATATTAGCC
CATCGGCCCTGGCTGCTGCGCAAGGAGCATATCGAGCGGCTCACCAAGGG
GAAGAACAGCTGGTCGCTGTCGGAGGTGGTGCACGCCATGGTCCTGCTCT
CGCACTTCCACTCGCTGTCCTCCTTTGTGTTCTCCTGCGGCCTCACACAA
AAGCTGGACGGGCTGTCCAGTCCCAAGCTGAAGAGTCCGCCCGCAGCAGT
GGCGGCCCTCGCACCCACCATTCTCATCACTCCCACCTCGCCGACGGAGC
CGCAGAAGGGGAAGCCAGTGCTGGCGGAGATCTCGCTCAACAATGCAAAT
CCGGATTACGACAGCCAGACCGCAGCGAGCAGTAATGGAGGAGCTCCACC
GGACTCGGCAAATGCGGTTGCGGATGGACCCGATGCAACGACCCTTAACG
GATATTTGGCCACGGCGCAGCAGCTGCCGCAGCAGCACGGCATCAGTGTG
GAGACGCTAATGGAGCGCATGAAGGTCCTGTCCCAGAAGCAGGACGAGTG
CAGCGAGGCGGAGCTGAGCAGCCGCTTCCAGAAGGTGGAGCAGCAGACGG
CGGAGCTGGCGGCCGTGACTCCGGAGGCGGCTGTGGGCGTGCCCACCAAC
CTGTCGCACTACGTGGACGATGCCAACTTCATTTACCAGGACTTTGCCCG
GCGCGGCACCGAGAGCATCAACACGTTTCGCATCCAGGACTACTCTTGGG
AGGATCACGGCTACTCGCTAGTGGACGGATTGTACAACGATGTGGGCATC
TTCTTGGACGCCAAGTTTCGGGCGGCCTACAATCTCACCTACTGCACCAT
GGGCGGCATCAAGAATGTGGACACGTCCAAGTTCCGGCGGGCCATTTGGA
ACTACATCCAGTGCATCTACGGCATTCGCCACGACGACTACGACTATGGC
GAAGTGAACCAGCTCCTGGTGCGTCCCCTGAAAATGTTTATTAAGACAGC
CTGCTGCTTCCCCGAGCGAATCACCACCAAGGACTACGATAGTGTGCTGG
TCGAGCTGCAGGACAGTGAAAAGGTTCATGTGAATCTGATGATAATGGAA
GCCCGTAATCAGGCCGAGTTACTCTATGCTCTGCGCGAGATAATGCGCTA
TATGACTTGAAAGCTTTCTAGACCAT

BS10961.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Sesn-RC 1494 CG11299-PC 1..1494 17..1510 7470 100 Plus
Sesn-RB 1494 CG11299-PB 1..1494 17..1510 7470 100 Plus
Sesn-RA 1494 CG11299-PA 1..1494 17..1510 7470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Sesn-RC 4745 CG11299-RC 1053..2547 16..1510 7475 100 Plus
Sesn-RB 3053 CG11299-RB 1024..2518 16..1510 7475 100 Plus
Sesn-RA 3097 CG11299-RA 1068..2562 16..1510 7475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23731155..23731529 435..809 1875 100 Plus
2R 25286936 2R 23731652..23731971 809..1128 1600 100 Plus
2R 25286936 2R 23729049..23729235 68..254 935 100 Plus
2R 25286936 2R 23732036..23732220 1128..1312 925 100 Plus
2R 25286936 2R 23730909..23731091 254..436 915 100 Plus
2R 25286936 2R 23732389..23732505 1309..1425 585 100 Plus
2R 25286936 2R 23732560..23732648 1422..1510 445 100 Plus
2R 25286936 2R 23722824..23722875 16..67 260 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:41:27 has no hits.

BS10961.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:49 Download gff for BS10961.complete
Subject Subject Range Query Range Percent Splice Strand
CG11299-RC 1..1494 17..1510 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:16 Download gff for BS10961.complete
Subject Subject Range Query Range Percent Splice Strand
CG11299-RC 1045..2548 9..1515 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:08 Download gff for BS10961.complete
Subject Subject Range Query Range Percent Splice Strand
Sesn-RA 1069..2561 17..1509 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:49 Download gff for BS10961.complete
Subject Subject Range Query Range Percent Splice Strand
CG11299-RC 1045..2548 9..1515 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:27 Download gff for BS10961.complete
Subject Subject Range Query Range Percent Splice Strand
Sesn-RA 1069..2561 17..1509 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:27 Download gff for BS10961.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23732562..23732647 1424..1509 100   Plus
2R 23732393..23732503 1313..1423 100 -> Plus
2R 23722825..23722875 17..67 100 -> Plus
2R 23729049..23729234 68..253 100 -> Plus
2R 23730909..23731091 254..436 100 -> Plus
2R 23731157..23731529 437..809 100 -> Plus
2R 23731653..23731971 810..1128 100 -> Plus
2R 23732037..23732220 1129..1312 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:08 Download gff for BS10961.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19610348..19610398 17..67 100 -> Plus
arm_2R 19616572..19616757 68..253 100 -> Plus
arm_2R 19618432..19618614 254..436 100 -> Plus
arm_2R 19619560..19619743 1129..1312 100 -> Plus
arm_2R 19619916..19620026 1313..1423 100 -> Plus
arm_2R 19618680..19619052 437..809 100 -> Plus
arm_2R 19619176..19619494 810..1128 100 -> Plus
arm_2R 19620085..19620170 1424..1509 100   Plus

BS10961.pep Sequence

Translation from 16 to 1509

> BS10961.pep
MYYAVDYYADMGQISQDCFAATQTGASDFDMDELDDLDQVTQVIGYHPQF
HDHFLATQNFIMKGDGPLPNDYRYYLAIIAAARHQCPYLVKRYEKEFINQ
GGDSAWLGGLDFIPAKLRAIYDINKILAHRPWLLRKEHIERLTKGKNSWS
LSEVVHAMVLLSHFHSLSSFVFSCGLTQKLDGLSSPKLKSPPAAVAALAP
TILITPTSPTEPQKGKPVLAEISLNNANPDYDSQTAASSNGGAPPDSANA
VADGPDATTLNGYLATAQQLPQQHGISVETLMERMKVLSQKQDECSEAEL
SSRFQKVEQQTAELAAVTPEAAVGVPTNLSHYVDDANFIYQDFARRGTES
INTFRIQDYSWEDHGYSLVDGLYNDVGIFLDAKFRAAYNLTYCTMGGIKN
VDTSKFRRAIWNYIQCIYGIRHDDYDYGEVNQLLVRPLKMFIKTACCFPE
RITTKDYDSVLVELQDSEKVHVNLMIMEARNQAELLYALREIMRYMT*

BS10961.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Sesn-PC 497 CG11299-PC 1..497 1..497 2613 100 Plus
Sesn-PB 497 CG11299-PB 1..497 1..497 2613 100 Plus
Sesn-PA 497 CG11299-PA 1..497 1..497 2613 100 Plus
Sesn-PD 467 CG11299-PD 1..467 31..497 2451 100 Plus