Clone Sequence Records
BS10987.3prime Sequence
935 bp (820 high quality bases) assembled on 2006-04-19
> BS10987.3prime
ATGGTCTAGAAAGCTTTTATACAAATGAGCCCAGTAGTCGCTTCAAAATT
GACCACAATATTAGGGCAGCACCGCCACAAAGAGTGAACTGCAGCAGCCG
ATGAAGAAATTCAAACCTTTTATAGATCTTTCGTCCCCTTTCCACTACCT
CCTGTCCTGGTTCCTCCTTGGCGAGATAGATGCGAACTCCGGCCAGTGCC
TGTAGGAAGTAATCATCCCAGTCGACGCTGCTCATATTAAAATCGTAAAG
CTTTTGATCCTCGACAGACATTTTGGCCCACAACTTGCGGGTGTTGACGG
TATCGAACGACCAGGATGTGATCACAAAGGGTGCCAGAATATCAATGTTC
TTGTGGATCTTGTCGTACAACTTGATCATACGTGGCTTTTTGCCCCATAA
ACGCAAGGCCAGATCAATGGCATAGCCGGGGAGCAGGTGATAAAAGATGG
CCGTGAACCGGAATAGCCAGGGAATGGTGGTGCAATGCAGAAACGGCAAC
CACATCATCTTGGTCAGTGGATACGTGTACCGCAGCCTCGCCGCCTTGTC
CCGAAATCCACCCCAGGTTATCAGGTTATCATTATTTGGCGTAAAATTGT
AGATAGGTGGCTCCGGCGATAGCTTGATACTTGTATCCCGGGCCGTGTTC
CAAGCGCAGGTCAGCACCATATTGACGCAGTAATCCACGGGTACAATTCC
AGCCTGGGCCTTAAGATTAAGCAGTGTGATATGCAGTATTCCGAAGGCTG
CTCCGTAGAGAACTGCAATGGGTCCGTACAGGTTGTCGATCCAGCCGGGC
ATGGGCTCCTTATAGCTGGCAATTATGACACCCGGACGAAAAATGCTAAG
CGGCAAATCTTTCGCCTCCTTCTGGATCACCTGCTCCGTCAGAGCCCTGG
TATACGTATACGTATTGGGATACTTGCCCTCAGCG
BS10987.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-PA | 1356 | CG10096-RA | 444..1356 | 929..17 | 4540 | 99.8 | Minus |
| CG10096-PB | 1509 | CG10096-RB | 597..1509 | 929..17 | 4540 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10097-RC | 4716 | CG10097-RC | 3574..4493 | 935..17 | 4560 | 99.8 | Minus |
| CG10097-RD | 5233 | CG10097-RD | 3574..4493 | 935..17 | 4560 | 99.8 | Minus |
| CG10096-RD | 2358 | CG10096-RD | 699..1618 | 935..17 | 4560 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12391082..12391792 | 115..825 | 3555 | 100 | Plus |
| 3R | 32079331 | 3R | 12390906..12391007 | 17..118 | 510 | 100 | Plus |
| 3R | 32079331 | 3R | 12391848..12391951 | 826..929 | 505 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-12 14:04:06 has no hits.
BS10987.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:41 Download gff for
BS10987.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-PB | 590..1509 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:22:05 Download gff for
BS10987.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-PB | 590..1509 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:39:51 Download gff for
BS10987.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RA | 3794..4713 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:04 Download gff for
BS10987.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RD | 699..1618 | 17..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:04 Download gff for
BS10987.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12390906..12391005 | 17..116 | 100 | <- | Plus |
| 3R | 12391084..12391792 | 117..825 | 100 | <- | Plus |
| 3R | 12391848..12391958 | 826..935 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:39:51 Download gff for
BS10987.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8216628..8216727 | 17..116 | 100 | <- | Plus |
| arm_3R | 8216806..8217514 | 117..825 | 100 | <- | Plus |
| arm_3R | 8217570..8217680 | 826..935 | 98 | | Plus |
BS10987.5prime Sequence
830 bp (743 high quality bases) assembled on 2006-04-19
> BS10987.5prime
GAAGTTATCAGTCGACATGCGGGAGCGATGCGCCGCATGGGATAAGGATC
CGGTATTCGGTAATCTAATGAAAACAAATCCCGAGGCTCTGAAGCGCGTG
GTACCTTGTGGTGGCGATTGCCAGGAGCCGGATCTTGGCCTGAGCAACAG
CGATCGTCAGGTTTTGATAGATGAGGTGCAGATTGTTATCCACACGGCGG
CCACTGTGCGTTTTGTGGAGCCGCTGCACATCGCCCTGGCTGTTAACACC
CGAGCCACCCGACTCATGATTCAACTGGCCAAGGAGATGTCCCACTTGGA
GTCCTTTGTCCATGTGTCCACCGCGTACTCAAACTGCGTGGTGGAGCACG
TAAGTGAACGCTTCTATCCGGAGCACTTGACCTGCCCTGCCGAAAAGATC
CTAGAGCTGCTGGAAAGCATAAGTCCTGAGCTATTGGATAAAATGGCACC
GGCGCTGATGGGCAAGTATCCCAATACGTATACGTATACCAAGGCTCTGA
CGGAGCAGGTGATCCAGAAGGAGGCGAAAGATTTGCCGCTTAGCATTTTT
CGTCCGGGTGTCATAATTGCCAGCTATAAGGAGCCCATGCCCGGCTGGAT
CGACAACCTGTACGGACCCATTGCAGTTCTCTACGGAGCAGCCTTCGGAA
TACTGCATATCACACTGCTTAATCTTAAGGCCCAGGCTGGAATTGTACCC
GTGGATTACTGCGTCAATATGGTGCTGACCTGCGCTTGGAACACGGCCCG
GGATACAAGTATCAAGCTATCGCCGGAGCCACCTATCTACAATTTTACGC
CAAATAATGATAACCTGATAACCTGGGGGT
BS10987.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-PA | 1356 | CG10096-RA | 1..812 | 17..828 | 4060 | 100 | Plus |
| CG10096-PB | 1509 | CG10096-RB | 154..965 | 17..828 | 4060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10097-RC | 4716 | CG10097-RC | 3138..3949 | 17..828 | 4060 | 100 | Plus |
| CG10097-RD | 5233 | CG10097-RD | 3138..3949 | 17..828 | 4060 | 100 | Plus |
| CG10096-RD | 2358 | CG10096-RD | 263..1074 | 17..828 | 4060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12391848..12392359 | 563..52 | 2560 | 100 | Minus |
| 3R | 32079331 | 3R | 12391528..12391792 | 828..564 | 1325 | 100 | Minus |
| 3R | 32079331 | 3R | 16618397..16618628 | 173..404 | 305 | 75.4 | Plus |
| 3R | 32079331 | 3R | 16615774..16615940 | 173..339 | 250 | 76.6 | Plus |
| 2L | 23513712 | 2L | 8520272..8520553 | 243..524 | 240 | 72.3 | Plus |
| 3R | 32079331 | 3R | 12392456..12392494 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:24:28 has no hits.
BS10987.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:42 Download gff for
BS10987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-PB | 148..966 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:22:07 Download gff for
BS10987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-PB | 148..966 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:31:43 Download gff for
BS10987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RA | 3352..4170 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:30 Download gff for
BS10987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RD | 257..1075 | 9..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:30 Download gff for
BS10987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12391527..12391792 | 564..830 | 99 | <- | Minus |
| 3R | 12391848..12392358 | 53..563 | 100 | <- | Minus |
| 3R | 12392459..12392500 | 9..52 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:31:43 Download gff for
BS10987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8217249..8217514 | 564..830 | 99 | <- | Minus |
| arm_3R | 8217570..8218080 | 53..563 | 100 | <- | Minus |
| arm_3R | 8218181..8218222 | 9..52 | 93 | | Minus |
BS10987.complete Sequence
1388 bp assembled on 2006-11-01
GenBank Submission: FJ636751
> BS10987.complete
GAAGTTATCAGTCGACATGCGGGAGCGATGCGCCGCATGGGATAAGGATC
CGGTATTCGGTAATCTAATGAAAACAAATCCCGAGGCTCTGAAGCGCGTG
GTACCTTGTGGTGGCGATTGCCAGGAGCCGGATCTTGGCCTGAGCAACAG
CGATCGTCAGGTTTTGATAGATGAGGTGCAGATTGTTATCCACACGGCGG
CCACTGTGCGTTTTGTGGAGCCGCTGCACATCGCCCTGGCTGTTAACACC
CGAGCCACCCGACTCATGATTCAACTGGCCAAGGAGATGTCCCACTTGGA
GTCCTTTGTCCATGTGTCCACCGCGTACTCAAACTGCGTGGTGGAGCACG
TAAGTGAACGCTTCTATCCGGAGCACTTGACCTGCCCTGCCGAAAAGATC
CTAGAGCTGCTGGAAAGCATAAGTCCTGAGCTATTGGATAAAATGGCACC
GGCGCTGATGGGCAAGTATCCCAATACGTATACGTATACCAAGGCTCTGA
CGGAGCAGGTGATCCAGAAGGAGGCGAAAGATTTGCCGCTTAGCATTTTT
CGTCCGGGTGTCATAATTGCCAGCTATAAGGAGCCCATGCCCGGCTGGAT
CGACAACCTGTACGGACCCATTGCAGTTCTCTACGGAGCAGCCTTCGGAA
TACTGCATATCACACTGCTTAATCTTAAGGCCCAGGCTGGAATTGTACCC
GTGGATTACTGCGTCAATATGGTGCTGACCTGCGCTTGGAACACGGCCCG
GGATACAAGTATCAAGCTATCGCCGGAGCCACCTATCTACAATTTTACGC
CAAATAATGATAACCTGATAACCTGGGGTGGATTTCGGGACAAGGCGGCG
AGGCTGCGGTACACGTATCCACTGACCAAGATGATGTGGTTGCCGTTTCT
GCATTGCACCACCATTCCCTGGCTATTCCGGTTCACGGCCATCTTTTATC
ACCTGCTCCCCGGCTATGCCATTGATCTGGCCTTGCGTTTATGGGGCAAA
AAGCCACGTATGATCAAGTTGTACGACAAGATCCACAAGAACATTGATAT
TCTGGCACCCTTTGTGATCACATCCTGGTCGTTCGATACCGTCAACACCC
GCAAGTTGTGGGCCAAAATGTCTGTCGAGGATCAAAAGCTTTACGATTTT
AATATGAGCAGCGTCGACTGGGATGATTACTTCCTACAGGCACTGGCCGG
AGTTCGCATCTATCTCGCCAAGGAGGAACCAGGACAGGAGGTAGTGGAAA
GGGGACGAAAGATCTATAAAAGGTTTGAATTTCTTCATCGGCTGCTGCAG
TTCACTCTTTGTGGCGGTGCTGCCCTAATATTGTGGTCAATTTTGAAGCG
ACTACTGGGCTCATTTGTATAAAAGCTTTCTAGACCAT
BS10987.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-RD | 1509 | CG10096-PD | 154..1509 | 17..1372 | 6780 | 100 | Plus |
| CG10096-RC | 1356 | CG10096-PC | 1..1356 | 17..1372 | 6780 | 100 | Plus |
| CG10096-RB | 1509 | CG10096-PB | 154..1509 | 17..1372 | 6780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10097-RC | 4716 | CG10097-RC | 3138..4493 | 17..1372 | 6780 | 100 | Plus |
| CG10097-RD | 5233 | CG10097-RD | 3138..4493 | 17..1372 | 6780 | 100 | Plus |
| CG10096-RD | 2358 | CG10096-RD | 263..1618 | 17..1372 | 6780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12391082..12391792 | 1274..564 | 3555 | 100 | Minus |
| 3R | 32079331 | 3R | 12391848..12392359 | 563..52 | 2560 | 100 | Minus |
| 3R | 32079331 | 3R | 12390906..12391007 | 1372..1271 | 510 | 100 | Minus |
| 3R | 32079331 | 3R | 16618397..16618628 | 173..404 | 305 | 75.4 | Plus |
| 3R | 32079331 | 3R | 16615774..16615940 | 173..339 | 250 | 76.6 | Plus |
| 2L | 23513712 | 2L | 8520272..8520553 | 243..524 | 240 | 72.3 | Plus |
| 3R | 32079331 | 3R | 12392456..12392494 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:26:20 has no hits.
BS10987.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:37 Download gff for
BS10987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 148..1509 | 9..1372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:02 Download gff for
BS10987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10097-RA | 3256..4617 | 9..1372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:09:29 Download gff for
BS10987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RA | 3358..4711 | 17..1370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:37 Download gff for
BS10987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 257..1618 | 9..1372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:51 Download gff for
BS10987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RD | 263..1616 | 17..1370 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:51 Download gff for
BS10987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12390908..12391005 | 1273..1370 | 100 | <- | Minus |
| 3R | 12391084..12391792 | 564..1272 | 100 | <- | Minus |
| 3R | 12391848..12392358 | 53..563 | 100 | <- | Minus |
| 3R | 12392459..12392494 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:09:29 Download gff for
BS10987.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8216630..8216727 | 1273..1370 | 100 | <- | Minus |
| arm_3R | 8216806..8217514 | 564..1272 | 100 | <- | Minus |
| arm_3R | 8217570..8218080 | 53..563 | 100 | <- | Minus |
| arm_3R | 8218181..8218216 | 17..52 | 100 | | Minus |
BS10987.pep Sequence
Translation from 16 to 1371
> BS10987.pep
MRERCAAWDKDPVFGNLMKTNPEALKRVVPCGGDCQEPDLGLSNSDRQVL
IDEVQIVIHTAATVRFVEPLHIALAVNTRATRLMIQLAKEMSHLESFVHV
STAYSNCVVEHVSERFYPEHLTCPAEKILELLESISPELLDKMAPALMGK
YPNTYTYTKALTEQVIQKEAKDLPLSIFRPGVIIASYKEPMPGWIDNLYG
PIAVLYGAAFGILHITLLNLKAQAGIVPVDYCVNMVLTCAWNTARDTSIK
LSPEPPIYNFTPNNDNLITWGGFRDKAARLRYTYPLTKMMWLPFLHCTTI
PWLFRFTAIFYHLLPGYAIDLALRLWGKKPRMIKLYDKIHKNIDILAPFV
ITSWSFDTVNTRKLWAKMSVEDQKLYDFNMSSVDWDDYFLQALAGVRIYL
AKEEPGQEVVERGRKIYKRFEFLHRLLQFTLCGGAALILWSILKRLLGSF
V*
BS10987.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-PD | 502 | CG10096-PD | 52..502 | 1..451 | 2392 | 100 | Plus |
| CG10096-PC | 451 | CG10096-PC | 1..451 | 1..451 | 2392 | 100 | Plus |
| CG10096-PB | 502 | CG10096-PB | 52..502 | 1..451 | 2392 | 100 | Plus |
| CG10096-PA | 451 | CG10096-PA | 1..451 | 1..451 | 2392 | 100 | Plus |
| CG17562-PA | 499 | CG17562-PA | 52..499 | 1..447 | 1304 | 54.9 | Plus |
