Clone BS10973 Report

Search the DGRC for BS10973

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:109
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptProsbeta6-RA
Protein status:BS10973.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10973.3prime Sequence

738 bp (737 high quality bases) assembled on 2006-04-19

> BS10973.3prime
ATGGTCTAGAAAGCTTCTAGTCCTGACGCAGCGTCAGAGTTCGTACTTCA
ATTCCATCTTTGGTTATGATGTTGATCAGCACAGAGTCGCCGGTGTAGAT
GTCGCGCTCAGCGGCAGAGATGAAGGTGTCGGAGGCAACGCTCACGGCCC
GCTCCTTGGTTAACTTGATCTTGTCGGCGTCTTCCAAATTCATGTTCTTG
TGACCAATCTGGTTGTCCAGCACCGGTTGCAGCAGGGTGCCGGCAGTGCC
GCCGGCGCGGTATGTAGCCTTCTCGCAGTGACCGATGGGATCGTAGGAGT
AGACGACGCCCTTGCCCTCGTTGTCAATTCCAGCCAGAATGTTCGACACG
TAGTACGGGAAGAAGCGGCGATTGTACATGGCGATGGAGAGCATCTGGGC
CACGGCCTCAGTGGTCATGGTGCGCAGATGGGTATGCTCGTAGCTCTGCA
TGCGCACCTTAATCGATCCGGTCAACGAGAGCGTGTCCGCCCAGCAGCCT
GCGGAACCCAACACTGTCTGGGGCGAGAGTTTAAAGAGTTTACTCTGCGT
TCGCGAGTGAATGTTGTAGCCGCTGCTCAGGCGGGTGTCCGCTGCAATTA
CGGCAAAGTCATCTCCGGCGATGGCCACAATGGAGCCGCCATTGGACTCG
TAGGGCGAGAAATCAGGATGCTTCATGCCGGGCACCTGGTAGTCCGGGAA
TTGCTCAAAGCCCAATCTGCTCATGTCGACTGATAACT

BS10973.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4097-PA 708 Pros26-RA 1..708 724..17 3540 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta6-RA 944 CG4097-RA 99..808 726..17 3550 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16609536..16610155 17..636 3100 100 Plus
3L 28110227 3L 16610230..16610320 636..726 455 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:52:00 has no hits.

BS10973.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:18 Download gff for BS10973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4097-PA 1..708 17..724 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:37 Download gff for BS10973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4097-PA 1..708 17..724 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:58:30 Download gff for BS10973.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta6-RA 93..811 12..732 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:19:05 Download gff for BS10973.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta6-RA 93..811 12..732 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:19:05 Download gff for BS10973.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16609533..16610154 12..635 99 <- Plus
3L 16610230..16610324 636..732 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:58:30 Download gff for BS10973.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16602633..16603254 12..635 99 <- Plus
arm_3L 16603330..16603424 636..732 95   Plus

BS10973.5prime Sequence

738 bp (737 high quality bases) assembled on 2006-04-19

> BS10973.5prime
GAAGTTATCAGTCGACATGAGCAGATTGGGCTTTGAGCAATTCCCGGACT
ACCAGGTGCCCGGCATGAAGCATCCTGATTTCTCGCCCTACGAGTCCAAT
GGCGGCTCCATTGTGGCCATCGCCGGAGATGACTTTGCCGTAATTGCAGC
GGACACCCGCCTGAGCAGCGGCTACAACATTCACTCGCGAACGCAGAGTA
AACTCTTTAAACTCTCGCCCCAGACAGTGTTGGGTTCCGCAGGCTGCTGG
GCGGACACGCTCTCGTTGACCGGATCGATTAAGGTGCGCATGCAGAGCTA
CGAGCATACCCATCTGCGCACCATGACCACTGAGGCCGTGGCCCAGATGC
TCTCCATCGCCATGTACAATCGCCGCTTCTTCCCGTACTACGTGTCGAAC
ATTCTGGCTGGAATTGACAACGAGGGCAAGGGCGTCGTCTACTCCTACGA
TCCCATCGGTCACTGCGAGAAGGCTACATACCGCGCCGGCGGCACTGCCG
GCACCCTGCTGCAACCGGTGCTGGACAACCAGATTGGTCACAAGAACATG
AATTTGGAAGACGCCGACAAGATCAAGTTAACCAAGGAGCGGGCCGTGAG
CGTTGCCTCCGACACCTTCATCTCTGCCGCTGAGCGCGACATCTACACCG
GCGACTCTGTGCTGATCAACATCATAACCAAAGATGGAATTGAAGTACGA
ACTCTGACGCTGCGTCAGGACTAGAAGCTTTCTAGACC

BS10973.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4097-PA 708 Pros26-RA 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta6-RA 944 CG4097-RA 99..808 15..724 3550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16609536..16610155 724..105 3100 100 Minus
3L 28110227 3L 16610230..16610320 105..15 455 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:48:47 has no hits.

BS10973.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:19 Download gff for BS10973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4097-PA 1..708 17..724 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:39 Download gff for BS10973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4097-PA 1..708 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:43:04 Download gff for BS10973.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta6-RA 93..811 9..729 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:31 Download gff for BS10973.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta6-RA 93..811 9..729 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:31 Download gff for BS10973.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16609533..16610154 106..729 99 <- Minus
3L 16610230..16610324 9..105 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:43:04 Download gff for BS10973.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16602633..16603254 106..729 99 <- Minus
arm_3L 16603330..16603424 9..105 95   Minus

BS10973.complete Sequence

740 bp assembled on 2006-11-01

> BS10973.complete
GAAGTTATCAGTCGACATGAGCAGATTGGGCTTTGAGCAATTCCCGGACT
ACCAGGTGCCCGGCATGAAGCATCCTGATTTCTCGCCCTACGAGTCCAAT
GGCGGCTCCATTGTGGCCATCGCCGGAGATGACTTTGCCGTAATTGCAGC
GGACACCCGCCTGAGCAGCGGCTACAACATTCACTCGCGAACGCAGAGTA
AACTCTTTAAACTCTCGCCCCAGACAGTGTTGGGTTCCGCAGGCTGCTGG
GCGGACACGCTCTCGTTGACCGGATCGATTAAGGTGCGCATGCAGAGCTA
CGAGCATACCCATCTGCGCACCATGACCACTGAGGCCGTGGCCCAGATGC
TCTCCATCGCCATGTACAATCGCCGCTTCTTCCCGTACTACGTGTCGAAC
ATTCTGGCTGGAATTGACAACGAGGGCAAGGGCGTCGTCTACTCCTACGA
TCCCATCGGTCACTGCGAGAAGGCTACATACCGCGCCGGCGGCACTGCCG
GCACCCTGCTGCAACCGGTGCTGGACAACCAGATTGGTCACAAGAACATG
AATTTGGAAGACGCCGACAAGATCAAGTTAACCAAGGAGCGGGCCGTGAG
CGTTGCCTCCGACACCTTCATCTCTGCCGCTGAGCGCGACATCTACACCG
GCGACTCTGTGCTGATCAACATCATAACCAAAGATGGAATTGAAGTACGA
ACTCTGACGCTGCGTCAGGACTAGAAGCTTTCTAGACCAT

BS10973.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta6-RA 708 CG4097-PA 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta6-RA 944 CG4097-RA 99..808 15..724 3550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16609536..16610155 724..105 3100 100 Minus
3L 28110227 3L 16610230..16610320 105..15 455 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:56:48 has no hits.

BS10973.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:16 Download gff for BS10973.complete
Subject Subject Range Query Range Percent Splice Strand
Pros26-RA 1..708 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:28 Download gff for BS10973.complete
Subject Subject Range Query Range Percent Splice Strand
Pros26-RA 96..814 9..729 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:16 Download gff for BS10973.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta6-RA 101..808 17..724 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:17 Download gff for BS10973.complete
Subject Subject Range Query Range Percent Splice Strand
Pros26-RA 96..814 9..729 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:36 Download gff for BS10973.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta6-RA 101..808 17..724 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:36 Download gff for BS10973.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16609536..16610154 106..724 100 <- Minus
3L 16610230..16610318 17..105 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:16 Download gff for BS10973.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16602636..16603254 106..724 100 <- Minus
arm_3L 16603330..16603418 17..105 100   Minus

BS10973.pep Sequence

Translation from 16 to 723

> BS10973.pep
MSRLGFEQFPDYQVPGMKHPDFSPYESNGGSIVAIAGDDFAVIAADTRLS
SGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTGSIKVRMQSYEHTHL
RTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSYDPIGHC
EKATYRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKERAVSVASDT
FISAAERDIYTGDSVLINIITKDGIEVRTLTLRQD*

BS10973.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta6-PA 235 CG4097-PA 1..235 1..235 1209 100 Plus
Prosbeta3-PA 205 CG11981-PA 7..205 28..235 197 28.9 Plus
Prosbeta1-PA 224 CG8392-PA 3..202 20..228 147 28 Plus