Clone BS10970 Report

Search the DGRC for BS10970

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:109
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG3534-RA
Protein status:BS10970.pep: full length peptide match
Sequenced Size:1691

Clone Sequence Records

BS10970.3prime Sequence

876 bp (798 high quality bases) assembled on 2006-04-19

> BS10970.3prime
ATGGTCTAGAAAGCTTTTATGTGTTAGGATTGGACAGGACGCGCGCCATT
TCGCGATATCGTTGTAGCATTGGAGCGTAGATTTCCTCGCTGTCCTTGTG
TGGTTCGCATACAAGGCTCAGTTTGTTACTTGTCAGACTTAGGATATAAT
CTCGGTAACAGAGAGGCGTCACCCCATCACCTGCCTCTTGAAGGTACAGA
GCGTAGGCGGATCGATAAGCGGCTCCCAGTAGGGCAGCCTCAAATCCTTC
ATCCTGGATATGGACGGGAGCATTGAACACATCGGCAATTGTTTGCAGGA
TTGATTTGTTAACAGATGCGCCTCCTGTGACAAGGATTTGTGTCTCGGGT
CCGAATTTGTAGCCAAGGTCTTCAGCCACAGCCCGGTGATGCAGCATCTG
ACCTTCAACTAGGGCTCGAATTTCGATTTGGGGCGAGCTGAATTTGATTA
CACCCCTAGCCGCGTCCGGGGAACTGGGATCCATTTCCCTGTTCCATCGC
AGAATACCCTGCGCCTTGGGAATGATTTCCATGTCGTTAAAGTGCACGGC
CATGTTCCCAAAGTTTCCACGGGGCGTGGAGTCGAGATACTCATTGAATT
TATCCCAATCGCCGCCGGTTGTCTTCTTGTTCATTTCCTCACGGACCAAT
GAAGCATTTCTAAAACATAGAAGGCCCATGAATTCTTCCGTTTCAGTTGG
ATGGCAGAGTATATGACCCTCCTCCCAGTTTAGCGGCTCCTTCAAGCTCA
TCATTAGGGTGTCACTTGTGCCCATGGAAATGGTAAGCCAGCTGCTGCCC
ACCAACATTCCAGACAGCGCCGAAGGATTGTCCCCCGTGCTAGCAGCCAC
TTTGCAATCGGGCGAAAAACTAAAGC

BS10970.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-PA 1659 CG3534-RA 800..1659 876..17 4300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-RA 1979 CG3534-RA 943..1803 876..16 4305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16999033..16999273 256..16 1205 100 Minus
3R 32079331 3R 16998350..16998572 666..444 1115 100 Minus
3R 32079331 3R 16998082..16998292 876..666 1055 100 Minus
3R 32079331 3R 16998787..16998977 443..253 955 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:30:59 has no hits.

BS10970.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:11 Download gff for BS10970.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-PA 800..1659 17..876 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:27 Download gff for BS10970.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-PA 800..1659 17..876 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:18:42 Download gff for BS10970.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 943..1811 5..876 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:43:34 Download gff for BS10970.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 943..1811 5..876 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:43:34 Download gff for BS10970.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16999036..16999281 5..253 97   Minus
3R 16998082..16998292 666..876 100 -> Minus
3R 16998351..16998572 444..665 100 -> Minus
3R 16998787..16998976 254..443 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:18:42 Download gff for BS10970.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12824509..12824698 254..443 100 -> Minus
arm_3R 12824758..12825003 5..253 97   Minus
arm_3R 12823804..12824014 666..876 100 -> Minus
arm_3R 12824073..12824294 444..665 100 -> Minus

BS10970.5prime Sequence

840 bp (809 high quality bases) assembled on 2006-04-19

> BS10970.5prime
GAAGTTATCAGTCGACATGGGTCCGCCAAAGCAGCTGAAACGAACCTTTC
TTGGCTTCGACTTGAGCACGCAAAAGCTCAAAGCCGTCCTGCTGGGCTCC
AGTTTGGAGGTGGTTGCCGCGGCTGAAGTGAAATTCGACACCGACTTGCC
GGAGTTCCGGACCACCGGTGGAGCCAACGCTGGATCCATCAAAAATGAAT
ACTTTGTACAACCAGTGATGTGGGTGAAGGCCATGGACATTGTCCTGGAC
CGACTGGTTATGCAGCAAGCGGATCTTAGCACCGTAGCTGCCATCAGTGG
CTCCGGACAGCAGCACGGATCGCTCTACTGGTCCAAACATGGAATCAACA
CGCTGCAAAACCTCGATTCCGAGAAGTTCCTTCACGCACAAATCGACGAC
TCCGCCTTTGTGGTAAATCGTACTCCGATTTGGATGGACGCCACCACCAC
CAAACAGTGCCTAGAGATGGAGATGGCTGTTGGTGGCAAACTTAACATGG
TGGAACTGACGGGCTCGAAGTGCTACGAACGTTTTACGGGTCCCCAAATT
AGAAAGATATATCAGCAACGCTGCCACGCCTACGAAGAGGCCAACCGAAT
CTCATTGGTCAGCAGTTTTATATCATCGCTATTTCTGGGCTCCGTCGCTC
CAATTGACTTCAGTGATGGTTCCGGCATGAATCTGCTGGACATCCGCAAG
AAGAACTGGTCCAAAGAATGCCTAAATGTTTGTGCACCCGATTTGGACAA
GCGCCTGGACATTCCGGTCAGTCCAAATTCGATTTTAGGCAACGTCTCTC
CCGTACTTTTGTGGAGCGCTTTAGTTTTTCGCCCGATTGC

BS10970.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-PA 1659 CG3534-RA 1..785 17..801 3925 100 Plus
CG3534-PA 1659 CG3534-RA 790..822 808..840 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-RA 1979 CG3534-RA 142..965 15..840 4080 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16997465..16998104 199..840 3110 99.7 Plus
3R 32079331 3R 16997051..16997174 75..198 620 100 Plus
3R 32079331 3R 16996587..16996648 15..76 310 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:52:15 has no hits.

BS10970.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:12 Download gff for BS10970.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-PA 1..822 17..840 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:29 Download gff for BS10970.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-PA 1..822 17..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:17:47 Download gff for BS10970.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 134..965 9..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:19 Download gff for BS10970.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 134..965 9..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:19 Download gff for BS10970.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16996579..16996648 9..76 95 -> Plus
3R 16997053..16997174 77..198 100 -> Plus
3R 16997465..16998104 199..840 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:17:47 Download gff for BS10970.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12822301..12822370 9..76 95 -> Plus
arm_3R 12822775..12822896 77..198 100 -> Plus
arm_3R 12823187..12823826 199..840 99   Plus

BS10970.complete Sequence

1691 bp assembled on 2009-08-26

GenBank Submission: KX800676

> BS10970.complete
GAAGTTATCAGTCGACATGGGTCCGCCAAAGCAGCTGAAACGAACCTTTC
TTGGCTTCGACTTGAGCACGCAAAAGCTCAAAGCCGTCCTGCTGGGCTCC
AGTTTGGAGGTGGTTGCCGCGGCTGAAGTGAAATTCGACACCGACTTGCC
GGAGTTCCGGACCACCGGTGGAGCCAACGCTGGATCCATCAAAAATGAAT
ACTTTGTACAACCAGTGATGTGGGTGAAGGCCATGGACATTGTCCTGGAC
CGACTGGTTATGCAGCAAGCGGATCTTAGCACCGTAGCTGCCATCAGTGG
CTCCGGACAGCAGCACGGATCGCTCTACTGGTCCAAACATGGAATCAACA
CGCTGCAAAACCTCGATTCCGAGAAGTTCCTTCACGCACAAATCGACGAC
TCCGCCTTTGTGGTAAATCGTACTCCGATTTGGATGGACGCCACCACCAC
CAAACAGTGCCTAGAGATGGAGATGGCTGTTGGTGGCAAACTTAACATGG
TGGAACTGACGGGCTCGAAGTGCTACGAACGTTTTACGGGTCCCCAAATT
AGAAAGATATATCAGCAACGCTGCCACGCCTACGAAGAGGCCAACCGAAT
CTCATTGGTCAGCAGTTTTATATCATCGCTATTTCTGGGCTCCGTCGCTC
CAATTGACTTCAGTGATGGTTCCGGCATGAATCTGCTGGACATCCGCAAG
AAGAACTGGTCCAAAGAATGCCTAAATGTTTGTGCACCCGATTTGGACAA
GCGCCTGGACATTCCGGTCAGTCCAAATTCGATTTTAGGCAACGTCTCTC
CGTACTTTGTGGAGCGCTTTAGTTTTTCGCCCGATTGCAAAGTGGCTGCT
AGCACGGGGGACAATCCTTCGGCGCTGTCTGGAATGTTGGTGGGCAGCAG
CTGGCTTACCATTTCCATGGGCACAAGTGACACCCTAATGATGAGCTTGA
AGGAGCCGCTAAACTGGGAGGAGGGTCATATACTCTGCCATCCAACTGAA
ACGGAAGAATTCATGGGCCTTCTATGTTTTAGAAATGCTTCATTGGTCCG
TGAGGAAATGAACAAGAAGACAACCGGCGGCGATTGGGATAAATTCAATG
AGTATCTCGACTCCACGCCCCGTGGAAACTTTGGGAACATGGCCGTGCAC
TTTAACGACATGGAAATCATTCCCAAGGCGCAGGGTATTCTGCGATGGAA
CAGGGAAATGGATCCCAGTTCCCCGGACGCGGCTAGGGGTGTAATCAAAT
TCAGCTCGCCCCAAATCGAAATTCGAGCCCTAGTTGAAGGTCAGATGCTG
CATCACCGGGCTGTGGCTGAAGACCTTGGCTACAAATTCGGACCCGAGAC
ACAAATCCTTGTCACAGGAGGCGCATCTGTTAACAAATCAATCCTGCAAA
CAATTGCCGATGTGTTCAATGCTCCCGTCCATATCCAGGATGAAGGATTT
GAGGCTGCCCTACTGGGAGCCGCTTATCGATCCGCCTACGCTCTGTACCT
TCAAGAGGCAGGTGATGGGGTGACGCCTCTCTGTTACCGAGATTATATCC
TAAGTCTGACAAGTAACAAACTGAGCCTTGTATGCGAACCACACAAGGAC
AGCGAGGAAATCTACGCTCCAATGCTACAACGATATCGCGAAATGGCGCG
CGTCCTGTCCAATCCTAACACATAAAAGCTTTCTAGACCAT

BS10970.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-RA 1659 CG3534-PA 1..1659 17..1675 8295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-RA 1979 CG3534-RA 142..1803 15..1676 8310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16997465..16998292 199..1026 4140 100 Plus
3R 32079331 3R 16999033..16999273 1436..1676 1205 100 Plus
3R 32079331 3R 16998350..16998572 1026..1248 1115 100 Plus
3R 32079331 3R 16998787..16998977 1249..1439 955 100 Plus
3R 32079331 3R 16997051..16997174 75..198 620 100 Plus
3R 32079331 3R 16996587..16996648 15..76 310 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:34:16 has no hits.

BS10970.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:15 Download gff for BS10970.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 138..1794 17..1673 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:24 Download gff for BS10970.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 144..1800 17..1673 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:41 Download gff for BS10970.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 144..1800 17..1673 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:41 Download gff for BS10970.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16998787..16998976 1249..1438 100 -> Plus
3R 16999036..16999270 1439..1673 100   Plus
3R 16996589..16996648 17..76 100 -> Plus
3R 16997053..16997174 77..198 100 -> Plus
3R 16997465..16998292 199..1026 100 -> Plus
3R 16998351..16998572 1027..1248 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:24 Download gff for BS10970.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12822311..12822370 17..76 100 -> Plus
arm_3R 12822775..12822896 77..198 100 -> Plus
arm_3R 12823187..12824014 199..1026 100 -> Plus
arm_3R 12824073..12824294 1027..1248 100 -> Plus
arm_3R 12824509..12824698 1249..1438 100 -> Plus
arm_3R 12824758..12824992 1439..1673 100   Plus

BS10970.pep Sequence

Translation from 16 to 1674

> BS10970.pep
MGPPKQLKRTFLGFDLSTQKLKAVLLGSSLEVVAAAEVKFDTDLPEFRTT
GGANAGSIKNEYFVQPVMWVKAMDIVLDRLVMQQADLSTVAAISGSGQQH
GSLYWSKHGINTLQNLDSEKFLHAQIDDSAFVVNRTPIWMDATTTKQCLE
MEMAVGGKLNMVELTGSKCYERFTGPQIRKIYQQRCHAYEEANRISLVSS
FISSLFLGSVAPIDFSDGSGMNLLDIRKKNWSKECLNVCAPDLDKRLDIP
VSPNSILGNVSPYFVERFSFSPDCKVAASTGDNPSALSGMLVGSSWLTIS
MGTSDTLMMSLKEPLNWEEGHILCHPTETEEFMGLLCFRNASLVREEMNK
KTTGGDWDKFNEYLDSTPRGNFGNMAVHFNDMEIIPKAQGILRWNREMDP
SSPDAARGVIKFSSPQIEIRALVEGQMLHHRAVAEDLGYKFGPETQILVT
GGASVNKSILQTIADVFNAPVHIQDEGFEAALLGAAYRSAYALYLQEAGD
GVTPLCYRDYILSLTSNKLSLVCEPHKDSEEIYAPMLQRYREMARVLSNP
NT*

BS10970.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-PA 552 CG3534-PA 1..552 1..552 2876 100 Plus
CG3544-PB 572 CG3544-PB 13..564 10..552 1335 45.7 Plus
CG3544-PA 572 CG3544-PA 13..564 10..552 1335 45.7 Plus