Clone BS10963 Report

Search the DGRC for BS10963

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:109
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG7611-RA
Protein status:BS10963.pep: full length peptide match
Sequenced Size:1925

Clone Sequence Records

BS10963.3prime Sequence

681 bp (606 high quality bases) assembled on 2006-04-19

> BS10963.3prime
ATGGTCTAGAAAGCTTTTAAGTCATATTCCAGGAGGACGAAGACGAGCTA
GAAGAGCAATCGTCGCTCTCAGTCGTTGCGCTGCTGCCGTTGGGCTTCGG
TCCCCAGATTCTCACGGTGGCGTCATCGCTTGCGCTGGCCAGCAGGGACG
GGTACACGGGATTCCAGGACACGCAGTTCACCGTCTTAGTGTGCCCGGCC
AGCTTGGCCAGCGGCTCCTCGCGCTTGATGTGCCAAATGTAGACAACCTT
GTCCTCACTGCCGCTGGCAACGAAGCTCTCGTTAACGCCGCCGAAGCAGG
AGTGGATGGCGAAGTTGCTCTGACGTATTCCCTGGAAACGGCGCACAAGG
CACTTGTCCTCGATGTCCCAAAGGTGAAGGCCTTGGTTCGAGACGTTCAG
CAAGGCCAAGCGGTCGGCGGAGTTGATACTAAAGGTCATTATGGGATGTG
GCTCCCTCAGAATATCAAAGTCTGAACGCGGGCTATCAAAGTTGTACCCT
CTGATTCGGCAATGATTATCCGCCGCTAAGATCGTTTTGTTGTCCGCCCG
AAAGGCTATGCTGTTTACGCGCACTCCCTCCCAGGAGTCCACTATGGTAC
CGTTGAGGTCGCATAGGTAAAGCTGACCCTTCTGGCCGTCGCAGACTAAT
CGAGCGCCATCGCGACTGAAGGCACCGTAGG

BS10963.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7611-PE 1893 CG7611-RE 1233..1893 677..17 3205 99.3 Minus
CG7611-PF 1893 CG7611-RF 1233..1893 677..17 3205 99.3 Minus
CG7611-PG 1893 CG7611-RG 1233..1893 677..17 3205 99.3 Minus
CG7611-PB 1893 CG7611-RB 1233..1893 677..17 3205 99.3 Minus
CG7611-PH 1893 CG7611-RH 1233..1893 677..17 3205 99.3 Minus
CG7611-PC 1893 CG7611-RC 1233..1893 677..17 3205 99.3 Minus
CG7611-PD 1893 CG7611-RD 1233..1893 677..17 3205 99.3 Minus
CG7611-PA 1893 CG7611-RA 1233..1893 677..17 3205 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7611-RJ 3001 CG7611-RJ 1838..2502 681..17 3250 99.2 Minus
CG7611-RI 4464 CG7611-RI 3301..3965 681..17 3250 99.2 Minus
CG7611-RA 3810 CG7611-RA 2647..3311 681..17 3250 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21527183..21527664 498..17 2410 100 Minus
3L 28110227 3L 21526753..21526938 681..496 855 97.3 Minus
Blast to na_te.dros performed on 2015-02-01 10:59:16 has no hits.

BS10963.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:54:56 Download gff for BS10963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-PG 1229..1893 17..681 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:07 Download gff for BS10963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-PA 1229..1893 17..681 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:33:17 Download gff for BS10963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-RA 2647..3311 17..681 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:08:46 Download gff for BS10963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-RA 2647..3311 17..681 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:08:46 Download gff for BS10963.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21526753..21526936 498..681 97 -> Minus
3L 21527184..21527664 17..497 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:33:17 Download gff for BS10963.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21519853..21520036 498..681 97 -> Minus
arm_3L 21520284..21520764 17..497 100   Minus

BS10963.5prime Sequence

667 bp (492 high quality bases) assembled on 2006-04-19

> BS10963.5prime
GAAGTTATCAGTCGACATGCAGAGCACCAGTTCCACGTCGAGCGGCTCTT
GCTCCAGGCCCCTCGAGGGTTCCACACTCAATTCCGGCGGCAGTGCCGAG
AACGTGGCTCGCGATGGAGGCAGTGGCGATGACAGCGTCGGCATCGGTGA
TGAGAATCCATCGGGCAGCAGCGCCGCCACGAACGGACACGACTCCAAAC
ACAACGGCTTCATTGTCAACAATAACGGCAGCAGCAGTCGCATCGTCGAC
GGCGAGAACAATCGGGAAAACACCAGCTGCAGCGGTGTGCAGCTGGACAA
GTCCAACCAAGAGATCATCCGGCTGATCGGACAGTATCTGCATGACGTCG
GTCTCGATAAGTCAGTCCAAACGCTCATGTTGGAATCCGGATGCTACTTG
GAACACCCCTCTGCAACCAAGTTTAGGGAGCACGTCCTAATGGGTGACTG
GTCAAAGGCAGATTCAGACCTTAAGGACCTAGAGCCACTAATCGACAATG
GGAAATTGGCAACGATCACCGAAATGAAGTTCATATTGCTGGAGCAAAAG
TATTTAGAGCATTTGGATGATGGAAATCCCTTGGACGCCCTTCACGTCCT
TCGCAGCGAGCTGGACTCCCCTGCAGCACAACATAACGTGTGTGCACCAG
CTGACCTCGTACATGAT

BS10963.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7611-PE 1893 CG7611-RE 1..597 17..613 2960 99.8 Plus
CG7611-PF 1893 CG7611-RF 1..597 17..613 2960 99.8 Plus
CG7611-PG 1893 CG7611-RG 1..597 17..613 2960 99.8 Plus
CG7611-PB 1893 CG7611-RB 1..597 17..613 2960 99.8 Plus
CG7611-PH 1893 CG7611-RH 1..597 17..613 2960 99.8 Plus
CG7611-PC 1893 CG7611-RC 1..597 17..613 2960 99.8 Plus
CG7611-PD 1893 CG7611-RD 1..597 17..613 2960 99.8 Plus
CG7611-PA 1893 CG7611-RA 1..597 17..613 2960 99.8 Plus
CG7611-PE 1893 CG7611-RE 597..650 614..667 220 96.2 Plus
CG7611-PF 1893 CG7611-RF 597..650 614..667 220 96.2 Plus
CG7611-PG 1893 CG7611-RG 597..650 614..667 220 96.2 Plus
CG7611-PB 1893 CG7611-RB 597..650 614..667 220 96.2 Plus
CG7611-PH 1893 CG7611-RH 597..650 614..667 220 96.2 Plus
CG7611-PC 1893 CG7611-RC 597..650 614..667 220 96.2 Plus
CG7611-PD 1893 CG7611-RD 597..650 614..667 220 96.2 Plus
CG7611-PA 1893 CG7611-RA 597..650 614..667 220 96.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7611-RJ 3001 CG7611-RJ 609..1259 16..667 3190 99.4 Plus
CG7611-RI 4464 CG7611-RI 2072..2722 16..667 3190 99.4 Plus
CG7611-RA 3810 CG7611-RA 1418..2068 16..667 3190 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21525257..21525717 16..476 2305 100 Plus
3L 28110227 3L 21525982..21526174 474..667 875 97.9 Plus
Blast to na_te.dros performed 2015-02-13 09:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 1058..1092 590..623 109 82.9 Plus

BS10963.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:54:57 Download gff for BS10963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-PG 1..650 17..667 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:08 Download gff for BS10963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-PH 1..650 17..667 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:59 Download gff for BS10963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-RA 1411..2068 10..667 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:51:26 Download gff for BS10963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-RA 1411..2068 10..667 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:51:26 Download gff for BS10963.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21525984..21526174 476..667 97   Plus
3L 21525250..21525716 10..475 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:59 Download gff for BS10963.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21518350..21518816 10..475 99 -> Plus
arm_3L 21519084..21519274 476..667 97   Plus

BS10963.complete Sequence

1925 bp assembled on 2010-07-01

GenBank Submission: KX802559

> BS10963.complete
GAAGTTATCAGTCGACATGCAGAGCACCAGTTCCACGTCGAGCGGCTCTT
GCTCCAGGCCCCTCGAGGGTTCCACACTCAATTCCGGCGGCAGTGCCGAG
AACGTGGCTCGCGATGGAGGCAGTGGCGATGACAGCGTCGGCATCGGTGA
TGAGAATCCATCGGGCAGCAGCGCCGCCACGAACGGACACGACTCCAAAC
ACAACGGCTTCATTGTCAACAATAACGGCAGCAGCAGTCGCATCGTCGAC
GGCGAGAACAATCGGGAAAACACCAGCTGCAGCGGTGTGCAGCTGGACAA
GTCCAACCAAGAGATCATCCGGCTGATCGGACAGTATCTGCATGACGTCG
GTCTCGATAAGTCAGTCCAAACGCTCATGTTGGAATCCGGATGCTACTTG
GAACACCCCTCTGCAACCAAGTTTAGGGAGCACGTCCTAATGGGTGACTG
GTCAAAGGCAGATTCAGACCTTAAGGACCTAGAGCCACTAATCGACAATG
GGAAATTGGCAACGATCACCGAAATGAAGTTCATATTGCTGGAGCAAAAG
TATTTAGAGCATTTGGATGATGGCAATCCCTTGGACGCCCTTCACGTCCT
TCGCAGCGAGCTGACTCCCCTGCAGCACAACATAACGCGTGTGCACCAGC
TGTCCTCGTACATGATGTGTTCTACCAACCAAGACCTTTACCAGCGTGCC
AAGTGGGAGGGCAAGGGCATCCTGTCGCGTGCCTTGGTCATGGAGCGCCT
ACAGACATTTATGCCGCCGTCGGTGATGATGTCGCCACGGCGCCTGCGCA
CCCTGCTGCAGCAGGCCGTGGAGCTGCAGAGCCAACACTGCCCCTGCCAC
GACATGGCGTGGGAGACGAATCTGGAGACAGTCTCGCTGCTCACCGACCA
CTGCTGCACCACGGACGGCTTTCCAATGCAAACTATTCAGATTCTCACCG
ACCATTGCGACGAGGTCTGGTTCTGCAAGTTCTCGCCCGATGGCCTCAAG
CTAGCGACGGGCAGCAAAGACTCCACTGTGATTATCTGGGATGTTGATCC
GTACAAGCTGACCCTTAAGCACCGTCGCGTTCTCGACGGTCAGGCCCAGC
TTAGCGTGAGCTTCGTCAGCTGGAGCCCCGACTCCAAGCTCATCCTTGTC
GGCGGCACCGAGGACTCCCATGAGCTCTACATCTGGAACGTGGACGACGG
CAAGCTAGTGGTCAAGTTCTCGCAGTCTCTGGAGGACAGCCTGGCCTGCG
GTGCCTTCAGTCGCGATGGCGCTCGATTCGTCTGCGGCGGCCAGAAGGGT
CAGCTTTACCTATGCGACCTCAACGGTACCATCGTGGACTCCTGGGAGGG
AGTGCGCGTAAACAGCATAGCCTTTCGGGCGGACAACAAAACGATCTTAG
CGGCGGATAATCATTACCGAATCAGAGGGTACAACTTTGATAGCCCGCGT
TCAGACTTTGATATTCTGAGGGAGCCACATCCCATAATGACCTTTAGTAT
CAACTCCGCCGACCGCTTGGCCTTGCTGAACGTCTCGAACCAAGGCCTTC
ACCTTTGGGACATCGAGGACAAGTGCCTTGTGCGCCGTTTCCAGGGAATA
CGTCAGAGCAACTTCGCCATCCACTCCTGCTTCGGCGGCGTTAACGAGAG
CTTCGTTGCCAGCGGCAGTGAGGACAAGGTTGTCTACATTTGGCACATCA
AGCGCGAGGAGCCGCTGGCCAAGCTGGCCGGGCACACTAAGACGGTGAAC
TGCGTGTCCTGGAATCCCGTGTACCCGTCCCTGCTGGCCAGCGCAAGCGA
TGACGCCACCGTGAGAATCTGGGGACCGAAGCCCAACGGCAGCAGCGCAA
CGACTGAGAGCGACGATTGCTCTTCTAGCTCGTCTTCGTCCTCCTGGAAT
ATGACTTAAAAGCTTTCTAGACCAT

BS10963.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7611-RJ 1893 CG7611-PJ 1..1893 17..1909 9465 100 Plus
CG7611-RI 1893 CG7611-PI 1..1893 17..1909 9465 100 Plus
CG7611-RA 1893 CG7611-PA 1..1893 17..1909 9465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7611-RJ 3001 CG7611-RJ 609..2502 16..1909 9470 100 Plus
CG7611-RI 4464 CG7611-RI 2072..3965 16..1909 9470 100 Plus
CG7611-RA 3810 CG7611-RA 1418..3311 16..1909 9470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21525982..21526938 474..1430 4785 100 Plus
3L 28110227 3L 21527183..21527664 1428..1909 2410 100 Plus
3L 28110227 3L 21525257..21525717 16..476 2305 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:58:02 has no hits.

BS10963.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 09:18:32 Download gff for BS10963.complete
Subject Subject Range Query Range Percent Splice Strand
CG7611-RG 941..2831 17..1907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:57 Download gff for BS10963.complete
Subject Subject Range Query Range Percent Splice Strand
CG7611-RA 1419..3309 17..1907 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:28 Download gff for BS10963.complete
Subject Subject Range Query Range Percent Splice Strand
CG7611-RA 1419..3309 17..1907 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:28 Download gff for BS10963.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21525258..21525716 17..475 100 -> Plus
3L 21525984..21526936 476..1428 100 -> Plus
3L 21527184..21527662 1429..1907 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:57 Download gff for BS10963.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21518358..21518816 17..475 100 -> Plus
arm_3L 21519084..21520036 476..1428 100 -> Plus
arm_3L 21520284..21520762 1429..1907 100   Plus

BS10963.pep Sequence

Translation from 16 to 1908

> BS10963.pep
MQSTSSTSSGSCSRPLEGSTLNSGGSAENVARDGGSGDDSVGIGDENPSG
SSAATNGHDSKHNGFIVNNNGSSSRIVDGENNRENTSCSGVQLDKSNQEI
IRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADS
DLKDLEPLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELT
PLQHNITRVHQLSSYMMCSTNQDLYQRAKWEGKGILSRALVMERLQTFMP
PSVMMSPRRLRTLLQQAVELQSQHCPCHDMAWETNLETVSLLTDHCCTTD
GFPMQTIQILTDHCDEVWFCKFSPDGLKLATGSKDSTVIIWDVDPYKLTL
KHRRVLDGQAQLSVSFVSWSPDSKLILVGGTEDSHELYIWNVDDGKLVVK
FSQSLEDSLACGAFSRDGARFVCGGQKGQLYLCDLNGTIVDSWEGVRVNS
IAFRADNKTILAADNHYRIRGYNFDSPRSDFDILREPHPIMTFSINSADR
LALLNVSNQGLHLWDIEDKCLVRRFQGIRQSNFAIHSCFGGVNESFVASG
SEDKVVYIWHIKREEPLAKLAGHTKTVNCVSWNPVYPSLLASASDDATVR
IWGPKPNGSSATTESDDCSSSSSSSSWNMT*

BS10963.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7611-PJ 630 CG7611-PJ 1..630 1..630 3335 100 Plus
CG7611-PI 630 CG7611-PI 1..630 1..630 3335 100 Plus
CG7611-PA 630 CG7611-PA 1..630 1..630 3335 100 Plus
CG7611-PD 630 CG7611-PD 1..630 1..630 3335 100 Plus
CG7611-PC 630 CG7611-PC 1..630 1..630 3335 100 Plus