Clone BS10992 Report

Search the DGRC for BS10992

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:109
Well:92
Vector:pDNR-Dual
Associated Gene/Transcriptjeb-RA
Protein status:BS10992.pep: full length peptide match
Sequenced Size:1715

Clone Sequence Records

BS10992.3prime Sequence

704 bp (675 high quality bases) assembled on 2006-04-19

> BS10992.3prime
ATGGTCTAGAAAGCTTTTAACGCCCTCGCGCCCAGCGTAGTAACGCATCC
GCTAACACATCCAGATGGGCCTTCGTCGTCTTGTAGAACATGCAGGATCT
TCGGTCCTCGTCCTCGCCATCGGGACAGTCGATGAAGCCATCGCACAGCA
CATGATCGTCTATGCAGCGGTATCTGCCCTGCCGGTCGGGAATCGGACAG
GCGAATCGCTCCATGCCATCCATGGCGGTAGGACACTCGATTTGTGGCAC
ATCGTATTGCCGTTGACCGCGGGCGGTGCGCAGCATCAGCTGGCTGGCTA
TGCTGTGTGAAATCGGTGGCTGCGCTGAGTAACCGCCTCCTGGCGATCCC
ATGGATCCCGCCGATCCGGAACCGGATCGCTTATGGCTGGGATCCTTTTT
GTCCTGCTGCGACTGTTGCTCCACCTGCTGCTGTTTAGGTAGTCCATCGC
CGGCGGCTTGTTTGCCGGAGGAAGAAGTGGCGGAGGAGACGGCCGAGGAT
GCACTGCTACCTAGCTCGCTATGTGGCTTCTCGTTATCCTTGGAGCCGGA
GCGAGTGGATGGTTTCAGGTGCTTGCTGGCCGTGGCCTCGGAGTTGGCGG
ACAGCGATAGTTTGCCATTGCGCTGTGGCTTGAAGTGCTGGGCGAAGATC
TGGCGCTGCAGCTGCTTTTCCGCCTCAGGATTATGGGGAATGCCCTGGCC
ATTT

BS10992.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG30040-PA 1683 jeb-RA 996..1683 704..17 3390 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
jeb-RB 10378 CG30040-RB 2276..2963 704..17 3410 99.7 Minus
jeb-RA 4455 CG30040-RA 1789..2476 704..17 3410 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12116599..12117065 238..704 2305 99.6 Plus
2R 25286936 2R 12092747..12092908 77..238 810 100 Plus
2R 25286936 2R 12092609..12092669 17..77 305 100 Plus
Blast to na_te.dros performed 2015-02-10 21:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
Osvaldo 1543 Osvaldo OSV 1543bp 1444..1515 408..335 113 65.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6832 435..378 112 67.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6807..6861 435..382 110 69.1 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 680..715 400..435 108 77.8 Plus

BS10992.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:43 Download gff for BS10992.3prime
Subject Subject Range Query Range Percent Splice Strand
jeb-PA 996..1683 17..704 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:22:08 Download gff for BS10992.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30040-PA 996..1683 17..704 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:44:02 Download gff for BS10992.3prime
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 1789..2479 12..704 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:34 Download gff for BS10992.3prime
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 1789..2479 12..704 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:34 Download gff for BS10992.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12092606..12092668 12..76 96 <- Plus
2R 12092747..12092907 77..237 100 <- Plus
2R 12116599..12117065 238..704 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:44:02 Download gff for BS10992.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7980111..7980173 12..76 96 <- Plus
arm_2R 7980252..7980412 77..237 100 <- Plus
arm_2R 8004104..8004570 238..704 99   Plus

BS10992.5prime Sequence

811 bp (804 high quality bases) assembled on 2006-04-19

> BS10992.5prime
GAAGTTATCAGTCGACATGTTCTGCTCGCTGGCCCAGACGCTCTTCTGCG
TCCTGCTCATACAGGGCGGCCTCTATGCCCTCCATCTGAGCGGAAACGGA
AATGGCAACGGGAACGGGAATGGGAACGGCGAGAAGTCGCTGGGCGAAGC
CAAGGCAGTGCAGGTGCCCAGTCATCCCGTTGGACCCTCGACGGGAGTAG
CCGCCGCCTGGCAGACCGCACCCTCGCAGCAGCAGCAGCACCAACAGCAT
CCCGGAGGATCTCCGCCCGGCGGTGGATCCTCGCCGCATGGCCATCGGTC
CGCCGCAGCGGCCGCCTTCGATGCCACCACCGTGCGGCTGAACAAGGAGA
TAGCGGATATGGCCCAGCTGGAGCGAGAGCGACTAATGCTCCTGGCCCGC
GCCAAGCAGACGGCGGAACAGCCGCCGGCGGGCAGTAATCATCGCGGTCA
TCCCTTCATTGCCGGCCGGATACAGATGCAGCCCAGCGAGGAGCTGGAAG
TGGGCGACTATCCGGCGCTGTTGCAGCAGGCCGCACGGGGCTACATCTTC
GGTAATGTGCAGAAGCAACCACCGACGCCGGTTACCCTGGAACAGGATTA
TGAGCAGCTGAGGGATCTGGAGAATAGACCCGTTAAATACTACGGAAGAG
TGGTGCAGCCAGCGGAGAGGGAGGAGCAGGTGGAGGCTCTCTACGAACCG
CTGCACTCGTTCGGCGACTTTGATGACTTCTCGGAACTGGAGCAGGAACC
GCAGGAGCCGCACTTGGGCGAGGATGAGTTGCTGCGTGAACTGGATGCCT
ATCAATATCAC

BS10992.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG30040-PA 1683 jeb-RA 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
jeb-RB 10378 CG30040-RB 1281..2075 17..811 3975 100 Plus
jeb-RA 4455 CG30040-RA 794..1588 17..811 3975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12117266..12118060 811..17 3975 100 Minus
Blast to na_te.dros performed 2015-02-12 06:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2373 226..251 112 92.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2351..2376 226..251 112 92.3 Plus

BS10992.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:44 Download gff for BS10992.5prime
Subject Subject Range Query Range Percent Splice Strand
jeb-PA 1..795 17..811 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:22:09 Download gff for BS10992.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30040-PA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:43:07 Download gff for BS10992.5prime
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 794..1588 17..811 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:15:12 Download gff for BS10992.5prime
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 794..1588 17..811 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:15:12 Download gff for BS10992.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12117266..12118058 19..811 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:43:07 Download gff for BS10992.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8004771..8005563 19..811 100 <- Minus

BS10992.complete Sequence

1715 bp assembled on 2009-08-26

GenBank Submission: KX800975

> BS10992.complete
GAAGTTATCAGTCGACATGTTCTGCTCGCTGGCCCAGACGCTCTTCTGCG
TCCTGCTCATACAGGGCGGCCTCTATGCCCTCCATCTGAGCGGAAACGGA
AATGGCAACGGGAACGGGAATGGGAACGGCGAGAAGTCGCTGGGCGAAGC
CAAGGCAGTGCAGGTGCCCAGTCATCCCGTTGGACCCTCGACGGGAGTAG
CCGCCGCCTGGCAGACCGCACCCTCGCAGCAGCAGCAGCACCAACAGCAT
CCCGGAGGATCTCCGCCCGGCGGTGGATCCTCGCCGCATGGCCATCGGTC
CGCCGCAGCGGCCGCCTTCGATGCCACCACCGTGCGGCTGAACAAGGAGA
TAGCGGATATGGCCCAGCTGGAGCGAGAGCGACTAATGCTCCTGGCCCGC
GCCAAGCAGACGGCGGAACAGCCGCCGGCGGGCAGTAATCATCGCGGTCA
TCCCTTCATTGCCGGCCGGATACAGATGCAGCCCAGCGAGGAGCTGGAAG
TGGGCGACTATCCGGCGCTGTTGCAGCAGGCCGCACGGGGCTACATCTTC
GGTAATGTGCAGAAGCAACCACCGACGCCGGTTACCCTGGAACAGGATTA
TGAGCAGCTGAGGGATCTGGAGAATAGACCCGTTAAATACTACGGAAGAG
TGGTGCAGCCAGCGGAGAGGGAGGAGCAGGTGGAGGCTCTCTACGAACCG
CTGCACTCGTTCGGCGACTTTGATGACTTCTCGGAACTGGAGCAGGAACC
GCAGGAGCCGCACTTGGGCGAGGATGAGTTGCTGCGTGAACTGGATGCCT
ATCAATATCACGGCCTGGAGGACGAAACCCTTCCGGAGAATCCCTATCGC
ACGCTGGAGCAATTGGAGCTGGGTGCACCCGACTCCCTGCAGCAGCTCTT
CGAGCAGGAACAGGAGCAGCGAGATGCCCCCTTCAAGGCGATGCACACCG
GCAAAATCCACAACCCGGGCAACTACAACATAAGGGTGCAGCAAAAGTGG
GCGAGGAAACGAAATGGCCAGGGCATTGCCCATAATCCTGAGGCGGAAAA
GCAGCTGCAGCGCCAGATCTTCGCCCAGCACTTCAAGCCACAGCGCAATG
GCAAACTATCGCTGTCCGCCAACTCCGAGGCCACGGCCAGCAAGCACCTG
AAACCATCCACTCGCTCCGGCTCCAAGGATAACGAGAAGCCACATAGCGA
GCTAGGTAGCAGTGCATCCTCGGCCGTCTCCTCCGCCACTTCTTCCTCCG
GCAAACAAGCCGCCGGCGATGGACTACCTAAACAGCAGCAGGTGGAGCAA
CAGTCGCAGCAGGACAAAAAGGATCCCAGCCATAAGCGATCCGGTTCCGG
ATCGGCGGGATCCATGGGATCGCCAGGAGGCGGTTACTCAGCGCAGCCAC
CGATTTCACACAGCATAGCCAGCCAGCTGATGCTGCGCACCGCCCGCGGT
CAACGGCAATACGATGTGCCACAAATCGAGTGTCCTACCGCCATGGATGG
CATGGAGCGATTCGCCTGTCCGATTCCCGACCGGCAGGGCAGATACCGCT
GCATAGACGATCATGTGCTGTGCGATGGCTTCATCGACTGTCCCGATGGC
GAGGACGAGGACCGAAGATCCTGCATGTTCTACAAGACGACGAAGGCCCA
TCTGGATGTGTTAGCGGATGCGTTACTACGCTGGGCGCGAGGGCGTTAAA
AGCTTTCTAGACCAT

BS10992.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
jeb-RB 1683 CG30040-PB 1..1683 17..1699 8400 99.9 Plus
jeb-RA 1683 CG30040-PA 1..1683 17..1699 8400 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
jeb-RB 10378 CG30040-RB 1281..2963 17..1699 8400 99.9 Plus
jeb-RA 4455 CG30040-RA 794..2476 17..1699 8400 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12116599..12118060 1478..17 7295 99.9 Minus
2R 25286936 2R 12092747..12092908 1639..1478 810 100 Minus
2R 25286936 2R 12092609..12092669 1699..1639 305 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:34:07 has no hits.

BS10992.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:13 Download gff for BS10992.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 818..2493 22..1697 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:19 Download gff for BS10992.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 799..2474 22..1697 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:38 Download gff for BS10992.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 799..2474 22..1697 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:38 Download gff for BS10992.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12092611..12092668 1640..1697 100 <- Minus
2R 12092747..12092907 1479..1639 100 <- Minus
2R 12116599..12118055 22..1478 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:19 Download gff for BS10992.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7980116..7980173 1640..1697 100 <- Minus
arm_2R 7980252..7980412 1479..1639 100 <- Minus
arm_2R 8004104..8005560 22..1478 99   Minus

BS10992.pep Sequence

Translation from 16 to 1698

> BS10992.pep
MFCSLAQTLFCVLLIQGGLYALHLSGNGNGNGNGNGNGEKSLGEAKAVQV
PSHPVGPSTGVAAAWQTAPSQQQQHQQHPGGSPPGGGSSPHGHRSAAAAA
FDATTVRLNKEIADMAQLERERLMLLARAKQTAEQPPAGSNHRGHPFIAG
RIQMQPSEELEVGDYPALLQQAARGYIFGNVQKQPPTPVTLEQDYEQLRD
LENRPVKYYGRVVQPAEREEQVEALYEPLHSFGDFDDFSELEQEPQEPHL
GEDELLRELDAYQYHGLEDETLPENPYRTLEQLELGAPDSLQQLFEQEQE
QRDAPFKAMHTGKIHNPGNYNIRVQQKWARKRNGQGIAHNPEAEKQLQRQ
IFAQHFKPQRNGKLSLSANSEATASKHLKPSTRSGSKDNEKPHSELGSSA
SSAVSSATSSSGKQAAGDGLPKQQQVEQQSQQDKKDPSHKRSGSGSAGSM
GSPGGGYSAQPPISHSIASQLMLRTARGQRQYDVPQIECPTAMDGMERFA
CPIPDRQGRYRCIDDHVLCDGFIDCPDGEDEDRRSCMFYKTTKAHLDVLA
DALLRWARGR*

BS10992.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
jeb-PB 560 CG30040-PB 1..560 1..560 2962 100 Plus
jeb-PA 560 CG30040-PA 1..560 1..560 2962 100 Plus