Clone Sequence Records
BS10976.3prime Sequence
895 bp (780 high quality bases) assembled on 2006-04-19
> BS10976.3prime
ATGGTCTAGAAAGCTTTCAGATCGTCGCCCGCAGATCGAATTCGGGACTG
AAACTGGTCATCTGGTTGGGTTGCGGTGCGTTCGTCACCTGCTGCGCCGG
CCACACAATGCCCTCGATCCAGTCGACGAAGCTGGACACCCTGGTGTACA
CCGATGGCGGTCCACTGGCGCATCCCTGTCCCAGCGATGTGATGCCCACC
ACATAGCCAAGCAGGCCGTCCTGCATGAGCAGCGGTCCGCCGGAATCGCC
CTGGCAGGTGTCCCGCTCGCCGGTTATATCGCCGGCGCACATCTGCGTGC
CCAGCACGCCCTGAGCCAGCTGATCCTTTTGGTAGTGGTGCTGGCACTCC
TCGTTGCTCACGCTTTTCAGCGGCACCTTTAGCAGCTGAGCGGAGGATAG
ACCGGCGAAGCTGGTCTGCCCATAACCAATGGCCGTGACCAGCGTGTTGG
TCACCTCCTTCTGCGTCCAAATGCAAGTGGGCTTCAGTTCCGGCTTGGCC
GCCGTCTCCAGCTCAAGCAGCGCAATATCGTTGTATGCCGTGCTGGCACT
GTAATCCGGATGGATGATCACGCGCCGAATGCTTATATCCTCGCCCTCGG
TCAGGGTTAGATTGTCGCCACCGAGGCGCACCTGACTGGGTGGCTCACCG
CCCAAATCGGCACAGTGGGCTGCGGTCAGGACAAAGTTGTTGGCGATAAG
GGCGCCGCCGCATCGATAGTATATCCTCTGATCGAAGTTCGAACGCCAGC
CCAATGCGGCCATGAAGGGGAACTCCCGCGGGACGGGTGGGCATGCCGCC
CACCACCGACACGAAGAACTCGTCGATCTCTTTGACCTTTGACACCTTGT
TCAGTTCTTTGCAAGGCTGCTGGCTTGATCGGGTGACAATTGGAG
BS10976.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2056-PB | 1182 | CG2056-RB | 418..1182 | 781..17 | 3825 | 100 | Minus |
CG2056-PA | 1182 | CG2056-RA | 418..1182 | 781..17 | 3825 | 100 | Minus |
CG2056-PB | 1182 | CG2056-RB | 305..419 | 895..781 | 475 | 96.5 | Minus |
CG2056-PA | 1182 | CG2056-RA | 305..419 | 895..781 | 475 | 96.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spirit-RD | 1595 | CG2056-RD | 479..1356 | 895..17 | 4310 | 99.4 | Minus |
spirit-RC | 1546 | CG2056-RC | 430..1307 | 895..17 | 4310 | 99.4 | Minus |
spirit-RA | 1575 | CG2056-RA | 459..1336 | 895..17 | 4310 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8571338..8571969 | 17..648 | 3160 | 100 | Plus |
X | 23542271 | X | 8572091..8572305 | 648..863 | 1015 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:24:53 has no hits.
BS10976.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:24 Download gff for
BS10976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2056-PA | 305..1182 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:47 Download gff for
BS10976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2056-PA | 305..1182 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:26:53 Download gff for
BS10976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 459..1340 | 10..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:08 Download gff for
BS10976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 459..1340 | 10..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:08 Download gff for
BS10976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8571333..8571968 | 10..647 | 99 | <- | Plus |
X | 8572091..8572307 | 648..866 | 98 | <- | Plus |
X | 8572459..8572488 | 867..895 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:26:53 Download gff for
BS10976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8465366..8466001 | 10..647 | 99 | <- | Plus |
arm_X | 8466124..8466340 | 648..866 | 98 | <- | Plus |
arm_X | 8466492..8466521 | 867..895 | 93 | | Plus |
BS10976.5prime Sequence
793 bp (748 high quality bases) assembled on 2006-04-19
> BS10976.5prime
GAAGTTATCAGTCGACATGAGCATTCGGTCTACCCATTGCATACCCACTC
GTGTGTATCTGCACCTTCTGCTGGTGTCGCTACCACTTTTGGCAGTTCAC
GCCACGCCCGCCATAAGTCCGCAATCGTTGCGCGGCATCATCTTCCCCGT
CGAAACCTTCGATGAGTGCCAACTGGAGGACGTGGCGCGGACGAAGGGCA
CCTGCCGGCGCATGGAGGACTGTCCCAGTGCCCTGAACGGCTGGCTAGAG
CGGCGCGAATCGCCCAAGACCTGCTACTTTGTGAGGTTCGACCACTATGT
GTGCTGCGCCCCAGCTGTAGCTCCAATTGTCACCCGATCCAGCCAGCAGG
CCTGCAATGAACTGAACAAGGTGTCAAAGGTCAAAGAGATCGACGAGTTC
TTCGTGTCGGTGGTGGGCGGCATGCCCACCCGTCCGCGGGAGTTCCCCTT
CATGGCCGCATTGGGCTGGCGTTCGAACTTCGATCAGAGGATATACTATC
GATGCGGCGGCGCCCTTATCGCCAACAACTTTGTCCTGACCGCAGCCCAC
TGTGCCGATTTGGGCGGTGAGCCACCCAGTCAGGTGCGCCTCGGTGGCGA
CAATCTAACCCTGACCGAGGGCGAGGATATAAGCATTCGGCGCGTGATCA
TCCATCCGGATTACAGTGCCAGCACGGCATACAACGATATTGCGCTGCTT
GAGCTGGAGACGGCGGCCAAGCCGGAACTGAAGCCCACTTGCATTTGGAC
GCAGAAGGAGGTGACCAAAACGCTGGTCACGGCCATTGGTTAT
BS10976.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2056-PB | 1182 | CG2056-RB | 1..777 | 17..793 | 3860 | 99.8 | Plus |
CG2056-PA | 1182 | CG2056-RA | 1..777 | 17..793 | 3860 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:58:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spirit-RD | 1595 | CG2056-RD | 175..951 | 17..793 | 3870 | 99.9 | Plus |
spirit-RC | 1546 | CG2056-RC | 126..902 | 17..793 | 3870 | 99.9 | Plus |
spirit-RA | 1575 | CG2056-RA | 155..931 | 17..793 | 3870 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8572459..8572715 | 350..94 | 1285 | 100 | Minus |
X | 23542271 | X | 8571743..8571969 | 793..567 | 1120 | 99.6 | Minus |
X | 23542271 | X | 8572091..8572308 | 567..350 | 1090 | 100 | Minus |
X | 23542271 | X | 8572828..8572906 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:58:54 has no hits.
BS10976.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:25 Download gff for
BS10976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2056-PA | 1..777 | 17..793 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:48 Download gff for
BS10976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2056-PA | 1..777 | 17..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:35:11 Download gff for
BS10976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 152..931 | 10..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:33 Download gff for
BS10976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 152..931 | 10..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:33 Download gff for
BS10976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8571743..8571968 | 568..793 | 99 | <- | Minus |
X | 8572091..8572307 | 351..567 | 100 | <- | Minus |
X | 8572459..8572713 | 96..350 | 100 | <- | Minus |
X | 8572828..8572909 | 10..95 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:35:11 Download gff for
BS10976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8465776..8466001 | 568..793 | 99 | <- | Minus |
arm_X | 8466124..8466340 | 351..567 | 100 | <- | Minus |
arm_X | 8466492..8466746 | 96..350 | 100 | <- | Minus |
arm_X | 8466861..8466942 | 10..95 | 95 | | Minus |
BS10976.complete Sequence
1214 bp assembled on 2006-11-01
GenBank Submission: FJ636749
> BS10976.complete
GAAGTTATCAGTCGACATGAGCATTCGGTCTACCCATTGCATACCCACTC
GTGTGTATCTGCACCTTCTGCTGGTGTCGCTACCACTTTTGGCAGTTCAC
GCCACGCCCGCCATAAGTCCGCAATCGTTGCGCGGCATCATCTTCCCCGT
CGAAACCTTCGATGAGTGCCAACTGGAGGACGTGGCGCGGACGAAGGGCA
CCTGCCGGCGCATGGAGGACTGTCCCAGTGCCCTGAACGGCTGGCTAGAG
CGGCGCGAATCGCCCAAGACCTGCTACTTTGTGAGGTTCGACCACTATGT
GTGCTGCGCCCCAGCTGTAGCTCCAATTGTCACCCGATCCAGCCAGCAGG
CCTGCAATGAACTGAACAAGGTGTCAAAGGTCAAAGAGATCGACGAGTTC
TTCGTGTCGGTGGTGGGCGGCATGCCCACCCGTCCGCGGGAGTTCCCCTT
CATGGCCGCATTGGGCTGGCGTTCGAACTTCGATCAGAGGATATACTATC
GATGCGGCGGCGCCCTTATCGCCAACAACTTTGTCCTGACCGCAGCCCAC
TGTGCCGATTTGGGCGGTGAGCCACCCAGTCAGGTGCGCCTCGGTGGCGA
CAATCTAACCCTGACCGAGGGCGAGGATATAAGCATTCGGCGCGTGATCA
TCCATCCGGATTACAGTGCCAGCACGGCATACAACGATATTGCGCTGCTT
GAGCTGGAGACGGCGGCCAAGCCGGAACTGAAGCCCACTTGCATTTGGAC
GCAGAAGGAGGTGACCAACACGCTGGTCACGGCCATTGGTTATGGGCAGA
CCAGCTTCGCCGGTCTATCCTCCGCTCAGCTGCTAAAGGTGCCGCTGAAA
AGCGTGAGCAACGAGGAGTGCCAGCACCACTACCAAAAGGATCAGCTGGC
TCAGGGCGTGCTGGGCACGCAGATGTGCGCCGGCGATATAACCGGCGAGC
GGGACACCTGCCAGGGCGATTCCGGCGGACCGCTGCTCATGCAGGACGGC
CTGCTTGGCTATGTGGTGGGCATCACATCGCTGGGACAGGGATGCGCCAG
TGGACCGCCATCGGTGTACACCAGGGTGTCCAGCTTCGTCGACTGGATCG
AGGGCATTGTGTGGCCGGCGCAGCAGGTGACGAACGCACCGCAACCCAAC
CAGATGACCAGTTTCAGTCCCGAATTCGATCTGCGGGCGACGATCTGAAA
GCTTTCTAGACCAT
BS10976.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spirit-RD | 1182 | CG2056-PD | 1..1182 | 17..1198 | 5910 | 100 | Plus |
spirit-RC | 1182 | CG2056-PC | 1..1182 | 17..1198 | 5910 | 100 | Plus |
spirit-RA | 1182 | CG2056-PA | 1..1182 | 17..1198 | 5910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spirit-RD | 1595 | CG2056-RD | 175..1356 | 17..1198 | 5910 | 100 | Plus |
spirit-RC | 1546 | CG2056-RC | 126..1307 | 17..1198 | 5910 | 100 | Plus |
spirit-RA | 1575 | CG2056-RA | 155..1336 | 17..1198 | 5910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8571338..8571969 | 1198..567 | 3160 | 100 | Minus |
X | 23542271 | X | 8572459..8572715 | 350..94 | 1285 | 100 | Minus |
X | 23542271 | X | 8572091..8572308 | 567..350 | 1090 | 100 | Minus |
X | 23542271 | X | 8572828..8572906 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:19:57 has no hits.
BS10976.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:34 Download gff for
BS10976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 1..1182 | 17..1198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:58 Download gff for
BS10976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 152..1340 | 10..1205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:27 Download gff for
BS10976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 155..1335 | 17..1197 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:34 Download gff for
BS10976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 152..1340 | 10..1205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:05 Download gff for
BS10976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 155..1335 | 17..1197 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:05 Download gff for
BS10976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8571339..8571968 | 568..1197 | 100 | <- | Minus |
X | 8572091..8572307 | 351..567 | 100 | <- | Minus |
X | 8572459..8572713 | 96..350 | 100 | <- | Minus |
X | 8572828..8572906 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:27 Download gff for
BS10976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8465372..8466001 | 568..1197 | 100 | <- | Minus |
arm_X | 8466124..8466340 | 351..567 | 100 | <- | Minus |
arm_X | 8466492..8466746 | 96..350 | 100 | <- | Minus |
arm_X | 8466861..8466939 | 17..95 | 100 | | Minus |
BS10976.pep Sequence
Translation from 16 to 1197
> BS10976.pep
MSIRSTHCIPTRVYLHLLLVSLPLLAVHATPAISPQSLRGIIFPVETFDE
CQLEDVARTKGTCRRMEDCPSALNGWLERRESPKTCYFVRFDHYVCCAPA
VAPIVTRSSQQACNELNKVSKVKEIDEFFVSVVGGMPTRPREFPFMAALG
WRSNFDQRIYYRCGGALIANNFVLTAAHCADLGGEPPSQVRLGGDNLTLT
EGEDISIRRVIIHPDYSASTAYNDIALLELETAAKPELKPTCIWTQKEVT
NTLVTAIGYGQTSFAGLSSAQLLKVPLKSVSNEECQHHYQKDQLAQGVLG
TQMCAGDITGERDTCQGDSGGPLLMQDGLLGYVVGITSLGQGCASGPPSV
YTRVSSFVDWIEGIVWPAQQVTNAPQPNQMTSFSPEFDLRATI*
BS10976.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spirit-PD | 393 | CG2056-PD | 1..393 | 1..393 | 2080 | 100 | Plus |
spirit-PC | 393 | CG2056-PC | 1..393 | 1..393 | 2080 | 100 | Plus |
spirit-PA | 393 | CG2056-PA | 1..393 | 1..393 | 2080 | 100 | Plus |
spirit-PB | 393 | CG2056-PB | 1..393 | 1..393 | 2080 | 100 | Plus |
CG11668-PA | 398 | CG11668-PA | 9..398 | 12..367 | 572 | 35.8 | Plus |