Clone Sequence Records
BS10961.3prime Sequence
887 bp (817 high quality bases) assembled on 2006-04-19
> BS10961.3prime
ATGGTCTAGAAAGCTTTCAAGTCATATAGCGCATTATCTCGCGCAGAGCA
TAGAGTAACTCGGCCTGATTACGGGCTTCCATTATCATCAGATTCACATG
AACCTTTTCACTGTCCTGCAGCTCGACCAGCACACTATCGTAGTCCTTGG
TGGTGATTCGCTCGGGGAAGCAGCAGGCTGTCTTAATAAACATTTTCAGG
GGACGCACCAGGAGCTGGTTCACTTCGCCATAGTCGTAGTCGTCGTGGCG
AATGCCGTAGATGCACTGGATGTAGTTCCAAATGGCCCGCCGGAACTTGG
ACGTGTCCACATTCTTGATGCCGCCCATGGTGCAGTAGGTGAGATTGTAG
GCCGCCCGAAACTTGGCGTCCAAGAAGATGCCCACATCGTTGTACAATCC
GTCCACTAGCGAGTAGCCGTGATCCTCCCAAGAGTAGTCCTGGATGCGAA
ACGTGTTGATGCTCTCGGTGCCGCGCCGGGCAAAGTCCTGGTAAATGAAG
TTGGCATCGTCCACGTAGTGCGACAGGTTGGTGGGCACGCCCACAGCCGC
CTCCGGAGTCACGGCCGCCAGCTCCGCCGTCTGCTGCTCCACCTTCTGGA
AGCGGCTGCTCAGCTCCGCCTCGCTGCACTCGTCCTGCTTCTGGGACAGG
ACCTTCATGCGCTCCATTAGCGTCTCCACACTGATGCCGTGCTGCTGCGG
CAGCTGCTGCGCCGTGGCCAAATATCCGTTAAGGGTCGTTGCATCGGGTC
CATCCGCAACCGCATTTGCCGAGTCCGGTGGAGCTCCTCCATTACTGCTC
GCTGCGGTCTGGCTGTCGTAATCCGGATTTGCATTGTTGAGCGAGATCTC
CGCCAGCACTGGCTTCCCCTTCTGCGGCTCCGTCGGG
BS10961.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11299-PA | 1494 | CG11299-RA | 625..1494 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sesn-RD | 2431 | CG11299-RD | 1027..1896 | 886..17 | 4350 | 100 | Minus |
Sesn-RC | 4745 | CG11299-RC | 1678..2547 | 886..17 | 4350 | 100 | Minus |
Sesn-RB | 3053 | CG11299-RB | 1649..2518 | 886..17 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23731652..23731971 | 718..399 | 1600 | 100 | Minus |
2R | 25286936 | 2R | 23732036..23732220 | 399..215 | 925 | 100 | Minus |
2R | 25286936 | 2R | 23731361..23731529 | 886..718 | 845 | 100 | Minus |
2R | 25286936 | 2R | 23732389..23732505 | 218..102 | 585 | 100 | Minus |
2R | 25286936 | 2R | 23732560..23732648 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:24:18 has no hits.
BS10961.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:54:53 Download gff for
BS10961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11299-PA | 623..1494 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:02 Download gff for
BS10961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11299-PA | 623..1494 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 16:00:52 Download gff for
BS10961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sesn-RB | 1647..2521 | 12..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:17 Download gff for
BS10961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sesn-RB | 1647..2521 | 12..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:17 Download gff for
BS10961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23731359..23731529 | 718..887 | 99 | -> | Minus |
2R | 23731653..23731971 | 399..717 | 100 | -> | Minus |
2R | 23732037..23732220 | 215..398 | 100 | -> | Minus |
2R | 23732393..23732503 | 104..214 | 100 | -> | Minus |
2R | 23732562..23732651 | 12..103 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 16:00:52 Download gff for
BS10961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19618882..19619052 | 718..887 | 99 | -> | Minus |
arm_2R | 19619176..19619494 | 399..717 | 100 | -> | Minus |
arm_2R | 19619560..19619743 | 215..398 | 100 | -> | Minus |
arm_2R | 19619916..19620026 | 104..214 | 100 | -> | Minus |
arm_2R | 19620085..19620174 | 12..103 | 96 | | Minus |
BS10961.5prime Sequence
831 bp (776 high quality bases) assembled on 2006-04-19
> BS10961.5prime
GAAGTTATCAGTCGACATGTACTACGCCGTCGATTACTACGCGGATATGG
GACAAATCTCTCAAGATTGTTTCGCTGCAACGCAAACTGGAGCATCCGAC
TTTGACATGGACGAGCTCGATGACCTGGACCAGGTGACCCAAGTGATTGG
ATATCATCCCCAGTTCCACGATCACTTCCTGGCCACCCAGAACTTCATTA
TGAAGGGCGATGGTCCGCTGCCTAACGATTACAGATACTACTTGGCCATA
ATTGCTGCTGCCCGCCATCAGTGTCCGTATCTGGTGAAGCGCTACGAGAA
GGAGTTCATCAACCAGGGCGGCGATAGTGCCTGGCTGGGCGGCCTGGACT
TTATACCCGCCAAACTACGTGCCATATACGATATCAATAAAATATTAGCC
CATCGGCCCTGGCTGCTGCGCAAGGAGCATATCGAGCGGCTCACCAAGGG
GAAGAACAGCTGGTCGCTGTCGGAGGTGGTGCACGCCATGGTCCTGCTCT
CGCACTTCCACTCGCTGTCCTCCTTTGTGTTCTCCTGCGGCCTCACACAA
AAGCTGGACGGGCTGTCCAGTCCCAAGCTGAAGAGTCCGCCCGCAGCAGT
GGCGGCCCTCGCACCCACCATTCTCATCACTCCCACCTCGCCGACGGAGC
CGCAGAAGGGGAAGCCAGTGCTGGCGGAGATCTCGCTCAACAATGCAAAT
CCGGATTACGACAGCCAGACCGCAGCGAGCAGTAATGGAGGAGCTCCACC
GGACTCGGCAAATGCGGTTGCGGATGGACCCGATGCAACGACCCTTAACG
GATATTTGGCCACGGCGCAGCAGCTGCCGCA
BS10961.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11299-PA | 1494 | CG11299-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sesn-RC | 4745 | CG11299-RC | 1053..1868 | 16..831 | 4080 | 100 | Plus |
Sesn-RB | 3053 | CG11299-RB | 1024..1839 | 16..831 | 4080 | 100 | Plus |
Sesn-RA | 3097 | CG11299-RA | 1068..1883 | 16..831 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23731155..23731529 | 435..809 | 1875 | 100 | Plus |
2R | 25286936 | 2R | 23729049..23729235 | 68..254 | 935 | 100 | Plus |
2R | 25286936 | 2R | 23730909..23731091 | 254..436 | 915 | 100 | Plus |
2R | 25286936 | 2R | 23722824..23722875 | 16..67 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:04:46 has no hits.
BS10961.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:54:54 Download gff for
BS10961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11299-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:04 Download gff for
BS10961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11299-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:54:13 Download gff for
BS10961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sesn-RA | 1062..1882 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:09 Download gff for
BS10961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sesn-RA | 1062..1882 | 9..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:09 Download gff for
BS10961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23730909..23731091 | 254..436 | 100 | -> | Plus |
2R | 23729049..23729234 | 68..253 | 100 | -> | Plus |
2R | 23731653..23731673 | 810..830 | 100 | | Plus |
2R | 23731157..23731529 | 437..809 | 100 | -> | Plus |
2R | 23722818..23722875 | 9..67 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:54:13 Download gff for
BS10961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19610341..19610398 | 9..67 | 94 | -> | Plus |
arm_2R | 19616572..19616757 | 68..253 | 100 | -> | Plus |
arm_2R | 19618432..19618614 | 254..436 | 100 | -> | Plus |
arm_2R | 19618680..19619052 | 437..809 | 100 | -> | Plus |
arm_2R | 19619176..19619196 | 810..830 | 100 | | Plus |
BS10961.complete Sequence
1526 bp assembled on 2006-11-01
GenBank Submission: FJ636746
> BS10961.complete
GAAGTTATCAGTCGACATGTACTACGCCGTCGATTACTACGCGGATATGG
GACAAATCTCTCAAGATTGTTTCGCTGCAACGCAAACTGGAGCATCCGAC
TTTGACATGGACGAGCTCGATGACCTGGACCAGGTGACCCAAGTGATTGG
ATATCATCCCCAGTTCCACGATCACTTCCTGGCCACCCAGAACTTCATTA
TGAAGGGCGATGGTCCGCTGCCTAACGATTACAGATACTACTTGGCCATA
ATTGCTGCTGCCCGCCATCAGTGTCCGTATCTGGTGAAGCGCTACGAGAA
GGAGTTCATCAACCAGGGCGGCGATAGTGCCTGGCTGGGCGGCCTGGACT
TTATACCCGCCAAACTACGTGCCATATACGATATCAATAAAATATTAGCC
CATCGGCCCTGGCTGCTGCGCAAGGAGCATATCGAGCGGCTCACCAAGGG
GAAGAACAGCTGGTCGCTGTCGGAGGTGGTGCACGCCATGGTCCTGCTCT
CGCACTTCCACTCGCTGTCCTCCTTTGTGTTCTCCTGCGGCCTCACACAA
AAGCTGGACGGGCTGTCCAGTCCCAAGCTGAAGAGTCCGCCCGCAGCAGT
GGCGGCCCTCGCACCCACCATTCTCATCACTCCCACCTCGCCGACGGAGC
CGCAGAAGGGGAAGCCAGTGCTGGCGGAGATCTCGCTCAACAATGCAAAT
CCGGATTACGACAGCCAGACCGCAGCGAGCAGTAATGGAGGAGCTCCACC
GGACTCGGCAAATGCGGTTGCGGATGGACCCGATGCAACGACCCTTAACG
GATATTTGGCCACGGCGCAGCAGCTGCCGCAGCAGCACGGCATCAGTGTG
GAGACGCTAATGGAGCGCATGAAGGTCCTGTCCCAGAAGCAGGACGAGTG
CAGCGAGGCGGAGCTGAGCAGCCGCTTCCAGAAGGTGGAGCAGCAGACGG
CGGAGCTGGCGGCCGTGACTCCGGAGGCGGCTGTGGGCGTGCCCACCAAC
CTGTCGCACTACGTGGACGATGCCAACTTCATTTACCAGGACTTTGCCCG
GCGCGGCACCGAGAGCATCAACACGTTTCGCATCCAGGACTACTCTTGGG
AGGATCACGGCTACTCGCTAGTGGACGGATTGTACAACGATGTGGGCATC
TTCTTGGACGCCAAGTTTCGGGCGGCCTACAATCTCACCTACTGCACCAT
GGGCGGCATCAAGAATGTGGACACGTCCAAGTTCCGGCGGGCCATTTGGA
ACTACATCCAGTGCATCTACGGCATTCGCCACGACGACTACGACTATGGC
GAAGTGAACCAGCTCCTGGTGCGTCCCCTGAAAATGTTTATTAAGACAGC
CTGCTGCTTCCCCGAGCGAATCACCACCAAGGACTACGATAGTGTGCTGG
TCGAGCTGCAGGACAGTGAAAAGGTTCATGTGAATCTGATGATAATGGAA
GCCCGTAATCAGGCCGAGTTACTCTATGCTCTGCGCGAGATAATGCGCTA
TATGACTTGAAAGCTTTCTAGACCAT
BS10961.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sesn-RC | 1494 | CG11299-PC | 1..1494 | 17..1510 | 7470 | 100 | Plus |
Sesn-RB | 1494 | CG11299-PB | 1..1494 | 17..1510 | 7470 | 100 | Plus |
Sesn-RA | 1494 | CG11299-PA | 1..1494 | 17..1510 | 7470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sesn-RC | 4745 | CG11299-RC | 1053..2547 | 16..1510 | 7475 | 100 | Plus |
Sesn-RB | 3053 | CG11299-RB | 1024..2518 | 16..1510 | 7475 | 100 | Plus |
Sesn-RA | 3097 | CG11299-RA | 1068..2562 | 16..1510 | 7475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23731155..23731529 | 435..809 | 1875 | 100 | Plus |
2R | 25286936 | 2R | 23731652..23731971 | 809..1128 | 1600 | 100 | Plus |
2R | 25286936 | 2R | 23729049..23729235 | 68..254 | 935 | 100 | Plus |
2R | 25286936 | 2R | 23732036..23732220 | 1128..1312 | 925 | 100 | Plus |
2R | 25286936 | 2R | 23730909..23731091 | 254..436 | 915 | 100 | Plus |
2R | 25286936 | 2R | 23732389..23732505 | 1309..1425 | 585 | 100 | Plus |
2R | 25286936 | 2R | 23732560..23732648 | 1422..1510 | 445 | 100 | Plus |
2R | 25286936 | 2R | 23722824..23722875 | 16..67 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:41:27 has no hits.
BS10961.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:49 Download gff for
BS10961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11299-RC | 1..1494 | 17..1510 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:16 Download gff for
BS10961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11299-RC | 1045..2548 | 9..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:08 Download gff for
BS10961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sesn-RA | 1069..2561 | 17..1509 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:49 Download gff for
BS10961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11299-RC | 1045..2548 | 9..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:27 Download gff for
BS10961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sesn-RA | 1069..2561 | 17..1509 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:27 Download gff for
BS10961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23732562..23732647 | 1424..1509 | 100 | | Plus |
2R | 23732393..23732503 | 1313..1423 | 100 | -> | Plus |
2R | 23722825..23722875 | 17..67 | 100 | -> | Plus |
2R | 23729049..23729234 | 68..253 | 100 | -> | Plus |
2R | 23730909..23731091 | 254..436 | 100 | -> | Plus |
2R | 23731157..23731529 | 437..809 | 100 | -> | Plus |
2R | 23731653..23731971 | 810..1128 | 100 | -> | Plus |
2R | 23732037..23732220 | 1129..1312 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:08 Download gff for
BS10961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19610348..19610398 | 17..67 | 100 | -> | Plus |
arm_2R | 19616572..19616757 | 68..253 | 100 | -> | Plus |
arm_2R | 19618432..19618614 | 254..436 | 100 | -> | Plus |
arm_2R | 19619560..19619743 | 1129..1312 | 100 | -> | Plus |
arm_2R | 19619916..19620026 | 1313..1423 | 100 | -> | Plus |
arm_2R | 19618680..19619052 | 437..809 | 100 | -> | Plus |
arm_2R | 19619176..19619494 | 810..1128 | 100 | -> | Plus |
arm_2R | 19620085..19620170 | 1424..1509 | 100 | | Plus |
BS10961.pep Sequence
Translation from 16 to 1509
> BS10961.pep
MYYAVDYYADMGQISQDCFAATQTGASDFDMDELDDLDQVTQVIGYHPQF
HDHFLATQNFIMKGDGPLPNDYRYYLAIIAAARHQCPYLVKRYEKEFINQ
GGDSAWLGGLDFIPAKLRAIYDINKILAHRPWLLRKEHIERLTKGKNSWS
LSEVVHAMVLLSHFHSLSSFVFSCGLTQKLDGLSSPKLKSPPAAVAALAP
TILITPTSPTEPQKGKPVLAEISLNNANPDYDSQTAASSNGGAPPDSANA
VADGPDATTLNGYLATAQQLPQQHGISVETLMERMKVLSQKQDECSEAEL
SSRFQKVEQQTAELAAVTPEAAVGVPTNLSHYVDDANFIYQDFARRGTES
INTFRIQDYSWEDHGYSLVDGLYNDVGIFLDAKFRAAYNLTYCTMGGIKN
VDTSKFRRAIWNYIQCIYGIRHDDYDYGEVNQLLVRPLKMFIKTACCFPE
RITTKDYDSVLVELQDSEKVHVNLMIMEARNQAELLYALREIMRYMT*
BS10961.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sesn-PC | 497 | CG11299-PC | 1..497 | 1..497 | 2613 | 100 | Plus |
Sesn-PB | 497 | CG11299-PB | 1..497 | 1..497 | 2613 | 100 | Plus |
Sesn-PA | 497 | CG11299-PA | 1..497 | 1..497 | 2613 | 100 | Plus |
Sesn-PD | 467 | CG11299-PD | 1..467 | 31..497 | 2451 | 100 | Plus |