Clone Sequence Records
BS10975.3prime Sequence
911 bp (831 high quality bases) assembled on 2006-04-19
> BS10975.3prime
ATGGTCTAGAAAGCTTTCACTGGTAATGGGCGAGTGCCTCCTTGTTAATA
ACGCCCGCATAACTGGTGTACTTCGGCGAGGTTCCATTGAGGGCGATGAA
CTGCTCCGCCACCTCCACGGCAACACGGACCTGCGCCTCCGAAGTGCTCG
CGCCCAGATGCGGCGTGGCCACCACCTTGGGATGACTGATGAGGGCCTTG
GTGACCGCAGACTTTGGCGGCTCCTCGGGATAAACGTCGAAGGCCGCGCC
GGCCACTTTTCCGCTCTCAAGGCCATCGAGCACGGCCTGCTCGTCGATGA
TGCCGCCCCGGGCCACATTCACCACCTTAACGCCCTGTTTGCACTTGGCC
AGTGTCTCCGCCGATATGAGATTTCTGGTGGCTGGGATCAGCGGCGTGTG
CACGGTTATGTAGTCCGCCAGTGGCCAAATCTCCTCCAGCGTCATCTTCT
CGATGCCCGCCGCCTTGGCCTCAGCCTCCGTGGTGATGGGATCGTAACCA
ATAATCCGCATGCCCCAGGTCTTCATCCGAATGGCGACCTCGCGTCCAAT
GCGTCCCAATCCGAGAACGGCCAGGGTTTTTCCATACAGCTCTGTGCCGG
CATAGAGCTTCCTGTCCCAGCGACCCTCCTTCATGCTCTGACCGGCGGGG
ACGACGGGACGGGCCAGGGAGCCAATTAGGATGCACGTCAGCTCACAGGC
CGAAATGGAATTGCCACCCGGAGTGTTCAGGACAACGACATTTTGCGCTG
TGGCTGCGGGAACATCGATGTTGTCAACACCCGCCCCCGCACGGCCAACG
ACCTTCAGGCTGCCGGATCCGGCGGCCAAAACTTCCGCGGTTATTTTGGT
ATCCGAACGAACGATGGCTGCGTCGAAATTCTTAACTTCCTGACACAGTT
CCTCCACGGGG
BS10975.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6287-PA | 999 | CG6287-RA | 105..999 | 911..17 | 4475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:52:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6287-RA | 1284 | CG6287-RA | 225..1120 | 911..16 | 4480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11151670..11152026 | 16..372 | 1785 | 100 | Plus |
2L | 23513712 | 2L | 11152335..11152554 | 506..725 | 1100 | 100 | Plus |
2L | 23513712 | 2L | 11153410..11153566 | 726..882 | 785 | 100 | Plus |
2L | 23513712 | 2L | 11152139..11152276 | 373..510 | 675 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:52:19 has no hits.
BS10975.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:22 Download gff for
BS10975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-PA | 105..999 | 17..911 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:44 Download gff for
BS10975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-PA | 105..999 | 17..911 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:58:32 Download gff for
BS10975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 225..1122 | 13..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:20:13 Download gff for
BS10975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 225..1122 | 13..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:20:13 Download gff for
BS10975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11151668..11152026 | 13..372 | 99 | <- | Plus |
2L | 11152139..11152271 | 373..505 | 100 | <- | Plus |
2L | 11152335..11152554 | 506..725 | 100 | <- | Plus |
2L | 11153410..11153564 | 726..880 | 100 | <- | Plus |
2L | 11155083..11155113 | 881..911 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:58:32 Download gff for
BS10975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11151668..11152026 | 13..372 | 99 | <- | Plus |
arm_2L | 11152139..11152271 | 373..505 | 100 | <- | Plus |
arm_2L | 11152335..11152554 | 506..725 | 100 | <- | Plus |
arm_2L | 11153410..11153564 | 726..880 | 100 | <- | Plus |
arm_2L | 11155083..11155113 | 881..911 | 100 | | Plus |
BS10975.5prime Sequence
776 bp (775 high quality bases) assembled on 2006-04-19
> BS10975.5prime
GAAGTTATCAGTCGACATGCCCCTCAATATAAGAAAAGTGCTGGTCTGCG
ATGCTGTGGACAAATCCTGCGTGGAGCTGCTGGAACAGCATGGGATTAAG
GTTACCTACAAACTAAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA
GAATTTCGACGCAGCCATCGTTCGTTCGGATACCAAAATAACCGCGGAAG
TTTTGGCCGCCGGATCCGGCAGCCTGAAGGTCGTTGGCCGTGCGGGGGCG
GGTGTTGACAACATCGATGTTCCCGCAGCCACAGCGCAAAATGTCGTTGT
CCTGAACACTCCGGGTGGCAATTCCATTTCGGCCTGTGAGCTGACGTGCA
TCCTAATTGGCTCCCTGGCCCGTCCCGTCGTCCCCGCCGGTCAGAGCATG
AAGGAGGGTCGCTGGGACAGGAAGCTCTATGCCGGCACAGAGCTGTATGG
AAAAACCCTGGCCGTTCTCGGATTGGGACGCATTGGACGCGAGGTCGCCA
TTCGGATGAAGACCTGGGGCATGCGGATTATTGGTTACGATCCCATCACC
ACGGAGGCTGAGGCCAAGGCGGCGGGCATCGAGAAGATGACGCTGGAGGA
GATTTGGCCACTGGCGGACTACATAACCGTGCACACGCCGCTGATCCCAG
CCACCAGAAATCTCATATCGGCGGAGACACTGGCCAAGTGCAAACAGGGC
GTTAAGGTGGTGAATGTGGCCCGGGGCGGCATCATCGACGAGCAGGCCGT
GCTCGATGGCCTTGAGAGCGGAAAAG
BS10975.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6287-PA | 999 | CG6287-RA | 1..760 | 17..776 | 3800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6287-RA | 1284 | CG6287-RA | 121..880 | 17..776 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11152335..11152554 | 526..307 | 1100 | 100 | Minus |
2L | 23513712 | 2L | 11153410..11153566 | 306..150 | 785 | 100 | Minus |
2L | 23513712 | 2L | 11152139..11152276 | 659..522 | 675 | 99.3 | Minus |
2L | 23513712 | 2L | 11151910..11152026 | 776..660 | 585 | 100 | Minus |
2L | 23513712 | 2L | 11155516..11155601 | 102..17 | 430 | 100 | Minus |
2L | 23513712 | 2L | 11155083..11155136 | 151..98 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:57:26 has no hits.
BS10975.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:23 Download gff for
BS10975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-PA | 1..760 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:45 Download gff for
BS10975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-PA | 1..760 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:18:21 Download gff for
BS10975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 121..880 | 17..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:04:11 Download gff for
BS10975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 121..880 | 17..776 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:04:11 Download gff for
BS10975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11152139..11152271 | 527..659 | 100 | <- | Minus |
2L | 11155518..11155601 | 17..100 | 100 | | Minus |
2L | 11152335..11152554 | 307..526 | 100 | <- | Minus |
2L | 11153410..11153564 | 152..306 | 100 | <- | Minus |
2L | 11155083..11155133 | 101..151 | 100 | <- | Minus |
2L | 11151910..11152026 | 660..776 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:18:21 Download gff for
BS10975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11155083..11155133 | 101..151 | 100 | <- | Minus |
arm_2L | 11155518..11155601 | 17..100 | 100 | | Minus |
arm_2L | 11151910..11152026 | 660..776 | 100 | <- | Minus |
arm_2L | 11152139..11152271 | 527..659 | 100 | <- | Minus |
arm_2L | 11152335..11152554 | 307..526 | 100 | <- | Minus |
arm_2L | 11153410..11153564 | 152..306 | 100 | <- | Minus |
BS10975.complete Sequence
1031 bp assembled on 2006-11-01
GenBank Submission: FJ636748
> BS10975.complete
GAAGTTATCAGTCGACATGCCCCTCAATATAAGAAAAGTGCTGGTCTGCG
ATGCTGTGGACAAATCCTGCGTGGAGCTGCTGGAACAGCATGGGATTAAG
GTTACCTACAAACTAAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA
GAATTTCGACGCAGCCATCGTTCGTTCGGATACCAAAATAACCGCGGAAG
TTTTGGCCGCCGGATCCGGCAGCCTGAAGGTCGTTGGCCGTGCGGGGGCG
GGTGTTGACAACATCGATGTTCCCGCAGCCACAGCGCAAAATGTCGTTGT
CCTGAACACTCCGGGTGGCAATTCCATTTCGGCCTGTGAGCTGACGTGCA
TCCTAATTGGCTCCCTGGCCCGTCCCGTCGTCCCCGCCGGTCAGAGCATG
AAGGAGGGTCGCTGGGACAGGAAGCTCTATGCCGGCACAGAGCTGTATGG
AAAAACCCTGGCCGTTCTCGGATTGGGACGCATTGGACGCGAGGTCGCCA
TTCGGATGAAGACCTGGGGCATGCGGATTATTGGTTACGATCCCATCACC
ACGGAGGCTGAGGCCAAGGCGGCGGGCATCGAGAAGATGACGCTGGAGGA
GATTTGGCCACTGGCGGACTACATAACCGTGCACACGCCGCTGATCCCAG
CCACCAGAAATCTCATATCGGCGGAGACACTGGCCAAGTGCAAACAGGGC
GTTAAGGTGGTGAATGTGGCCCGGGGCGGCATCATCGACGAGCAGGCCGT
GCTCGATGGCCTTGAGAGCGGAAAAGTGGCCGGCGCGGCCTTCGACGTTT
ATCCCGAGGAGCCGCCAAAGTCTGCGGTCACCAAGGCCCTCATCAGTCAT
CCCAAGGTGGTGGCCACGCCGCATCTGGGCGCGAGCACTTCGGAGGCGCA
GGTCCGTGTTGCCGTGGAGGTGGCGGAGCAGTTCATCGCCCTCAATGGAA
CCTCGCCGAAGTACACCAGTTATGCGGGCGTTATTAACAAGGAGGCACTC
GCCCATTACCAGTGAAAGCTTTCTAGACCAT
BS10975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6287-RA | 999 | CG6287-PA | 1..999 | 17..1015 | 4995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6287-RA | 1284 | CG6287-RA | 121..1120 | 17..1016 | 5000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11151670..11152026 | 1016..660 | 1785 | 100 | Minus |
2L | 23513712 | 2L | 11152335..11152554 | 526..307 | 1100 | 100 | Minus |
2L | 23513712 | 2L | 11153410..11153566 | 306..150 | 785 | 100 | Minus |
2L | 23513712 | 2L | 11152139..11152276 | 659..522 | 675 | 99.3 | Minus |
2L | 23513712 | 2L | 11155516..11155601 | 102..17 | 430 | 100 | Minus |
2L | 23513712 | 2L | 11155083..11155136 | 151..98 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:26:42 has no hits.
BS10975.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:17 Download gff for
BS10975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 1..999 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:40 Download gff for
BS10975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 116..1117 | 17..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:02 Download gff for
BS10975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 121..1118 | 17..1014 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:18 Download gff for
BS10975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 116..1117 | 17..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:39 Download gff for
BS10975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 121..1118 | 17..1014 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:39 Download gff for
BS10975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11153410..11153564 | 152..306 | 100 | <- | Minus |
2L | 11155083..11155133 | 101..151 | 100 | <- | Minus |
2L | 11155518..11155601 | 17..100 | 100 | | Minus |
2L | 11152335..11152554 | 307..526 | 100 | <- | Minus |
2L | 11151672..11152026 | 660..1014 | 100 | <- | Minus |
2L | 11152139..11152271 | 527..659 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:02 Download gff for
BS10975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11151672..11152026 | 660..1014 | 100 | <- | Minus |
arm_2L | 11152139..11152271 | 527..659 | 100 | <- | Minus |
arm_2L | 11152335..11152554 | 307..526 | 100 | <- | Minus |
arm_2L | 11153410..11153564 | 152..306 | 100 | <- | Minus |
arm_2L | 11155083..11155133 | 101..151 | 100 | <- | Minus |
arm_2L | 11155518..11155601 | 17..100 | 100 | | Minus |
BS10975.pep Sequence
Translation from 16 to 1014
> BS10975.pep
MPLNIRKVLVCDAVDKSCVELLEQHGIKVTYKLKLPVEELCQEVKNFDAA
IVRSDTKITAEVLAAGSGSLKVVGRAGAGVDNIDVPAATAQNVVVLNTPG
GNSISACELTCILIGSLARPVVPAGQSMKEGRWDRKLYAGTELYGKTLAV
LGLGRIGREVAIRMKTWGMRIIGYDPITTEAEAKAAGIEKMTLEEIWPLA
DYITVHTPLIPATRNLISAETLAKCKQGVKVVNVARGGIIDEQAVLDGLE
SGKVAGAAFDVYPEEPPKSAVTKALISHPKVVATPHLGASTSEAQVRVAV
EVAEQFIALNGTSPKYTSYAGVINKEALAHYQ*
BS10975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6287-PA | 332 | CG6287-PA | 1..332 | 1..332 | 1675 | 100 | Plus |
CtBP-PI | 379 | CG7583-PI | 91..337 | 69..307 | 318 | 31.4 | Plus |
CtBP-PF | 383 | CG7583-PF | 91..337 | 69..307 | 318 | 31.4 | Plus |
CtBP-PG | 473 | CG7583-PG | 91..337 | 69..307 | 318 | 31.4 | Plus |
CtBP-PJ | 476 | CG7583-PJ | 91..337 | 69..307 | 318 | 31.4 | Plus |