Clone BS10978 Report

Search the DGRC for BS10978

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:109
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG6136-RB
Protein status:BS10978.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10978.3prime Sequence

822 bp (815 high quality bases) assembled on 2006-04-19

> BS10978.3prime
ATGGTCTAGAAAGCTTTCAGCGGGAGCTCATCGCTTTCGCAATGGTAACC
ATCTTTCGCACCACGATGGAGTTGGTTCCGTAGTAGGGGTCCACGTCCTG
TTTGCCCATGGTCACGTCACACTCCATTCGCGTGGTGGTGGGCGCCACGT
AGTCCTCGCCAGCCGTGTCCAGGGCGGAAGCGTGAAACTCTAGGCAGCGA
CTGACCGTGAGGATCTCCTCCAGGTTGGACACCTTTATGCCGGCGCCGGG
CATAACTATAAAGTCTCTTTGATGTTTGGCTATCAGCTGTGCCAGGCAAT
CTACGCCATCGGCAGCCGTGGGTCGGAATCCGCTGCTCAGCAGACGTCGG
AAACCTAGTTCCCGCAACATGTCGACATTCTCGTCCATGGACTTCTGGTC
GGTGAGGTCGAAGGCGCGGTGAAAGGTCACTGGCAGACCACCGGACGCCA
GCAAAACGTGCCGACACTGATCCACGTTGATGCTGCGATCCGGATTCAGG
GATCCGAAAACGAAGCCATCGGCACCGTTTTCCCGCAGCAAGTCCATGTC
CGTGAGCAGGGCGCACATCTCCTCGTCGCTGTAGACAAAGTCGGTGCCCC
GCCGTGGCCTCAGCATGCAGTAAATGGGCATTGTGAGCGTTTCCTTAATA
GTTTTTAGGGTACCGATGCTGGGTGTCAAGCCACCTTCGCCCAATGCCGA
ACACAGTTCAATGCGTGAAGCTCCGCCTTCCTCGGCGGCAAAAGCCGATC
GTATGGAGTCCACGCAGACCTCCAGCTTGATATCGTGGTTGGACATTTCT
CTTATCATGTCGACTGATAACT

BS10978.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-PA 792 CG6136-RA 1..792 808..17 3960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-RD 2071 CG6136-RD 400..1193 808..15 3970 100 Minus
CG6136-RC 2177 CG6136-RC 400..1193 808..15 3970 100 Minus
CG6136-RB 1398 CG6136-RB 400..1193 808..15 3970 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15371020..15371813 15..808 3970 100 Plus
Blast to na_te.dros performed on 2015-02-06 17:59:45 has no hits.

BS10978.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:28 Download gff for BS10978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-PA 1..792 17..808 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:53 Download gff for BS10978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-PA 1..792 17..808 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:36:29 Download gff for BS10978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-RB 392..1193 15..820 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:39:13 Download gff for BS10978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-RB 392..1193 15..820 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:39:13 Download gff for BS10978.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15371020..15371820 15..820 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:36:29 Download gff for BS10978.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11196742..11197542 15..820 99   Plus

BS10978.5prime Sequence

826 bp (758 high quality bases) assembled on 2006-04-19

> BS10978.5prime
GAAGTTATCAGTCGACATGATAAGAGAAATGTCCAACCACGATATCAAGC
TGGAGGTCTGCGTGGACTCCATACGATCGGCTTTTGCCGCCGAGGAAGGC
GGAGCTTCACGCATTGAACTGTGTTCGGCATTGGGCGAAGGTGGCTTGAC
ACCCAGCATCGGTACCCTAAAAACTATTAAGGAAACGCTCACAATGCCCA
TTTACTGCATGCTGAGGCCACGGCGGGGCACCGACTTTGTCTACAGCGAC
GAGGAGATGTGCGCCCTGCTCACGGACATGGACTTGCTGCGGGAAAACGG
TGCCGATGGCTTCGTTTTCGGATCCCTGAATCCGGATCGCAGCATCAACG
TGGATCAGTGTCGGCACGTTTTGCTGGCGTCCGGTGGTCTGCCAGTGACC
TTTCACCGCGCCTTCGACCTCACCGACCAGAAGTCCATGGACGAGAATGT
CGACATGTTGCGGGAACTAGGTTTCCGACGTCTGCTGAGCAGCGGATTCC
GACCCACGGCTGCCGATGGCGTAGATTGCCTGGCACAGCTGATAGCCAAA
CATCAAAGAGACTTTATAGTTATGCCCGGCGCCGGCATAAAGGTGTCCAA
CCTGGAGGAGATCCTCACGGTCAGTCGCTGCCTAGAGTTTCACGCTTCCG
CCCTGGACACGGCTGGCGAGGACTACGTGGCGCCCACCACCACGCGAATG
GAGTGTGACGTGACCATGGGCAAACAGGACGTGGACCCCTACTACGGAAC
CAACTCCATCGGGGTGCGAAAGATGGTTACCATTGCGAAAGCGATGAGCT
CCCGCTGAAAGCTTTCTAGAACATTC

BS10978.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-PA 792 CG6136-RA 1..792 17..808 3935 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-RD 2071 CG6136-RD 400..1193 17..810 3955 99.9 Plus
CG6136-RC 2177 CG6136-RC 400..1193 17..810 3955 99.9 Plus
CG6136-RB 1398 CG6136-RB 400..1193 17..810 3955 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15371020..15371813 810..17 3955 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 21:29:43 has no hits.

BS10978.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:29 Download gff for BS10978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-PA 1..792 17..808 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:55 Download gff for BS10978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-PA 1..792 17..808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:29:55 Download gff for BS10978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-RB 392..1193 5..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:48 Download gff for BS10978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-RB 392..1193 5..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:48 Download gff for BS10978.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15371020..15371820 5..810 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:29:55 Download gff for BS10978.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11196742..11197542 5..810 99   Minus

BS10978.complete Sequence

824 bp assembled on 2006-11-01

GenBank Submission: FJ636750

> BS10978.complete
GAAGTTATCAGTCGACATGATAAGAGAAATGTCCAACCACGATATCAAGC
TGGAGGTCTGCGTGGACTCCATACGATCGGCTTTTGCCGCCGAGGAAGGC
GGAGCTTCACGCATTGAACTGTGTTCGGCATTGGGCGAAGGTGGCTTGAC
ACCCAGCATCGGTACCCTAAAAACTATTAAGGAAACGCTCACAATGCCCA
TTTACTGCATGCTGAGGCCACGGCGGGGCACCGACTTTGTCTACAGCGAC
GAGGAGATGTGCGCCCTGCTCACGGACATGGACTTGCTGCGGGAAAACGG
TGCCGATGGCTTCGTTTTCGGATCCCTGAATCCGGATCGCAGCATCAACG
TGGATCAGTGTCGGCACGTTTTGCTGGCGTCCGGTGGTCTGCCAGTGACC
TTTCACCGCGCCTTCGACCTCACCGACCAGAAGTCCATGGACGAGAATGT
CGACATGTTGCGGGAACTAGGTTTCCGACGTCTGCTGAGCAGCGGATTCC
GACCCACGGCTGCCGATGGCGTAGATTGCCTGGCACAGCTGATAGCCAAA
CATCAAAGAGACTTTATAGTTATGCCCGGCGCCGGCATAAAGGTGTCCAA
CCTGGAGGAGATCCTCACGGTCAGTCGCTGCCTAGAGTTTCACGCTTCCG
CCCTGGACACGGCTGGCGAGGACTACGTGGCGCCCACCACCACGCGAATG
GAGTGTGACGTGACCATGGGCAAACAGGACGTGGACCCCTACTACGGAAC
CAACTCCATCGTGGTGCGAAAGATGGTTACCATTGCGAAAGCGATGAGCT
CCCGCTGAAAGCTTTCTAGACCAT

BS10978.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-RD 792 CG6136-PD 1..792 17..808 3960 100 Plus
CG6136-RC 792 CG6136-PC 1..792 17..808 3960 100 Plus
CG6136-RB 792 CG6136-PB 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-RD 2071 CG6136-RD 400..1193 17..810 3970 100 Plus
CG6136-RC 2177 CG6136-RC 400..1193 17..810 3970 100 Plus
CG6136-RB 1398 CG6136-RB 400..1193 17..810 3970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15371020..15371813 810..17 3970 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:07:10 has no hits.

BS10978.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:35 Download gff for BS10978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:00 Download gff for BS10978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RA 356..1157 5..810 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:28 Download gff for BS10978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RB 400..1190 17..807 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:36 Download gff for BS10978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RA 356..1157 5..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:56 Download gff for BS10978.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RB 400..1190 17..807 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:56 Download gff for BS10978.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15371023..15371813 17..807 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:28 Download gff for BS10978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11196745..11197535 17..807 100   Minus

BS10978.pep Sequence

Translation from 16 to 807

> BS10978.pep
MIREMSNHDIKLEVCVDSIRSAFAAEEGGASRIELCSALGEGGLTPSIGT
LKTIKETLTMPIYCMLRPRRGTDFVYSDEEMCALLTDMDLLRENGADGFV
FGSLNPDRSINVDQCRHVLLASGGLPVTFHRAFDLTDQKSMDENVDMLRE
LGFRRLLSSGFRPTAADGVDCLAQLIAKHQRDFIVMPGAGIKVSNLEEIL
TVSRCLEFHASALDTAGEDYVAPTTTRMECDVTMGKQDVDPYYGTNSIVV
RKMVTIAKAMSSR*

BS10978.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-PD 263 CG6136-PD 1..263 1..263 1351 100 Plus
CG6136-PC 263 CG6136-PC 1..263 1..263 1351 100 Plus
CG6136-PB 263 CG6136-PB 1..263 1..263 1351 100 Plus