Clone Sequence Records
BS10969.5prime Sequence
699 bp (698 high quality bases) assembled on 2006-04-19
> BS10969.5prime
GAAGTTATCAGTCGACATGGCCGATGAGAAGAAGAAGGTTAAGAAGAAGA
AGACCAAGGAAGAGGGTGGTACTTCCGAAACCGCTTCTGAGGCCGCATCC
GAGGCAGCAACCCCGGCACCAGCTGCCACTCCTGCCCCGGCCGCATCTGC
CACTGGTTCGAAGAGAGCGTCGGGCGGATCCCGTGGCTCCAGGAAGTCGA
AGCGCGCTGGCTCCTCGGTCTTCTCTGTGTTCTCCCAGAAGCAGATCGCC
GAGTTCAAGGAGGCCTTCCAACTCATGGATGCCGACAAGGACGGTATTAT
TGGCAAGAACGATCTGCGCGCTGCCTTCGACTCCGTCGGCAAGATCGCCA
ACGACAAGGAGTTGGACGCCATGCTGGGCGAGGCCTCGGGTCCGATCAAC
TTCACCCAGTTGCTGACCCTGTTCGCCAACCGCATGGCCACCTCCGGTGC
CAACGATGAAGACGAAGTTGTTATTGCTGCCTTCAAAACATTCGATAACG
ATGGTCTCATCGACGGTGACAAATTCCGCGAAATGCTCATGAACTTCGGT
GACAAGTTCACCATGAAGGAGGTTGATGATGCCTACGATCAGATGGTGAT
CGACGACAAGAACCAGATCGATACCGCCGCCCTGATCGAGATGCTCACCG
GCAAGGGTGAAGAGGAGGAGGAGGAGGCCGCCTAACAGCTTTCTAGACC
BS10969.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2184-PA | 669 | Mlc2-RA | 1..669 | 17..685 | 3345 | 100 | Plus |
CG2184-PB | 606 | Mlc2-RB | 265..606 | 344..685 | 1710 | 100 | Plus |
CG2184-PB | 606 | Mlc2-RB | 1..264 | 17..280 | 1320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc2-RA | 2286 | CG2184-RA | 65..734 | 16..685 | 3350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30172990..30173414 | 685..261 | 2125 | 100 | Minus |
3R | 32079331 | 3R | 30173571..30173815 | 263..19 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:39:23 has no hits.
BS10969.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:10 Download gff for
BS10969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-PA | 1..669 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:26 Download gff for
BS10969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2184-PA | 1..669 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:48:37 Download gff for
BS10969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 54..737 | 2..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:03 Download gff for
BS10969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 54..737 | 2..689 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:03 Download gff for
BS10969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30172987..30173412 | 263..689 | 99 | <- | Minus |
3R | 30173572..30173823 | 8..262 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:48:37 Download gff for
BS10969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25998709..25999134 | 263..689 | 99 | <- | Minus |
arm_3R | 25999294..25999545 | 8..262 | 98 | | Minus |
BS10969.3prime Sequence
699 bp (698 high quality bases) assembled on 2006-04-19
> BS10969.3prime
ATGGTCTAGAAAGCTTTTAGGCGGCCTCCTCCTCCTCCTCTTCACCCTTG
CCGGTGAGCATCTCGATCAGGGCGGCGGTATCGATCTGGTTCTTGTCGTC
GATCACCATCTGATCGTAGGCATCATCAACCTCCTTCATGGTGAACTTGT
CACCGAAGTTCATGAGCATTTCGCGGAATTTGTCACCGTCGATGAGACCA
TCGTTATCGAATGTTTTGAAGGCAGCAATAACAACTTCGTCTTCATCGTT
GGCACCGGAGGTGGCCATGCGGTTGGCGAACAGGGTCAGCAACTGGGTGA
AGTTGATCGGACCCGAGGCCTCGCCCAGCATGGCGTCCAACTCCTTGTCG
TTGGCGATCTTGCCGACGGAGTCGAAGGCAGCGCGCAGATCGTTCTTGCC
AATAATACCGTCCTTGTCGGCATCCATGAGTTGGAAGGCCTCCTTGAACT
CGGCGATCTGCTTCTGGGAGAACACAGAGAAGACCGAGGAGCCAGCGCGC
TTCGACTTCCTGGAGCCACGGGATCCGCCCGACGCTCTCTTCGAACCAGT
GGCAGATGCGGCCGGGGCAGGAGTGGCAGCTGGTGCCGGGGTTGCTGCCT
CGGATGCGGCCTCAGAAGCGGTTTCGGAAGTACCACCCTCTTCCTTGGTC
TTCTTCTTCTTAACCTTCTTCTTCTCATCGGCCATGTCGACTGATAACT
BS10969.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2184-PA | 669 | Mlc2-RA | 1..669 | 685..17 | 3345 | 100 | Minus |
CG2184-PB | 606 | Mlc2-RB | 265..606 | 358..17 | 1710 | 100 | Minus |
CG2184-PB | 606 | Mlc2-RB | 1..264 | 685..422 | 1320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc2-RA | 2286 | CG2184-RA | 65..734 | 686..17 | 3350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30172990..30173414 | 17..441 | 2125 | 100 | Plus |
3R | 32079331 | 3R | 30173571..30173815 | 439..683 | 1225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:51:30 has no hits.
BS10969.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:09 Download gff for
BS10969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-PA | 1..669 | 17..685 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:24 Download gff for
BS10969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2184-PA | 1..669 | 17..685 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:58:27 Download gff for
BS10969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 55..737 | 13..699 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:41 Download gff for
BS10969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 55..737 | 13..699 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:41 Download gff for
BS10969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30172987..30173412 | 13..439 | 99 | <- | Plus |
3R | 30173572..30173823 | 440..694 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:58:27 Download gff for
BS10969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25998709..25999134 | 13..439 | 99 | <- | Plus |
arm_3R | 25999294..25999545 | 440..694 | 98 | | Plus |
BS10969.complete Sequence
701 bp assembled on 2006-11-01
GenBank Submission: FJ636747
> BS10969.complete
GAAGTTATCAGTCGACATGGCCGATGAGAAGAAGAAGGTTAAGAAGAAGA
AGACCAAGGAAGAGGGTGGTACTTCCGAAACCGCTTCTGAGGCCGCATCC
GAGGCAGCAACCCCGGCACCAGCTGCCACTCCTGCCCCGGCCGCATCTGC
CACTGGTTCGAAGAGAGCGTCGGGCGGATCCCGTGGCTCCAGGAAGTCGA
AGCGCGCTGGCTCCTCGGTCTTCTCTGTGTTCTCCCAGAAGCAGATCGCC
GAGTTCAAGGAGGCCTTCCAACTCATGGATGCCGACAAGGACGGTATTAT
TGGCAAGAACGATCTGCGCGCTGCCTTCGACTCCGTCGGCAAGATCGCCA
ACGACAAGGAGTTGGACGCCATGCTGGGCGAGGCCTCGGGTCCGATCAAC
TTCACCCAGTTGCTGACCCTGTTCGCCAACCGCATGGCCACCTCCGGTGC
CAACGATGAAGACGAAGTTGTTATTGCTGCCTTCAAAACATTCGATAACG
ATGGTCTCATCGACGGTGACAAATTCCGCGAAATGCTCATGAACTTCGGT
GACAAGTTCACCATGAAGGAGGTTGATGATGCCTACGATCAGATGGTGAT
CGACGACAAGAACCAGATCGATACCGCCGCCCTGATCGAGATGCTCACCG
GCAAGGGTGAAGAGGAGGAGGAGGAGGCCGCCTAAAAGCTTTCTAGACCA
T
BS10969.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc2-RA | 669 | CG2184-PA | 1..669 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc2-RA | 2286 | CG2184-RA | 65..734 | 16..685 | 3350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30172990..30173414 | 685..261 | 2125 | 100 | Minus |
3R | 32079331 | 3R | 30173571..30173815 | 263..19 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:41:44 has no hits.
BS10969.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:50 Download gff for
BS10969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 1..669 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:18 Download gff for
BS10969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 54..737 | 2..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:28 Download gff for
BS10969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 66..732 | 17..683 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:50 Download gff for
BS10969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 54..737 | 2..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:22 Download gff for
BS10969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 66..732 | 17..683 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:22 Download gff for
BS10969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30172992..30173412 | 263..683 | 100 | <- | Minus |
3R | 30173572..30173816 | 17..262 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:28 Download gff for
BS10969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25998714..25999134 | 263..683 | 100 | <- | Minus |
arm_3R | 25999294..25999538 | 17..262 | 99 | | Minus |
BS10969.pep Sequence
Translation from 16 to 684
> BS10969.pep
MADEKKKVKKKKTKEEGGTSETASEAASEAATPAPAATPAPAASATGSKR
ASGGSRGSRKSKRAGSSVFSVFSQKQIAEFKEAFQLMDADKDGIIGKNDL
RAAFDSVGKIANDKELDAMLGEASGPINFTQLLTLFANRMATSGANDEDE
VVIAAFKTFDNDGLIDGDKFREMLMNFGDKFTMKEVDDAYDQMVIDDKNQ
IDTAALIEMLTGKGEEEEEEAA*
BS10969.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc2-PA | 222 | CG2184-PA | 1..222 | 1..222 | 1103 | 100 | Plus |
sqh-PE | 174 | CG3595-PE | 2..150 | 48..195 | 303 | 44.1 | Plus |
sqh-PD | 174 | CG3595-PD | 2..150 | 48..195 | 303 | 44.1 | Plus |
sqh-PC | 174 | CG3595-PC | 2..150 | 48..195 | 303 | 44.1 | Plus |
sqh-PB | 174 | CG3595-PB | 2..150 | 48..195 | 303 | 44.1 | Plus |