Clone BS10976 Report

Search the DGRC for BS10976

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:109
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptspirit-RA
Protein status:BS10976.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10976.3prime Sequence

895 bp (780 high quality bases) assembled on 2006-04-19

> BS10976.3prime
ATGGTCTAGAAAGCTTTCAGATCGTCGCCCGCAGATCGAATTCGGGACTG
AAACTGGTCATCTGGTTGGGTTGCGGTGCGTTCGTCACCTGCTGCGCCGG
CCACACAATGCCCTCGATCCAGTCGACGAAGCTGGACACCCTGGTGTACA
CCGATGGCGGTCCACTGGCGCATCCCTGTCCCAGCGATGTGATGCCCACC
ACATAGCCAAGCAGGCCGTCCTGCATGAGCAGCGGTCCGCCGGAATCGCC
CTGGCAGGTGTCCCGCTCGCCGGTTATATCGCCGGCGCACATCTGCGTGC
CCAGCACGCCCTGAGCCAGCTGATCCTTTTGGTAGTGGTGCTGGCACTCC
TCGTTGCTCACGCTTTTCAGCGGCACCTTTAGCAGCTGAGCGGAGGATAG
ACCGGCGAAGCTGGTCTGCCCATAACCAATGGCCGTGACCAGCGTGTTGG
TCACCTCCTTCTGCGTCCAAATGCAAGTGGGCTTCAGTTCCGGCTTGGCC
GCCGTCTCCAGCTCAAGCAGCGCAATATCGTTGTATGCCGTGCTGGCACT
GTAATCCGGATGGATGATCACGCGCCGAATGCTTATATCCTCGCCCTCGG
TCAGGGTTAGATTGTCGCCACCGAGGCGCACCTGACTGGGTGGCTCACCG
CCCAAATCGGCACAGTGGGCTGCGGTCAGGACAAAGTTGTTGGCGATAAG
GGCGCCGCCGCATCGATAGTATATCCTCTGATCGAAGTTCGAACGCCAGC
CCAATGCGGCCATGAAGGGGAACTCCCGCGGGACGGGTGGGCATGCCGCC
CACCACCGACACGAAGAACTCGTCGATCTCTTTGACCTTTGACACCTTGT
TCAGTTCTTTGCAAGGCTGCTGGCTTGATCGGGTGACAATTGGAG

BS10976.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2056-PB 1182 CG2056-RB 418..1182 781..17 3825 100 Minus
CG2056-PA 1182 CG2056-RA 418..1182 781..17 3825 100 Minus
CG2056-PB 1182 CG2056-RB 305..419 895..781 475 96.5 Minus
CG2056-PA 1182 CG2056-RA 305..419 895..781 475 96.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
spirit-RD 1595 CG2056-RD 479..1356 895..17 4310 99.4 Minus
spirit-RC 1546 CG2056-RC 430..1307 895..17 4310 99.4 Minus
spirit-RA 1575 CG2056-RA 459..1336 895..17 4310 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8571338..8571969 17..648 3160 100 Plus
X 23542271 X 8572091..8572305 648..863 1015 99.1 Plus
Blast to na_te.dros performed on 2015-02-10 18:24:53 has no hits.

BS10976.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:24 Download gff for BS10976.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2056-PA 305..1182 17..895 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:47 Download gff for BS10976.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2056-PA 305..1182 17..895 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:26:53 Download gff for BS10976.3prime
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 459..1340 10..895 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:08 Download gff for BS10976.3prime
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 459..1340 10..895 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:08 Download gff for BS10976.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8571333..8571968 10..647 99 <- Plus
X 8572091..8572307 648..866 98 <- Plus
X 8572459..8572488 867..895 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:26:53 Download gff for BS10976.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8465366..8466001 10..647 99 <- Plus
arm_X 8466124..8466340 648..866 98 <- Plus
arm_X 8466492..8466521 867..895 93   Plus

BS10976.5prime Sequence

793 bp (748 high quality bases) assembled on 2006-04-19

> BS10976.5prime
GAAGTTATCAGTCGACATGAGCATTCGGTCTACCCATTGCATACCCACTC
GTGTGTATCTGCACCTTCTGCTGGTGTCGCTACCACTTTTGGCAGTTCAC
GCCACGCCCGCCATAAGTCCGCAATCGTTGCGCGGCATCATCTTCCCCGT
CGAAACCTTCGATGAGTGCCAACTGGAGGACGTGGCGCGGACGAAGGGCA
CCTGCCGGCGCATGGAGGACTGTCCCAGTGCCCTGAACGGCTGGCTAGAG
CGGCGCGAATCGCCCAAGACCTGCTACTTTGTGAGGTTCGACCACTATGT
GTGCTGCGCCCCAGCTGTAGCTCCAATTGTCACCCGATCCAGCCAGCAGG
CCTGCAATGAACTGAACAAGGTGTCAAAGGTCAAAGAGATCGACGAGTTC
TTCGTGTCGGTGGTGGGCGGCATGCCCACCCGTCCGCGGGAGTTCCCCTT
CATGGCCGCATTGGGCTGGCGTTCGAACTTCGATCAGAGGATATACTATC
GATGCGGCGGCGCCCTTATCGCCAACAACTTTGTCCTGACCGCAGCCCAC
TGTGCCGATTTGGGCGGTGAGCCACCCAGTCAGGTGCGCCTCGGTGGCGA
CAATCTAACCCTGACCGAGGGCGAGGATATAAGCATTCGGCGCGTGATCA
TCCATCCGGATTACAGTGCCAGCACGGCATACAACGATATTGCGCTGCTT
GAGCTGGAGACGGCGGCCAAGCCGGAACTGAAGCCCACTTGCATTTGGAC
GCAGAAGGAGGTGACCAAAACGCTGGTCACGGCCATTGGTTAT

BS10976.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2056-PB 1182 CG2056-RB 1..777 17..793 3860 99.8 Plus
CG2056-PA 1182 CG2056-RA 1..777 17..793 3860 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
spirit-RD 1595 CG2056-RD 175..951 17..793 3870 99.9 Plus
spirit-RC 1546 CG2056-RC 126..902 17..793 3870 99.9 Plus
spirit-RA 1575 CG2056-RA 155..931 17..793 3870 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8572459..8572715 350..94 1285 100 Minus
X 23542271 X 8571743..8571969 793..567 1120 99.6 Minus
X 23542271 X 8572091..8572308 567..350 1090 100 Minus
X 23542271 X 8572828..8572906 95..17 395 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:58:54 has no hits.

BS10976.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:25 Download gff for BS10976.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2056-PA 1..777 17..793 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:48 Download gff for BS10976.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2056-PA 1..777 17..793 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:35:11 Download gff for BS10976.5prime
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 152..931 10..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:33 Download gff for BS10976.5prime
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 152..931 10..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:33 Download gff for BS10976.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8571743..8571968 568..793 99 <- Minus
X 8572091..8572307 351..567 100 <- Minus
X 8572459..8572713 96..350 100 <- Minus
X 8572828..8572909 10..95 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:35:11 Download gff for BS10976.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8465776..8466001 568..793 99 <- Minus
arm_X 8466124..8466340 351..567 100 <- Minus
arm_X 8466492..8466746 96..350 100 <- Minus
arm_X 8466861..8466942 10..95 95   Minus

BS10976.complete Sequence

1214 bp assembled on 2006-11-01

GenBank Submission: FJ636749

> BS10976.complete
GAAGTTATCAGTCGACATGAGCATTCGGTCTACCCATTGCATACCCACTC
GTGTGTATCTGCACCTTCTGCTGGTGTCGCTACCACTTTTGGCAGTTCAC
GCCACGCCCGCCATAAGTCCGCAATCGTTGCGCGGCATCATCTTCCCCGT
CGAAACCTTCGATGAGTGCCAACTGGAGGACGTGGCGCGGACGAAGGGCA
CCTGCCGGCGCATGGAGGACTGTCCCAGTGCCCTGAACGGCTGGCTAGAG
CGGCGCGAATCGCCCAAGACCTGCTACTTTGTGAGGTTCGACCACTATGT
GTGCTGCGCCCCAGCTGTAGCTCCAATTGTCACCCGATCCAGCCAGCAGG
CCTGCAATGAACTGAACAAGGTGTCAAAGGTCAAAGAGATCGACGAGTTC
TTCGTGTCGGTGGTGGGCGGCATGCCCACCCGTCCGCGGGAGTTCCCCTT
CATGGCCGCATTGGGCTGGCGTTCGAACTTCGATCAGAGGATATACTATC
GATGCGGCGGCGCCCTTATCGCCAACAACTTTGTCCTGACCGCAGCCCAC
TGTGCCGATTTGGGCGGTGAGCCACCCAGTCAGGTGCGCCTCGGTGGCGA
CAATCTAACCCTGACCGAGGGCGAGGATATAAGCATTCGGCGCGTGATCA
TCCATCCGGATTACAGTGCCAGCACGGCATACAACGATATTGCGCTGCTT
GAGCTGGAGACGGCGGCCAAGCCGGAACTGAAGCCCACTTGCATTTGGAC
GCAGAAGGAGGTGACCAACACGCTGGTCACGGCCATTGGTTATGGGCAGA
CCAGCTTCGCCGGTCTATCCTCCGCTCAGCTGCTAAAGGTGCCGCTGAAA
AGCGTGAGCAACGAGGAGTGCCAGCACCACTACCAAAAGGATCAGCTGGC
TCAGGGCGTGCTGGGCACGCAGATGTGCGCCGGCGATATAACCGGCGAGC
GGGACACCTGCCAGGGCGATTCCGGCGGACCGCTGCTCATGCAGGACGGC
CTGCTTGGCTATGTGGTGGGCATCACATCGCTGGGACAGGGATGCGCCAG
TGGACCGCCATCGGTGTACACCAGGGTGTCCAGCTTCGTCGACTGGATCG
AGGGCATTGTGTGGCCGGCGCAGCAGGTGACGAACGCACCGCAACCCAAC
CAGATGACCAGTTTCAGTCCCGAATTCGATCTGCGGGCGACGATCTGAAA
GCTTTCTAGACCAT

BS10976.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
spirit-RD 1182 CG2056-PD 1..1182 17..1198 5910 100 Plus
spirit-RC 1182 CG2056-PC 1..1182 17..1198 5910 100 Plus
spirit-RA 1182 CG2056-PA 1..1182 17..1198 5910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
spirit-RD 1595 CG2056-RD 175..1356 17..1198 5910 100 Plus
spirit-RC 1546 CG2056-RC 126..1307 17..1198 5910 100 Plus
spirit-RA 1575 CG2056-RA 155..1336 17..1198 5910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8571338..8571969 1198..567 3160 100 Minus
X 23542271 X 8572459..8572715 350..94 1285 100 Minus
X 23542271 X 8572091..8572308 567..350 1090 100 Minus
X 23542271 X 8572828..8572906 95..17 395 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:19:57 has no hits.

BS10976.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:34 Download gff for BS10976.complete
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 1..1182 17..1198 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:58 Download gff for BS10976.complete
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 152..1340 10..1205 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:27 Download gff for BS10976.complete
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 155..1335 17..1197 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:34 Download gff for BS10976.complete
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 152..1340 10..1205 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:05 Download gff for BS10976.complete
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 155..1335 17..1197 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:05 Download gff for BS10976.complete
Subject Subject Range Query Range Percent Splice Strand
X 8571339..8571968 568..1197 100 <- Minus
X 8572091..8572307 351..567 100 <- Minus
X 8572459..8572713 96..350 100 <- Minus
X 8572828..8572906 17..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:27 Download gff for BS10976.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8465372..8466001 568..1197 100 <- Minus
arm_X 8466124..8466340 351..567 100 <- Minus
arm_X 8466492..8466746 96..350 100 <- Minus
arm_X 8466861..8466939 17..95 100   Minus

BS10976.pep Sequence

Translation from 16 to 1197

> BS10976.pep
MSIRSTHCIPTRVYLHLLLVSLPLLAVHATPAISPQSLRGIIFPVETFDE
CQLEDVARTKGTCRRMEDCPSALNGWLERRESPKTCYFVRFDHYVCCAPA
VAPIVTRSSQQACNELNKVSKVKEIDEFFVSVVGGMPTRPREFPFMAALG
WRSNFDQRIYYRCGGALIANNFVLTAAHCADLGGEPPSQVRLGGDNLTLT
EGEDISIRRVIIHPDYSASTAYNDIALLELETAAKPELKPTCIWTQKEVT
NTLVTAIGYGQTSFAGLSSAQLLKVPLKSVSNEECQHHYQKDQLAQGVLG
TQMCAGDITGERDTCQGDSGGPLLMQDGLLGYVVGITSLGQGCASGPPSV
YTRVSSFVDWIEGIVWPAQQVTNAPQPNQMTSFSPEFDLRATI*

BS10976.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
spirit-PD 393 CG2056-PD 1..393 1..393 2080 100 Plus
spirit-PC 393 CG2056-PC 1..393 1..393 2080 100 Plus
spirit-PA 393 CG2056-PA 1..393 1..393 2080 100 Plus
spirit-PB 393 CG2056-PB 1..393 1..393 2080 100 Plus
CG11668-PA 398 CG11668-PA 9..398 12..367 572 35.8 Plus