Clone Sequence Records
BS10963.3prime Sequence
681 bp (606 high quality bases) assembled on 2006-04-19
> BS10963.3prime
ATGGTCTAGAAAGCTTTTAAGTCATATTCCAGGAGGACGAAGACGAGCTA
GAAGAGCAATCGTCGCTCTCAGTCGTTGCGCTGCTGCCGTTGGGCTTCGG
TCCCCAGATTCTCACGGTGGCGTCATCGCTTGCGCTGGCCAGCAGGGACG
GGTACACGGGATTCCAGGACACGCAGTTCACCGTCTTAGTGTGCCCGGCC
AGCTTGGCCAGCGGCTCCTCGCGCTTGATGTGCCAAATGTAGACAACCTT
GTCCTCACTGCCGCTGGCAACGAAGCTCTCGTTAACGCCGCCGAAGCAGG
AGTGGATGGCGAAGTTGCTCTGACGTATTCCCTGGAAACGGCGCACAAGG
CACTTGTCCTCGATGTCCCAAAGGTGAAGGCCTTGGTTCGAGACGTTCAG
CAAGGCCAAGCGGTCGGCGGAGTTGATACTAAAGGTCATTATGGGATGTG
GCTCCCTCAGAATATCAAAGTCTGAACGCGGGCTATCAAAGTTGTACCCT
CTGATTCGGCAATGATTATCCGCCGCTAAGATCGTTTTGTTGTCCGCCCG
AAAGGCTATGCTGTTTACGCGCACTCCCTCCCAGGAGTCCACTATGGTAC
CGTTGAGGTCGCATAGGTAAAGCTGACCCTTCTGGCCGTCGCAGACTAAT
CGAGCGCCATCGCGACTGAAGGCACCGTAGG
BS10963.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7611-PE | 1893 | CG7611-RE | 1233..1893 | 677..17 | 3205 | 99.3 | Minus |
CG7611-PF | 1893 | CG7611-RF | 1233..1893 | 677..17 | 3205 | 99.3 | Minus |
CG7611-PG | 1893 | CG7611-RG | 1233..1893 | 677..17 | 3205 | 99.3 | Minus |
CG7611-PB | 1893 | CG7611-RB | 1233..1893 | 677..17 | 3205 | 99.3 | Minus |
CG7611-PH | 1893 | CG7611-RH | 1233..1893 | 677..17 | 3205 | 99.3 | Minus |
CG7611-PC | 1893 | CG7611-RC | 1233..1893 | 677..17 | 3205 | 99.3 | Minus |
CG7611-PD | 1893 | CG7611-RD | 1233..1893 | 677..17 | 3205 | 99.3 | Minus |
CG7611-PA | 1893 | CG7611-RA | 1233..1893 | 677..17 | 3205 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:59:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7611-RJ | 3001 | CG7611-RJ | 1838..2502 | 681..17 | 3250 | 99.2 | Minus |
CG7611-RI | 4464 | CG7611-RI | 3301..3965 | 681..17 | 3250 | 99.2 | Minus |
CG7611-RA | 3810 | CG7611-RA | 2647..3311 | 681..17 | 3250 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:59:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21527183..21527664 | 498..17 | 2410 | 100 | Minus |
3L | 28110227 | 3L | 21526753..21526938 | 681..496 | 855 | 97.3 | Minus |
Blast to na_te.dros performed on 2015-02-01 10:59:16 has no hits.
BS10963.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:54:56 Download gff for
BS10963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-PG | 1229..1893 | 17..681 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:07 Download gff for
BS10963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-PA | 1229..1893 | 17..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:33:17 Download gff for
BS10963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RA | 2647..3311 | 17..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:08:46 Download gff for
BS10963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RA | 2647..3311 | 17..681 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:08:46 Download gff for
BS10963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21526753..21526936 | 498..681 | 97 | -> | Minus |
3L | 21527184..21527664 | 17..497 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:33:17 Download gff for
BS10963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21519853..21520036 | 498..681 | 97 | -> | Minus |
arm_3L | 21520284..21520764 | 17..497 | 100 | | Minus |
BS10963.5prime Sequence
667 bp (492 high quality bases) assembled on 2006-04-19
> BS10963.5prime
GAAGTTATCAGTCGACATGCAGAGCACCAGTTCCACGTCGAGCGGCTCTT
GCTCCAGGCCCCTCGAGGGTTCCACACTCAATTCCGGCGGCAGTGCCGAG
AACGTGGCTCGCGATGGAGGCAGTGGCGATGACAGCGTCGGCATCGGTGA
TGAGAATCCATCGGGCAGCAGCGCCGCCACGAACGGACACGACTCCAAAC
ACAACGGCTTCATTGTCAACAATAACGGCAGCAGCAGTCGCATCGTCGAC
GGCGAGAACAATCGGGAAAACACCAGCTGCAGCGGTGTGCAGCTGGACAA
GTCCAACCAAGAGATCATCCGGCTGATCGGACAGTATCTGCATGACGTCG
GTCTCGATAAGTCAGTCCAAACGCTCATGTTGGAATCCGGATGCTACTTG
GAACACCCCTCTGCAACCAAGTTTAGGGAGCACGTCCTAATGGGTGACTG
GTCAAAGGCAGATTCAGACCTTAAGGACCTAGAGCCACTAATCGACAATG
GGAAATTGGCAACGATCACCGAAATGAAGTTCATATTGCTGGAGCAAAAG
TATTTAGAGCATTTGGATGATGGAAATCCCTTGGACGCCCTTCACGTCCT
TCGCAGCGAGCTGGACTCCCCTGCAGCACAACATAACGTGTGTGCACCAG
CTGACCTCGTACATGAT
BS10963.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7611-PE | 1893 | CG7611-RE | 1..597 | 17..613 | 2960 | 99.8 | Plus |
CG7611-PF | 1893 | CG7611-RF | 1..597 | 17..613 | 2960 | 99.8 | Plus |
CG7611-PG | 1893 | CG7611-RG | 1..597 | 17..613 | 2960 | 99.8 | Plus |
CG7611-PB | 1893 | CG7611-RB | 1..597 | 17..613 | 2960 | 99.8 | Plus |
CG7611-PH | 1893 | CG7611-RH | 1..597 | 17..613 | 2960 | 99.8 | Plus |
CG7611-PC | 1893 | CG7611-RC | 1..597 | 17..613 | 2960 | 99.8 | Plus |
CG7611-PD | 1893 | CG7611-RD | 1..597 | 17..613 | 2960 | 99.8 | Plus |
CG7611-PA | 1893 | CG7611-RA | 1..597 | 17..613 | 2960 | 99.8 | Plus |
CG7611-PE | 1893 | CG7611-RE | 597..650 | 614..667 | 220 | 96.2 | Plus |
CG7611-PF | 1893 | CG7611-RF | 597..650 | 614..667 | 220 | 96.2 | Plus |
CG7611-PG | 1893 | CG7611-RG | 597..650 | 614..667 | 220 | 96.2 | Plus |
CG7611-PB | 1893 | CG7611-RB | 597..650 | 614..667 | 220 | 96.2 | Plus |
CG7611-PH | 1893 | CG7611-RH | 597..650 | 614..667 | 220 | 96.2 | Plus |
CG7611-PC | 1893 | CG7611-RC | 597..650 | 614..667 | 220 | 96.2 | Plus |
CG7611-PD | 1893 | CG7611-RD | 597..650 | 614..667 | 220 | 96.2 | Plus |
CG7611-PA | 1893 | CG7611-RA | 597..650 | 614..667 | 220 | 96.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7611-RJ | 3001 | CG7611-RJ | 609..1259 | 16..667 | 3190 | 99.4 | Plus |
CG7611-RI | 4464 | CG7611-RI | 2072..2722 | 16..667 | 3190 | 99.4 | Plus |
CG7611-RA | 3810 | CG7611-RA | 1418..2068 | 16..667 | 3190 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21525257..21525717 | 16..476 | 2305 | 100 | Plus |
3L | 28110227 | 3L | 21525982..21526174 | 474..667 | 875 | 97.9 | Plus |
Blast to na_te.dros performed 2015-02-13 09:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 1058..1092 | 590..623 | 109 | 82.9 | Plus |
BS10963.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:54:57 Download gff for
BS10963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-PG | 1..650 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:08 Download gff for
BS10963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-PH | 1..650 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:59 Download gff for
BS10963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RA | 1411..2068 | 10..667 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:51:26 Download gff for
BS10963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RA | 1411..2068 | 10..667 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:51:26 Download gff for
BS10963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21525984..21526174 | 476..667 | 97 | | Plus |
3L | 21525250..21525716 | 10..475 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:59 Download gff for
BS10963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21518350..21518816 | 10..475 | 99 | -> | Plus |
arm_3L | 21519084..21519274 | 476..667 | 97 | | Plus |
BS10963.complete Sequence
1925 bp assembled on 2010-07-01
GenBank Submission: KX802559
> BS10963.complete
GAAGTTATCAGTCGACATGCAGAGCACCAGTTCCACGTCGAGCGGCTCTT
GCTCCAGGCCCCTCGAGGGTTCCACACTCAATTCCGGCGGCAGTGCCGAG
AACGTGGCTCGCGATGGAGGCAGTGGCGATGACAGCGTCGGCATCGGTGA
TGAGAATCCATCGGGCAGCAGCGCCGCCACGAACGGACACGACTCCAAAC
ACAACGGCTTCATTGTCAACAATAACGGCAGCAGCAGTCGCATCGTCGAC
GGCGAGAACAATCGGGAAAACACCAGCTGCAGCGGTGTGCAGCTGGACAA
GTCCAACCAAGAGATCATCCGGCTGATCGGACAGTATCTGCATGACGTCG
GTCTCGATAAGTCAGTCCAAACGCTCATGTTGGAATCCGGATGCTACTTG
GAACACCCCTCTGCAACCAAGTTTAGGGAGCACGTCCTAATGGGTGACTG
GTCAAAGGCAGATTCAGACCTTAAGGACCTAGAGCCACTAATCGACAATG
GGAAATTGGCAACGATCACCGAAATGAAGTTCATATTGCTGGAGCAAAAG
TATTTAGAGCATTTGGATGATGGCAATCCCTTGGACGCCCTTCACGTCCT
TCGCAGCGAGCTGACTCCCCTGCAGCACAACATAACGCGTGTGCACCAGC
TGTCCTCGTACATGATGTGTTCTACCAACCAAGACCTTTACCAGCGTGCC
AAGTGGGAGGGCAAGGGCATCCTGTCGCGTGCCTTGGTCATGGAGCGCCT
ACAGACATTTATGCCGCCGTCGGTGATGATGTCGCCACGGCGCCTGCGCA
CCCTGCTGCAGCAGGCCGTGGAGCTGCAGAGCCAACACTGCCCCTGCCAC
GACATGGCGTGGGAGACGAATCTGGAGACAGTCTCGCTGCTCACCGACCA
CTGCTGCACCACGGACGGCTTTCCAATGCAAACTATTCAGATTCTCACCG
ACCATTGCGACGAGGTCTGGTTCTGCAAGTTCTCGCCCGATGGCCTCAAG
CTAGCGACGGGCAGCAAAGACTCCACTGTGATTATCTGGGATGTTGATCC
GTACAAGCTGACCCTTAAGCACCGTCGCGTTCTCGACGGTCAGGCCCAGC
TTAGCGTGAGCTTCGTCAGCTGGAGCCCCGACTCCAAGCTCATCCTTGTC
GGCGGCACCGAGGACTCCCATGAGCTCTACATCTGGAACGTGGACGACGG
CAAGCTAGTGGTCAAGTTCTCGCAGTCTCTGGAGGACAGCCTGGCCTGCG
GTGCCTTCAGTCGCGATGGCGCTCGATTCGTCTGCGGCGGCCAGAAGGGT
CAGCTTTACCTATGCGACCTCAACGGTACCATCGTGGACTCCTGGGAGGG
AGTGCGCGTAAACAGCATAGCCTTTCGGGCGGACAACAAAACGATCTTAG
CGGCGGATAATCATTACCGAATCAGAGGGTACAACTTTGATAGCCCGCGT
TCAGACTTTGATATTCTGAGGGAGCCACATCCCATAATGACCTTTAGTAT
CAACTCCGCCGACCGCTTGGCCTTGCTGAACGTCTCGAACCAAGGCCTTC
ACCTTTGGGACATCGAGGACAAGTGCCTTGTGCGCCGTTTCCAGGGAATA
CGTCAGAGCAACTTCGCCATCCACTCCTGCTTCGGCGGCGTTAACGAGAG
CTTCGTTGCCAGCGGCAGTGAGGACAAGGTTGTCTACATTTGGCACATCA
AGCGCGAGGAGCCGCTGGCCAAGCTGGCCGGGCACACTAAGACGGTGAAC
TGCGTGTCCTGGAATCCCGTGTACCCGTCCCTGCTGGCCAGCGCAAGCGA
TGACGCCACCGTGAGAATCTGGGGACCGAAGCCCAACGGCAGCAGCGCAA
CGACTGAGAGCGACGATTGCTCTTCTAGCTCGTCTTCGTCCTCCTGGAAT
ATGACTTAAAAGCTTTCTAGACCAT
BS10963.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7611-RJ | 1893 | CG7611-PJ | 1..1893 | 17..1909 | 9465 | 100 | Plus |
CG7611-RI | 1893 | CG7611-PI | 1..1893 | 17..1909 | 9465 | 100 | Plus |
CG7611-RA | 1893 | CG7611-PA | 1..1893 | 17..1909 | 9465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7611-RJ | 3001 | CG7611-RJ | 609..2502 | 16..1909 | 9470 | 100 | Plus |
CG7611-RI | 4464 | CG7611-RI | 2072..3965 | 16..1909 | 9470 | 100 | Plus |
CG7611-RA | 3810 | CG7611-RA | 1418..3311 | 16..1909 | 9470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21525982..21526938 | 474..1430 | 4785 | 100 | Plus |
3L | 28110227 | 3L | 21527183..21527664 | 1428..1909 | 2410 | 100 | Plus |
3L | 28110227 | 3L | 21525257..21525717 | 16..476 | 2305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:58:02 has no hits.
BS10963.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 09:18:32 Download gff for
BS10963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RG | 941..2831 | 17..1907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:57 Download gff for
BS10963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RA | 1419..3309 | 17..1907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:28 Download gff for
BS10963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RA | 1419..3309 | 17..1907 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:28 Download gff for
BS10963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21525258..21525716 | 17..475 | 100 | -> | Plus |
3L | 21525984..21526936 | 476..1428 | 100 | -> | Plus |
3L | 21527184..21527662 | 1429..1907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:57 Download gff for
BS10963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21518358..21518816 | 17..475 | 100 | -> | Plus |
arm_3L | 21519084..21520036 | 476..1428 | 100 | -> | Plus |
arm_3L | 21520284..21520762 | 1429..1907 | 100 | | Plus |
BS10963.pep Sequence
Translation from 16 to 1908
> BS10963.pep
MQSTSSTSSGSCSRPLEGSTLNSGGSAENVARDGGSGDDSVGIGDENPSG
SSAATNGHDSKHNGFIVNNNGSSSRIVDGENNRENTSCSGVQLDKSNQEI
IRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADS
DLKDLEPLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELT
PLQHNITRVHQLSSYMMCSTNQDLYQRAKWEGKGILSRALVMERLQTFMP
PSVMMSPRRLRTLLQQAVELQSQHCPCHDMAWETNLETVSLLTDHCCTTD
GFPMQTIQILTDHCDEVWFCKFSPDGLKLATGSKDSTVIIWDVDPYKLTL
KHRRVLDGQAQLSVSFVSWSPDSKLILVGGTEDSHELYIWNVDDGKLVVK
FSQSLEDSLACGAFSRDGARFVCGGQKGQLYLCDLNGTIVDSWEGVRVNS
IAFRADNKTILAADNHYRIRGYNFDSPRSDFDILREPHPIMTFSINSADR
LALLNVSNQGLHLWDIEDKCLVRRFQGIRQSNFAIHSCFGGVNESFVASG
SEDKVVYIWHIKREEPLAKLAGHTKTVNCVSWNPVYPSLLASASDDATVR
IWGPKPNGSSATTESDDCSSSSSSSSWNMT*
BS10963.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:19:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7611-PJ | 630 | CG7611-PJ | 1..630 | 1..630 | 3335 | 100 | Plus |
CG7611-PI | 630 | CG7611-PI | 1..630 | 1..630 | 3335 | 100 | Plus |
CG7611-PA | 630 | CG7611-PA | 1..630 | 1..630 | 3335 | 100 | Plus |
CG7611-PD | 630 | CG7611-PD | 1..630 | 1..630 | 3335 | 100 | Plus |
CG7611-PC | 630 | CG7611-PC | 1..630 | 1..630 | 3335 | 100 | Plus |