Clone Sequence Records
BS10973.3prime Sequence
738 bp (737 high quality bases) assembled on 2006-04-19
> BS10973.3prime
ATGGTCTAGAAAGCTTCTAGTCCTGACGCAGCGTCAGAGTTCGTACTTCA
ATTCCATCTTTGGTTATGATGTTGATCAGCACAGAGTCGCCGGTGTAGAT
GTCGCGCTCAGCGGCAGAGATGAAGGTGTCGGAGGCAACGCTCACGGCCC
GCTCCTTGGTTAACTTGATCTTGTCGGCGTCTTCCAAATTCATGTTCTTG
TGACCAATCTGGTTGTCCAGCACCGGTTGCAGCAGGGTGCCGGCAGTGCC
GCCGGCGCGGTATGTAGCCTTCTCGCAGTGACCGATGGGATCGTAGGAGT
AGACGACGCCCTTGCCCTCGTTGTCAATTCCAGCCAGAATGTTCGACACG
TAGTACGGGAAGAAGCGGCGATTGTACATGGCGATGGAGAGCATCTGGGC
CACGGCCTCAGTGGTCATGGTGCGCAGATGGGTATGCTCGTAGCTCTGCA
TGCGCACCTTAATCGATCCGGTCAACGAGAGCGTGTCCGCCCAGCAGCCT
GCGGAACCCAACACTGTCTGGGGCGAGAGTTTAAAGAGTTTACTCTGCGT
TCGCGAGTGAATGTTGTAGCCGCTGCTCAGGCGGGTGTCCGCTGCAATTA
CGGCAAAGTCATCTCCGGCGATGGCCACAATGGAGCCGCCATTGGACTCG
TAGGGCGAGAAATCAGGATGCTTCATGCCGGGCACCTGGTAGTCCGGGAA
TTGCTCAAAGCCCAATCTGCTCATGTCGACTGATAACT
BS10973.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4097-PA | 708 | Pros26-RA | 1..708 | 724..17 | 3540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:52:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta6-RA | 944 | CG4097-RA | 99..808 | 726..17 | 3550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16609536..16610155 | 17..636 | 3100 | 100 | Plus |
3L | 28110227 | 3L | 16610230..16610320 | 636..726 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:52:00 has no hits.
BS10973.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:18 Download gff for
BS10973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4097-PA | 1..708 | 17..724 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:37 Download gff for
BS10973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4097-PA | 1..708 | 17..724 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:58:30 Download gff for
BS10973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta6-RA | 93..811 | 12..732 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:19:05 Download gff for
BS10973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta6-RA | 93..811 | 12..732 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:19:05 Download gff for
BS10973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16609533..16610154 | 12..635 | 99 | <- | Plus |
3L | 16610230..16610324 | 636..732 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:58:30 Download gff for
BS10973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16602633..16603254 | 12..635 | 99 | <- | Plus |
arm_3L | 16603330..16603424 | 636..732 | 95 | | Plus |
BS10973.5prime Sequence
738 bp (737 high quality bases) assembled on 2006-04-19
> BS10973.5prime
GAAGTTATCAGTCGACATGAGCAGATTGGGCTTTGAGCAATTCCCGGACT
ACCAGGTGCCCGGCATGAAGCATCCTGATTTCTCGCCCTACGAGTCCAAT
GGCGGCTCCATTGTGGCCATCGCCGGAGATGACTTTGCCGTAATTGCAGC
GGACACCCGCCTGAGCAGCGGCTACAACATTCACTCGCGAACGCAGAGTA
AACTCTTTAAACTCTCGCCCCAGACAGTGTTGGGTTCCGCAGGCTGCTGG
GCGGACACGCTCTCGTTGACCGGATCGATTAAGGTGCGCATGCAGAGCTA
CGAGCATACCCATCTGCGCACCATGACCACTGAGGCCGTGGCCCAGATGC
TCTCCATCGCCATGTACAATCGCCGCTTCTTCCCGTACTACGTGTCGAAC
ATTCTGGCTGGAATTGACAACGAGGGCAAGGGCGTCGTCTACTCCTACGA
TCCCATCGGTCACTGCGAGAAGGCTACATACCGCGCCGGCGGCACTGCCG
GCACCCTGCTGCAACCGGTGCTGGACAACCAGATTGGTCACAAGAACATG
AATTTGGAAGACGCCGACAAGATCAAGTTAACCAAGGAGCGGGCCGTGAG
CGTTGCCTCCGACACCTTCATCTCTGCCGCTGAGCGCGACATCTACACCG
GCGACTCTGTGCTGATCAACATCATAACCAAAGATGGAATTGAAGTACGA
ACTCTGACGCTGCGTCAGGACTAGAAGCTTTCTAGACC
BS10973.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4097-PA | 708 | Pros26-RA | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta6-RA | 944 | CG4097-RA | 99..808 | 15..724 | 3550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16609536..16610155 | 724..105 | 3100 | 100 | Minus |
3L | 28110227 | 3L | 16610230..16610320 | 105..15 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:48:47 has no hits.
BS10973.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:19 Download gff for
BS10973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4097-PA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:39 Download gff for
BS10973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4097-PA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:43:04 Download gff for
BS10973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta6-RA | 93..811 | 9..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:31 Download gff for
BS10973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta6-RA | 93..811 | 9..729 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:31 Download gff for
BS10973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16609533..16610154 | 106..729 | 99 | <- | Minus |
3L | 16610230..16610324 | 9..105 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:43:04 Download gff for
BS10973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16602633..16603254 | 106..729 | 99 | <- | Minus |
arm_3L | 16603330..16603424 | 9..105 | 95 | | Minus |
BS10973.complete Sequence
740 bp assembled on 2006-11-01
> BS10973.complete
GAAGTTATCAGTCGACATGAGCAGATTGGGCTTTGAGCAATTCCCGGACT
ACCAGGTGCCCGGCATGAAGCATCCTGATTTCTCGCCCTACGAGTCCAAT
GGCGGCTCCATTGTGGCCATCGCCGGAGATGACTTTGCCGTAATTGCAGC
GGACACCCGCCTGAGCAGCGGCTACAACATTCACTCGCGAACGCAGAGTA
AACTCTTTAAACTCTCGCCCCAGACAGTGTTGGGTTCCGCAGGCTGCTGG
GCGGACACGCTCTCGTTGACCGGATCGATTAAGGTGCGCATGCAGAGCTA
CGAGCATACCCATCTGCGCACCATGACCACTGAGGCCGTGGCCCAGATGC
TCTCCATCGCCATGTACAATCGCCGCTTCTTCCCGTACTACGTGTCGAAC
ATTCTGGCTGGAATTGACAACGAGGGCAAGGGCGTCGTCTACTCCTACGA
TCCCATCGGTCACTGCGAGAAGGCTACATACCGCGCCGGCGGCACTGCCG
GCACCCTGCTGCAACCGGTGCTGGACAACCAGATTGGTCACAAGAACATG
AATTTGGAAGACGCCGACAAGATCAAGTTAACCAAGGAGCGGGCCGTGAG
CGTTGCCTCCGACACCTTCATCTCTGCCGCTGAGCGCGACATCTACACCG
GCGACTCTGTGCTGATCAACATCATAACCAAAGATGGAATTGAAGTACGA
ACTCTGACGCTGCGTCAGGACTAGAAGCTTTCTAGACCAT
BS10973.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta6-RA | 708 | CG4097-PA | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta6-RA | 944 | CG4097-RA | 99..808 | 15..724 | 3550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16609536..16610155 | 724..105 | 3100 | 100 | Minus |
3L | 28110227 | 3L | 16610230..16610320 | 105..15 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:56:48 has no hits.
BS10973.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:16 Download gff for
BS10973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros26-RA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:28 Download gff for
BS10973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros26-RA | 96..814 | 9..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:16 Download gff for
BS10973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta6-RA | 101..808 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:17 Download gff for
BS10973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros26-RA | 96..814 | 9..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:36 Download gff for
BS10973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta6-RA | 101..808 | 17..724 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:36 Download gff for
BS10973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16609536..16610154 | 106..724 | 100 | <- | Minus |
3L | 16610230..16610318 | 17..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:16 Download gff for
BS10973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16602636..16603254 | 106..724 | 100 | <- | Minus |
arm_3L | 16603330..16603418 | 17..105 | 100 | | Minus |
BS10973.pep Sequence
Translation from 16 to 723
> BS10973.pep
MSRLGFEQFPDYQVPGMKHPDFSPYESNGGSIVAIAGDDFAVIAADTRLS
SGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTGSIKVRMQSYEHTHL
RTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSYDPIGHC
EKATYRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKERAVSVASDT
FISAAERDIYTGDSVLINIITKDGIEVRTLTLRQD*
BS10973.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta6-PA | 235 | CG4097-PA | 1..235 | 1..235 | 1209 | 100 | Plus |
Prosbeta3-PA | 205 | CG11981-PA | 7..205 | 28..235 | 197 | 28.9 | Plus |
Prosbeta1-PA | 224 | CG8392-PA | 3..202 | 20..228 | 147 | 28 | Plus |