Clone BS10969 Report

Search the DGRC for BS10969

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:109
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptMlc2-RA
Protein status:BS10969.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10969.5prime Sequence

699 bp (698 high quality bases) assembled on 2006-04-19

> BS10969.5prime
GAAGTTATCAGTCGACATGGCCGATGAGAAGAAGAAGGTTAAGAAGAAGA
AGACCAAGGAAGAGGGTGGTACTTCCGAAACCGCTTCTGAGGCCGCATCC
GAGGCAGCAACCCCGGCACCAGCTGCCACTCCTGCCCCGGCCGCATCTGC
CACTGGTTCGAAGAGAGCGTCGGGCGGATCCCGTGGCTCCAGGAAGTCGA
AGCGCGCTGGCTCCTCGGTCTTCTCTGTGTTCTCCCAGAAGCAGATCGCC
GAGTTCAAGGAGGCCTTCCAACTCATGGATGCCGACAAGGACGGTATTAT
TGGCAAGAACGATCTGCGCGCTGCCTTCGACTCCGTCGGCAAGATCGCCA
ACGACAAGGAGTTGGACGCCATGCTGGGCGAGGCCTCGGGTCCGATCAAC
TTCACCCAGTTGCTGACCCTGTTCGCCAACCGCATGGCCACCTCCGGTGC
CAACGATGAAGACGAAGTTGTTATTGCTGCCTTCAAAACATTCGATAACG
ATGGTCTCATCGACGGTGACAAATTCCGCGAAATGCTCATGAACTTCGGT
GACAAGTTCACCATGAAGGAGGTTGATGATGCCTACGATCAGATGGTGAT
CGACGACAAGAACCAGATCGATACCGCCGCCCTGATCGAGATGCTCACCG
GCAAGGGTGAAGAGGAGGAGGAGGAGGCCGCCTAACAGCTTTCTAGACC

BS10969.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2184-PA 669 Mlc2-RA 1..669 17..685 3345 100 Plus
CG2184-PB 606 Mlc2-RB 265..606 344..685 1710 100 Plus
CG2184-PB 606 Mlc2-RB 1..264 17..280 1320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc2-RA 2286 CG2184-RA 65..734 16..685 3350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30172990..30173414 685..261 2125 100 Minus
3R 32079331 3R 30173571..30173815 263..19 1225 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:39:23 has no hits.

BS10969.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:10 Download gff for BS10969.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlc2-PA 1..669 17..685 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:26 Download gff for BS10969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2184-PA 1..669 17..685 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:48:37 Download gff for BS10969.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 54..737 2..689 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:03 Download gff for BS10969.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 54..737 2..689 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:03 Download gff for BS10969.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30172987..30173412 263..689 99 <- Minus
3R 30173572..30173823 8..262 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:48:37 Download gff for BS10969.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25998709..25999134 263..689 99 <- Minus
arm_3R 25999294..25999545 8..262 98   Minus

BS10969.3prime Sequence

699 bp (698 high quality bases) assembled on 2006-04-19

> BS10969.3prime
ATGGTCTAGAAAGCTTTTAGGCGGCCTCCTCCTCCTCCTCTTCACCCTTG
CCGGTGAGCATCTCGATCAGGGCGGCGGTATCGATCTGGTTCTTGTCGTC
GATCACCATCTGATCGTAGGCATCATCAACCTCCTTCATGGTGAACTTGT
CACCGAAGTTCATGAGCATTTCGCGGAATTTGTCACCGTCGATGAGACCA
TCGTTATCGAATGTTTTGAAGGCAGCAATAACAACTTCGTCTTCATCGTT
GGCACCGGAGGTGGCCATGCGGTTGGCGAACAGGGTCAGCAACTGGGTGA
AGTTGATCGGACCCGAGGCCTCGCCCAGCATGGCGTCCAACTCCTTGTCG
TTGGCGATCTTGCCGACGGAGTCGAAGGCAGCGCGCAGATCGTTCTTGCC
AATAATACCGTCCTTGTCGGCATCCATGAGTTGGAAGGCCTCCTTGAACT
CGGCGATCTGCTTCTGGGAGAACACAGAGAAGACCGAGGAGCCAGCGCGC
TTCGACTTCCTGGAGCCACGGGATCCGCCCGACGCTCTCTTCGAACCAGT
GGCAGATGCGGCCGGGGCAGGAGTGGCAGCTGGTGCCGGGGTTGCTGCCT
CGGATGCGGCCTCAGAAGCGGTTTCGGAAGTACCACCCTCTTCCTTGGTC
TTCTTCTTCTTAACCTTCTTCTTCTCATCGGCCATGTCGACTGATAACT

BS10969.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2184-PA 669 Mlc2-RA 1..669 685..17 3345 100 Minus
CG2184-PB 606 Mlc2-RB 265..606 358..17 1710 100 Minus
CG2184-PB 606 Mlc2-RB 1..264 685..422 1320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc2-RA 2286 CG2184-RA 65..734 686..17 3350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30172990..30173414 17..441 2125 100 Plus
3R 32079331 3R 30173571..30173815 439..683 1225 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:51:30 has no hits.

BS10969.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:09 Download gff for BS10969.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlc2-PA 1..669 17..685 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:24 Download gff for BS10969.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2184-PA 1..669 17..685 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:58:27 Download gff for BS10969.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 55..737 13..699 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:41 Download gff for BS10969.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 55..737 13..699 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:41 Download gff for BS10969.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30172987..30173412 13..439 99 <- Plus
3R 30173572..30173823 440..694 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:58:27 Download gff for BS10969.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25998709..25999134 13..439 99 <- Plus
arm_3R 25999294..25999545 440..694 98   Plus

BS10969.complete Sequence

701 bp assembled on 2006-11-01

GenBank Submission: FJ636747

> BS10969.complete
GAAGTTATCAGTCGACATGGCCGATGAGAAGAAGAAGGTTAAGAAGAAGA
AGACCAAGGAAGAGGGTGGTACTTCCGAAACCGCTTCTGAGGCCGCATCC
GAGGCAGCAACCCCGGCACCAGCTGCCACTCCTGCCCCGGCCGCATCTGC
CACTGGTTCGAAGAGAGCGTCGGGCGGATCCCGTGGCTCCAGGAAGTCGA
AGCGCGCTGGCTCCTCGGTCTTCTCTGTGTTCTCCCAGAAGCAGATCGCC
GAGTTCAAGGAGGCCTTCCAACTCATGGATGCCGACAAGGACGGTATTAT
TGGCAAGAACGATCTGCGCGCTGCCTTCGACTCCGTCGGCAAGATCGCCA
ACGACAAGGAGTTGGACGCCATGCTGGGCGAGGCCTCGGGTCCGATCAAC
TTCACCCAGTTGCTGACCCTGTTCGCCAACCGCATGGCCACCTCCGGTGC
CAACGATGAAGACGAAGTTGTTATTGCTGCCTTCAAAACATTCGATAACG
ATGGTCTCATCGACGGTGACAAATTCCGCGAAATGCTCATGAACTTCGGT
GACAAGTTCACCATGAAGGAGGTTGATGATGCCTACGATCAGATGGTGAT
CGACGACAAGAACCAGATCGATACCGCCGCCCTGATCGAGATGCTCACCG
GCAAGGGTGAAGAGGAGGAGGAGGAGGCCGCCTAAAAGCTTTCTAGACCA
T

BS10969.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc2-RA 669 CG2184-PA 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc2-RA 2286 CG2184-RA 65..734 16..685 3350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30172990..30173414 685..261 2125 100 Minus
3R 32079331 3R 30173571..30173815 263..19 1225 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:41:44 has no hits.

BS10969.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:50 Download gff for BS10969.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 1..669 17..685 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:18 Download gff for BS10969.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 54..737 2..689 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:28 Download gff for BS10969.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 66..732 17..683 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:50 Download gff for BS10969.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 54..737 2..689 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:22 Download gff for BS10969.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 66..732 17..683 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:22 Download gff for BS10969.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30172992..30173412 263..683 100 <- Minus
3R 30173572..30173816 17..262 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:28 Download gff for BS10969.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25998714..25999134 263..683 100 <- Minus
arm_3R 25999294..25999538 17..262 99   Minus

BS10969.pep Sequence

Translation from 16 to 684

> BS10969.pep
MADEKKKVKKKKTKEEGGTSETASEAASEAATPAPAATPAPAASATGSKR
ASGGSRGSRKSKRAGSSVFSVFSQKQIAEFKEAFQLMDADKDGIIGKNDL
RAAFDSVGKIANDKELDAMLGEASGPINFTQLLTLFANRMATSGANDEDE
VVIAAFKTFDNDGLIDGDKFREMLMNFGDKFTMKEVDDAYDQMVIDDKNQ
IDTAALIEMLTGKGEEEEEEAA*

BS10969.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc2-PA 222 CG2184-PA 1..222 1..222 1103 100 Plus
sqh-PE 174 CG3595-PE 2..150 48..195 303 44.1 Plus
sqh-PD 174 CG3595-PD 2..150 48..195 303 44.1 Plus
sqh-PC 174 CG3595-PC 2..150 48..195 303 44.1 Plus
sqh-PB 174 CG3595-PB 2..150 48..195 303 44.1 Plus