Clone BS10995 Report

Search the DGRC for BS10995

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:109
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptEct4-RE
Protein status:BS10995.pep: full length peptide match
Sequenced Size:3191

Clone Sequence Records

BS10995.3prime Sequence

809 bp (783 high quality bases) assembled on 2006-04-19

> BS10995.3prime
ATGGTCTAGAAAGCTTCTACGCTGGAGCCGCTGGGGGACTCTGGTTAGAG
CTTGAGCTTGAATTTGAGTTGGGAGTAGAAGAAGTAGTAGATGTAGTACT
CGTTGGCCCACCTTGTCCGCTGCCATTGGCCGCCACCATCAGGCCATCCA
CCACACTGCCCGTAACGCCGCCACCACCTCCTCCTCCAGTTCCTGCTCCT
GATCCGGCGCCTGCTCCTCCGCTCTGGTAGTCGGAGTCGTTGCTGTGCAT
TCTTTGGTATGAGACCGAACCGGGGGTGCCGGGCACCATCGCCGCAATGC
GATCGATATTCTTTTCGCCGCGCAAAAATCTTTCGAGCTTATCGATGCAT
GCGTCCTGGTAGTCGTGGATCCAATTAACACCGTTAAAATGGGCCACACT
GCGCATGTCCTCGGGAAGTCGCTCCACCTCGGGCCAATCGAATTGCTGGT
CTATGATGGGTATAATGTTGCAGTTCGAGTTCAGGGCAGCCACGATTTCG
CGATGCACCCAGTCCTTGCAGTCCTCGTCGTTAATGCAGCGGTGCAGGGC
ATCGGGAGTTAATACTAAGACAAAGTTCTTTGCCTGTCGAATACTGTTCA
ATAGGCCGTTGTCAAATTTGCCCGCCTCCAGGCGCTCCACGTCGATGAAA
ACGGAGAAACCACGAAGCTGCAGATGCACCTTGAGAAGACTGGCTAGTTG
GGAGCCGTTTGATCGCCTATAGCTAACGAAAACATCTAGCGTCTTGGCCA
TGTTCTCCTCCGACGAGCTGGGCAGCGAATTCTCCAAGTTTTTGACCGCA
TTGAGAATT

BS10995.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7915-PB 3159 Ect4-RB 2367..3159 809..17 3965 100 Minus
CG7915-PC 4083 Ect4-RC 2445..3142 809..112 3490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
Ect4-RE 4907 CG43119-RE 2720..3513 809..16 3970 100 Minus
Ect4-RJ 3837 CG43119-RJ 2919..3616 809..112 3490 100 Minus
Ect4-RI 6741 CG43119-RI 4912..5609 809..112 3490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8105438..8105753 331..16 1580 100 Minus
3L 28110227 3L 8104878..8105060 681..499 915 100 Minus
3L 28110227 3L 8105127..8105296 499..330 850 100 Minus
3L 28110227 3L 8104689..8104822 809..676 670 100 Minus
Blast to na_te.dros performed on 2015-02-03 16:57:45 has no hits.

BS10995.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:49 Download gff for BS10995.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7915-PA 2445..3237 17..809 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:22:17 Download gff for BS10995.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7915-PB 2367..3159 17..809 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:31:16 Download gff for BS10995.3prime
Subject Subject Range Query Range Percent Splice Strand
Ect4-RE 2720..3513 16..809 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:58:24 Download gff for BS10995.3prime
Subject Subject Range Query Range Percent Splice Strand
Ect4-RE 2720..3513 16..809 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:58:24 Download gff for BS10995.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8104689..8104818 680..809 100 -> Minus
3L 8104880..8105059 500..679 100 -> Minus
3L 8105127..8105296 330..499 100 -> Minus
3L 8105440..8105753 16..329 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:31:16 Download gff for BS10995.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8097789..8097918 680..809 100 -> Minus
arm_3L 8097980..8098159 500..679 100 -> Minus
arm_3L 8098227..8098396 330..499 100 -> Minus
arm_3L 8098540..8098853 16..329 100   Minus

BS10995.5prime Sequence

878 bp (770 high quality bases) assembled on 2006-04-19

> BS10995.5prime
GAAGTTATCAGTCGACATGTCCAATCAGGCACCCTGGCCCGTTCGCAAGG
GCATCTTCCGCTCGAGCGGTCAGTCGGATTTCACGCCAACCCGATCGCCT
AGTCCCATTGTGGAGATGCCATTATCCCCGCCGCCGGTGGCCACGCCCTC
GAATAGATTTGGAATCAATTCACCGCTCTCCCCACCGCCGCAGCCTATTC
AAGTGGTGGCGGGTTCAACGACAGCCACTACCATGTCCACTGCGTCCGCT
GCCAGAGTGTCTGGTGCAGCTGCCTCCACTTCATCCTCGTCCTCCTCTTC
TTCGTCGTCGCAGTGCTCGTCGCAAACCTCGTCGAGTTCTAGTTCGCACA
CCAGAGTACGTAAAAGTTCTAACCCGCCCCCACAGCCAATTACCAGTTGT
CCACTGTCGCCACCACCACCACCACCACCACAGCAACAACAACAACTACC
ACAACAACTGCCACCTCCAACGCCCATCAACAACACCAACCACTCAGCAA
TTACAACACCCAATCACAACAATAACCACAACTGCAATCAAATGAGAAAT
GTACGCGAAATTCCCATTGAGGTGGAGCAGAGCAAGGAAGCCCTCTCACT
CCGCACCGGCGACATCACACAGCAGGCGAGCAACAATGTGGCGGCCTCCA
GTATTACGGTGCAAAGTGAGAATTTCTCCGCGGACAAGAAGGCGATATCC
CAGTCGCAGCAATCGCAGACGATGACCTCCAACGGGATCATCAGTCAGGA
GAAACATGTATCCTCCGCCTCGCAGGCCAACTACTCGATGTCGCACAAGG
GCGTTTCCAGTACCGGCAGTAGCATGATCACCAGCTCCTCGCAAATGTCC
GCGATGAATGGNCAGATGCTGAAGCTCG

BS10995.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7915-PB 3159 Ect4-RB 1..862 17..878 4291 99.8 Plus
CG7915-PC 4083 Ect4-RC 646..940 584..878 1456 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
Ect4-RE 4907 CG43119-RE 354..1215 17..878 4299 99.9 Plus
Ect4-RJ 3837 CG43119-RJ 1120..1414 584..878 1464 99.7 Plus
Ect4-RI 6741 CG43119-RI 3113..3407 584..878 1464 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8101992..8102562 17..587 2855 100 Plus
3L 28110227 3L 8102891..8103184 585..878 1459 99.7 Plus
Blast to na_te.dros performed on 2015-02-12 11:53:00 has no hits.

BS10995.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:50 Download gff for BS10995.5prime
Subject Subject Range Query Range Percent Splice Strand
Ect4-PB 1..862 17..878 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:22:18 Download gff for BS10995.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7915-PB 1..862 17..878 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:17:51 Download gff for BS10995.5prime
Subject Subject Range Query Range Percent Splice Strand
Ect4-RE 354..1215 17..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:00:05 Download gff for BS10995.5prime
Subject Subject Range Query Range Percent Splice Strand
Ect4-RE 354..1215 17..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:00:05 Download gff for BS10995.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8101992..8102561 17..586 100 -> Plus
3L 8102893..8103184 587..878 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:17:51 Download gff for BS10995.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8095092..8095661 17..586 100 -> Plus
arm_3L 8095993..8096284 587..878 99   Plus

BS10995.complete Sequence

3191 bp assembled on 2010-05-10

GenBank Submission: KX800624

> BS10995.complete
GAAGTTATCAGTCGACATGTCCAATCAGGCACCCTGGCCCGTTCGCAAGG
GCATCTTCCGCTCGAGCGGTCAGTCGGATTTCACGCCAACCCGATCGCCT
AGTCCCATTGTGGAGATGCCATTATCCCCGCCGCCGGTGGCCACGCCCTC
GAATAGATTTGGAATCAATTCACCGCTCTCCCCACCGCCGCAGCCTATTC
AAGTGGTGGCGGGTTCAACGACAGCCACTACCATGTCCACTGCGTCCGCT
GCCAGAGTGTCTGGTGCAGCTGCCTCCACTTCATCCTCGTCCTCCTCTTC
TTCGTCGTCGCAGTGCTCGTCGCAAACCTCGTCGAGTTCTAGTTCGCACA
CCAGAGTACGTAAAAGTTCTAACCCGCCCCCACAGCCAATTACCAGTTGT
CCACTGTCGCCACCACCACCACCACCACCACAGCAACAACAACAACTACC
ACAACAACTGCCACCTCCAACGCCCATCAACAACACCAACCACTCAGCAA
TTACAACACCCAATCACAACAATAACCACAACTGCAATCAAATGAGAAAT
GTACGCGAAATTCCCATTGAGGTGGAGCAGAGCAAGGAAGCCCTCTCACT
CCGCACCGGCGACATCACACAGCAGGCGAGCAACAATGTGGCGGCCTCCA
GTATTACGGTGCAAAGTGAGAATTTCTCCGCGGACAAGAAGGCGATATCC
CAGTCGCAGCAATCGCAGACGATGACCTCCAACGGGATCATCAGTCAGGA
GAAACATGTATCCTCCGCCTCGCAGGCCAACTACTCGATGTCGCACAAGG
GCGTTTCCAGTACCGGCAGTAGCATGATCACCAGCTCCTCGCAAATGTCC
GCGATGAATGGCCAGATGCTGAAGCTCGCCGATCTCAAGTTGGATGACCT
CAAGTCGCTGACAGCTGGCAGTGGGCAGCAGGAGATCGAGCAGACCATCA
ACAAGTATTCCAATATGCTGACCTCAATAGTGAGCTCCCTGCAAGAAGAT
GAGCGAGGTGGTAGTGCCATAACCGTCCACGATGTTGGTGGCAAGAAGTC
TCAGTACCTGGAGAAGATCAACGAAGTCATTCGTCGAGCTTGGGCAGTGC
CCACACATGGCCACGAGCTGGGCTACTCATTGTGCAATTCCCTGCGCCAA
AGTGGCGGCCTCGATCTTCTCATGAAGAACTGCGTTAAGCCCGATCTCCA
GTTTTCCTCCGCACAGCTTCTTGAGCAGTGCCTAACCACCGAGAACCGCA
AACATGTGGTGGATAATGGTCTGGATAAGGTGGTCAATGTGGCCTGTGTC
TGCACAAAGAATTCCAATATGGAGCACTCCCGCGTGGGCACTGGCATCCT
GGAGCATCTGTTCAAACACTCCGAGGGCACCTGTTCGGATGTGATAAGGC
TAGGTGGTCTGGATGCCGTGCTCTTTGAGTGCCGCACCAGTGATTTGGAA
ACTCTGCGACACTGCGCTAGTGCACTGGCAAATTTATCTCTATATGGTGG
AGCCGAGAATCAGGAGGAGATGATCCTACGCAAGGTGCCCATGTGGTTGT
TCCCATTGGCCTTCCACAACGATGATAACATCAAGTACTATGCCTGCTTG
GCCATTGCAGTGCTGGTAGCCAACAAGGAGATTGAAGCCGAGGTGCTGAA
GTCTGGATGCTTGGATTTGGTGGAACCCTTTGTCACCTCCCACGACCCCT
CGGCTTTTGCGAGATCCAATCTGGCACATGCCCACGGGCAAAGCAAACAT
TGGCTGAAAAGATTGGTTCCAGTTTTGAGTTCCAATCGCGAAGAGGCCCG
CAATCTGGCTGCCTTCCATTTTTGCATGGAGGCGGGCATCAAGAGGGAGC
AGGGTAACACCGACATCTTCCGCGAGATCAACGCTATTGAAGCTTTGAAA
AATGTGGCCAGCTGTCCAAATGCCATTGCATCCAAGTTCGCCGCTCAGGC
TCTGAGATTGATTGGAGAGACAGTTCCGCACAAGCTGTCCCAACAGGTTC
CCTTGTGGTCCGTGGAGGATGTGCAGGAGTGGGTAAAGCAAATCGGTTTC
AATGACTACATCGACAAGTTCAACGAGTCCCAGGTGGACGGGGATCTTTT
ACTGAAGCTCAATCAGGATAACCTCCGGGCTGATATTGGAATCGGTAATG
GAATACTTCTAAAGCGTTTTGAACGCGAGCTGCAAAATCTCAAGCGTATG
GCTGACTACTCATCCAAGGACACGGCCAAGATGCACCAATTTCTCTCGGA
GATCGGTACTGATTACTGCACCTACACGTATGCCATGCTGAATGCTGGAA
TTGACAAGTGTGCACTGCCGCATGTCAATGAGGATATGCTGATGACAGAG
TGTGGCATCCACAACTCGATCCATCGTCTGAGAATTCTCAATGCGGTCAA
AAACTTGGAGAATTCGCTGCCCAGCTCGTCGGAGGAGAACATGGCCAAGA
CGCTAGATGTTTTCGTTAGCTATAGGCGATCAAACGGCTCCCAACTAGCC
AGTCTTCTCAAGGTGCATCTGCAGCTTCGTGGTTTCTCCGTTTTCATCGA
CGTGGAGCGCCTGGAGGCGGGCAAATTTGACAACGGCCTATTGAACAGTA
TTCGACAGGCAAAGAACTTTGTCTTAGTATTAACTCCCGATGCCCTGCAC
CGCTGCATTAACGACGAGGACTGCAAGGACTGGGTGCATCGCGAAATCGT
GGCTGCCCTGAACTCGAACTGCAACATTATACCCATCATAGACCAGCAAT
TCGATTGGCCCGAGGTGGAGCGACTTCCCGAGGACATGCGCAGTGTGGCC
CATTTTAACGGTGTTAATTGGATCCACGACTACCAGGACGCATGCATCGA
TAAGCTCGAAAGATTTTTGCGCGGCGAAAAGAATATCGATCGCATTGCGG
CGATGGTGCCCGGCACCCCCGGTTCGGTCTCATACCAAAGAATGCACAGC
AACGACTCCGACTACCAGAGCGGAGGAGCAGGCGCCGGATCAGGAGCAGG
AACTGGAGGAGGAGGTGGTGGCGGCGTTACGGGCAGTGTGGTGGATGGCC
TGATGGTGGCGGCCAATGGCAGCGGACAAGGTGGGCCAACGAGTACTACA
TCTACTACTTCTTCTACTCCCAACTCAAATTCAAGCTCAAGCTCTAACCA
GAGTCCCCCAGCGGCTCCAGCGTAGAAGCTTTCTAGACCAT

BS10995.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
Ect4-RE 3159 CG43119-PE 1..3159 17..3175 15795 100 Plus
Ect4-RJ 3180 CG43119-PJ 646..3142 584..3080 12485 100 Plus
Ect4-RI 5193 CG43119-PI 1678..4174 584..3080 12485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
Ect4-RE 4907 CG43119-RE 354..3513 17..3176 15800 100 Plus
Ect4-RJ 3837 CG43119-RJ 1120..3616 584..3080 12485 100 Plus
Ect4-RI 6741 CG43119-RI 3113..5609 584..3080 12485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8102891..8104822 585..2516 9660 100 Plus
3L 28110227 3L 8101992..8102562 17..587 2855 100 Plus
3L 28110227 3L 8105438..8105753 2861..3176 1580 100 Plus
3L 28110227 3L 8104878..8105060 2511..2693 915 100 Plus
3L 28110227 3L 8105127..8105296 2693..2862 850 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:55:50 has no hits.

BS10995.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:34 Download gff for BS10995.complete
Subject Subject Range Query Range Percent Splice Strand
Ect4-RE 335..3493 17..3175 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:10 Download gff for BS10995.complete
Subject Subject Range Query Range Percent Splice Strand
Ect4-RE 354..3512 17..3175 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:41 Download gff for BS10995.complete
Subject Subject Range Query Range Percent Splice Strand
Ect4-RE 354..3512 17..3175 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:41 Download gff for BS10995.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8101992..8102561 17..586 100 -> Plus
3L 8102893..8104818 587..2512 100 -> Plus
3L 8104880..8105059 2513..2692 100 -> Plus
3L 8105127..8105296 2693..2862 100 -> Plus
3L 8105440..8105752 2863..3175 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:10 Download gff for BS10995.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8095092..8095661 17..586 100 -> Plus
arm_3L 8095993..8097918 587..2512 100 -> Plus
arm_3L 8097980..8098159 2513..2692 100 -> Plus
arm_3L 8098227..8098396 2693..2862 100 -> Plus
arm_3L 8098540..8098852 2863..3175 100   Plus

BS10995.pep Sequence

Translation from 16 to 3174

> BS10995.pep
MSNQAPWPVRKGIFRSSGQSDFTPTRSPSPIVEMPLSPPPVATPSNRFGI
NSPLSPPPQPIQVVAGSTTATTMSTASAARVSGAAASTSSSSSSSSSSQC
SSQTSSSSSSHTRVRKSSNPPPQPITSCPLSPPPPPPPQQQQQLPQQLPP
PTPINNTNHSAITTPNHNNNHNCNQMRNVREIPIEVEQSKEALSLRTGDI
TQQASNNVAASSITVQSENFSADKKAISQSQQSQTMTSNGIISQEKHVSS
ASQANYSMSHKGVSSTGSSMITSSSQMSAMNGQMLKLADLKLDDLKSLTA
GSGQQEIEQTINKYSNMLTSIVSSLQEDERGGSAITVHDVGGKKSQYLEK
INEVIRRAWAVPTHGHELGYSLCNSLRQSGGLDLLMKNCVKPDLQFSSAQ
LLEQCLTTENRKHVVDNGLDKVVNVACVCTKNSNMEHSRVGTGILEHLFK
HSEGTCSDVIRLGGLDAVLFECRTSDLETLRHCASALANLSLYGGAENQE
EMILRKVPMWLFPLAFHNDDNIKYYACLAIAVLVANKEIEAEVLKSGCLD
LVEPFVTSHDPSAFARSNLAHAHGQSKHWLKRLVPVLSSNREEARNLAAF
HFCMEAGIKREQGNTDIFREINAIEALKNVASCPNAIASKFAAQALRLIG
ETVPHKLSQQVPLWSVEDVQEWVKQIGFNDYIDKFNESQVDGDLLLKLNQ
DNLRADIGIGNGILLKRFERELQNLKRMADYSSKDTAKMHQFLSEIGTDY
CTYTYAMLNAGIDKCALPHVNEDMLMTECGIHNSIHRLRILNAVKNLENS
LPSSSEENMAKTLDVFVSYRRSNGSQLASLLKVHLQLRGFSVFIDVERLE
AGKFDNGLLNSIRQAKNFVLVLTPDALHRCINDEDCKDWVHREIVAALNS
NCNIIPIIDQQFDWPEVERLPEDMRSVAHFNGVNWIHDYQDACIDKLERF
LRGEKNIDRIAAMVPGTPGSVSYQRMHSNDSDYQSGGAGAGSGAGTGGGG
GGGVTGSVVDGLMVAANGSGQGGPTSTTSTTSSTPNSNSSSSSNQSPPAA
PA*

BS10995.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Ect4-PE 1052 CG34373-PE 1..1052 1..1052 5439 100 Plus
Ect4-PI 1730 CG43119-PI 531..1416 166..1046 4307 95 Plus
Ect4-PH 1386 CG34373-PH 187..1072 166..1046 4307 95 Plus
Ect4-PG 1562 CG34373-PG 363..1248 166..1046 4307 95 Plus
Ect4-PF 1360 CG34373-PF 187..1072 166..1046 4307 95 Plus