Clone Sequence Records
BS10978.3prime Sequence
822 bp (815 high quality bases) assembled on 2006-04-19
> BS10978.3prime
ATGGTCTAGAAAGCTTTCAGCGGGAGCTCATCGCTTTCGCAATGGTAACC
ATCTTTCGCACCACGATGGAGTTGGTTCCGTAGTAGGGGTCCACGTCCTG
TTTGCCCATGGTCACGTCACACTCCATTCGCGTGGTGGTGGGCGCCACGT
AGTCCTCGCCAGCCGTGTCCAGGGCGGAAGCGTGAAACTCTAGGCAGCGA
CTGACCGTGAGGATCTCCTCCAGGTTGGACACCTTTATGCCGGCGCCGGG
CATAACTATAAAGTCTCTTTGATGTTTGGCTATCAGCTGTGCCAGGCAAT
CTACGCCATCGGCAGCCGTGGGTCGGAATCCGCTGCTCAGCAGACGTCGG
AAACCTAGTTCCCGCAACATGTCGACATTCTCGTCCATGGACTTCTGGTC
GGTGAGGTCGAAGGCGCGGTGAAAGGTCACTGGCAGACCACCGGACGCCA
GCAAAACGTGCCGACACTGATCCACGTTGATGCTGCGATCCGGATTCAGG
GATCCGAAAACGAAGCCATCGGCACCGTTTTCCCGCAGCAAGTCCATGTC
CGTGAGCAGGGCGCACATCTCCTCGTCGCTGTAGACAAAGTCGGTGCCCC
GCCGTGGCCTCAGCATGCAGTAAATGGGCATTGTGAGCGTTTCCTTAATA
GTTTTTAGGGTACCGATGCTGGGTGTCAAGCCACCTTCGCCCAATGCCGA
ACACAGTTCAATGCGTGAAGCTCCGCCTTCCTCGGCGGCAAAAGCCGATC
GTATGGAGTCCACGCAGACCTCCAGCTTGATATCGTGGTTGGACATTTCT
CTTATCATGTCGACTGATAACT
BS10978.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6136-PA | 792 | CG6136-RA | 1..792 | 808..17 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6136-RD | 2071 | CG6136-RD | 400..1193 | 808..15 | 3970 | 100 | Minus |
CG6136-RC | 2177 | CG6136-RC | 400..1193 | 808..15 | 3970 | 100 | Minus |
CG6136-RB | 1398 | CG6136-RB | 400..1193 | 808..15 | 3970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:59:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15371020..15371813 | 15..808 | 3970 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 17:59:45 has no hits.
BS10978.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:28 Download gff for
BS10978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:53 Download gff for
BS10978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:36:29 Download gff for
BS10978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RB | 392..1193 | 15..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:39:13 Download gff for
BS10978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RB | 392..1193 | 15..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:39:13 Download gff for
BS10978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15371020..15371820 | 15..820 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:36:29 Download gff for
BS10978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11196742..11197542 | 15..820 | 99 | | Plus |
BS10978.5prime Sequence
826 bp (758 high quality bases) assembled on 2006-04-19
> BS10978.5prime
GAAGTTATCAGTCGACATGATAAGAGAAATGTCCAACCACGATATCAAGC
TGGAGGTCTGCGTGGACTCCATACGATCGGCTTTTGCCGCCGAGGAAGGC
GGAGCTTCACGCATTGAACTGTGTTCGGCATTGGGCGAAGGTGGCTTGAC
ACCCAGCATCGGTACCCTAAAAACTATTAAGGAAACGCTCACAATGCCCA
TTTACTGCATGCTGAGGCCACGGCGGGGCACCGACTTTGTCTACAGCGAC
GAGGAGATGTGCGCCCTGCTCACGGACATGGACTTGCTGCGGGAAAACGG
TGCCGATGGCTTCGTTTTCGGATCCCTGAATCCGGATCGCAGCATCAACG
TGGATCAGTGTCGGCACGTTTTGCTGGCGTCCGGTGGTCTGCCAGTGACC
TTTCACCGCGCCTTCGACCTCACCGACCAGAAGTCCATGGACGAGAATGT
CGACATGTTGCGGGAACTAGGTTTCCGACGTCTGCTGAGCAGCGGATTCC
GACCCACGGCTGCCGATGGCGTAGATTGCCTGGCACAGCTGATAGCCAAA
CATCAAAGAGACTTTATAGTTATGCCCGGCGCCGGCATAAAGGTGTCCAA
CCTGGAGGAGATCCTCACGGTCAGTCGCTGCCTAGAGTTTCACGCTTCCG
CCCTGGACACGGCTGGCGAGGACTACGTGGCGCCCACCACCACGCGAATG
GAGTGTGACGTGACCATGGGCAAACAGGACGTGGACCCCTACTACGGAAC
CAACTCCATCGGGGTGCGAAAGATGGTTACCATTGCGAAAGCGATGAGCT
CCCGCTGAAAGCTTTCTAGAACATTC
BS10978.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6136-PA | 792 | CG6136-RA | 1..792 | 17..808 | 3935 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6136-RD | 2071 | CG6136-RD | 400..1193 | 17..810 | 3955 | 99.9 | Plus |
CG6136-RC | 2177 | CG6136-RC | 400..1193 | 17..810 | 3955 | 99.9 | Plus |
CG6136-RB | 1398 | CG6136-RB | 400..1193 | 17..810 | 3955 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15371020..15371813 | 810..17 | 3955 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:29:43 has no hits.
BS10978.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:29 Download gff for
BS10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:21:55 Download gff for
BS10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:29:55 Download gff for
BS10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RB | 392..1193 | 5..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:48 Download gff for
BS10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RB | 392..1193 | 5..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:48 Download gff for
BS10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15371020..15371820 | 5..810 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:29:55 Download gff for
BS10978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11196742..11197542 | 5..810 | 99 | | Minus |
BS10978.complete Sequence
824 bp assembled on 2006-11-01
GenBank Submission: FJ636750
> BS10978.complete
GAAGTTATCAGTCGACATGATAAGAGAAATGTCCAACCACGATATCAAGC
TGGAGGTCTGCGTGGACTCCATACGATCGGCTTTTGCCGCCGAGGAAGGC
GGAGCTTCACGCATTGAACTGTGTTCGGCATTGGGCGAAGGTGGCTTGAC
ACCCAGCATCGGTACCCTAAAAACTATTAAGGAAACGCTCACAATGCCCA
TTTACTGCATGCTGAGGCCACGGCGGGGCACCGACTTTGTCTACAGCGAC
GAGGAGATGTGCGCCCTGCTCACGGACATGGACTTGCTGCGGGAAAACGG
TGCCGATGGCTTCGTTTTCGGATCCCTGAATCCGGATCGCAGCATCAACG
TGGATCAGTGTCGGCACGTTTTGCTGGCGTCCGGTGGTCTGCCAGTGACC
TTTCACCGCGCCTTCGACCTCACCGACCAGAAGTCCATGGACGAGAATGT
CGACATGTTGCGGGAACTAGGTTTCCGACGTCTGCTGAGCAGCGGATTCC
GACCCACGGCTGCCGATGGCGTAGATTGCCTGGCACAGCTGATAGCCAAA
CATCAAAGAGACTTTATAGTTATGCCCGGCGCCGGCATAAAGGTGTCCAA
CCTGGAGGAGATCCTCACGGTCAGTCGCTGCCTAGAGTTTCACGCTTCCG
CCCTGGACACGGCTGGCGAGGACTACGTGGCGCCCACCACCACGCGAATG
GAGTGTGACGTGACCATGGGCAAACAGGACGTGGACCCCTACTACGGAAC
CAACTCCATCGTGGTGCGAAAGATGGTTACCATTGCGAAAGCGATGAGCT
CCCGCTGAAAGCTTTCTAGACCAT
BS10978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6136-RD | 792 | CG6136-PD | 1..792 | 17..808 | 3960 | 100 | Plus |
CG6136-RC | 792 | CG6136-PC | 1..792 | 17..808 | 3960 | 100 | Plus |
CG6136-RB | 792 | CG6136-PB | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6136-RD | 2071 | CG6136-RD | 400..1193 | 17..810 | 3970 | 100 | Plus |
CG6136-RC | 2177 | CG6136-RC | 400..1193 | 17..810 | 3970 | 100 | Plus |
CG6136-RB | 1398 | CG6136-RB | 400..1193 | 17..810 | 3970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15371020..15371813 | 810..17 | 3970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:07:10 has no hits.
BS10978.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:35 Download gff for
BS10978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:00 Download gff for
BS10978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RA | 356..1157 | 5..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:28 Download gff for
BS10978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RB | 400..1190 | 17..807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:36 Download gff for
BS10978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RA | 356..1157 | 5..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:56 Download gff for
BS10978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RB | 400..1190 | 17..807 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:56 Download gff for
BS10978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15371023..15371813 | 17..807 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:28 Download gff for
BS10978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11196745..11197535 | 17..807 | 100 | | Minus |
BS10978.pep Sequence
Translation from 16 to 807
> BS10978.pep
MIREMSNHDIKLEVCVDSIRSAFAAEEGGASRIELCSALGEGGLTPSIGT
LKTIKETLTMPIYCMLRPRRGTDFVYSDEEMCALLTDMDLLRENGADGFV
FGSLNPDRSINVDQCRHVLLASGGLPVTFHRAFDLTDQKSMDENVDMLRE
LGFRRLLSSGFRPTAADGVDCLAQLIAKHQRDFIVMPGAGIKVSNLEEIL
TVSRCLEFHASALDTAGEDYVAPTTTRMECDVTMGKQDVDPYYGTNSIVV
RKMVTIAKAMSSR*
BS10978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6136-PD | 263 | CG6136-PD | 1..263 | 1..263 | 1351 | 100 | Plus |
CG6136-PC | 263 | CG6136-PC | 1..263 | 1..263 | 1351 | 100 | Plus |
CG6136-PB | 263 | CG6136-PB | 1..263 | 1..263 | 1351 | 100 | Plus |