Clone BS11005 Report

Search the DGRC for BS11005

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:110
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptRanbp21-RA
Protein status:BS11005.pep: full length peptide match
Sequenced Size:3758

Clone Sequence Records

BS11005.3prime Sequence

926 bp (855 high quality bases) assembled on 2006-04-19

> BS11005.3prime
ATGGTCTAGAAAGCTTTCACTTCTCCGGCCCAAAGAGCCTGGCCAGACTC
GCGTTCTGATTGCTATCCATGATGTCAGCCGTGGTGCCCATGGATCCCTT
GGCCTTGTGCGACTGCATGGGCGGCAGATTGGCTATCTGCACCTCGTGCC
GGAACAACTGGTTCACGCTGCGTCCGACCAGCTGGGCGGTCAGCTTTTTG
AAGATGTCCTTCTTGGCGCGATCCACTTTGTTGCCCTTGACGGGCGCCAC
GGCAATCTTTTCGTCGAACTTTTGAATGTCGGCCGCATTCACGCTGGGGA
TATGCTGCAGCACTTCGCTGAGAATGGGGAACTGCGGACGGAGCAGCTCG
TAGAACTGCACGCCCAGCGTCACCAGGCCCGATTGGTTGGCCTCGTGCTG
ACCGTGCACCTGCATGCCCTGCAGGACGGCGGTAAAGGCCGTGACGGCCT
TGTTCTCGTCCATTAGTTTCTCGGCGGCCAGGAAACGCATCACGGGCGCT
GCGATGTTGACAGCCTTCATGCTGCACATGCCGTCGTTCCAGGCGATGGC
TTTTAGCAAGGTCATGAGCACATAATTGCCAATGAGTCCGTTGCGCAGCA
GCTTGCCGCCCAAGTCGCTTATGATGTCCGAGAGCAGTGCCGACTGGATT
GCTCGCGATTGCGGTGCGCTGTCCATCGAGTGCTCCTCATTCTCCATGGC
CACAGAATTGCTGTTGGCATTGGCGCCAGCTGCCACATGATCGGCTCCAA
TTTGGCCGCCCACCAGCGCGATCTTTAGCACGTCCAAATACTCGCGCGTC
AGCGTGCGATTGAGCTGATCCTCCAGCACCTCCTGCGTATCGTTTACCTC
GCCGTCCAGCTGGCCGCTTTCGTAGAGCGAGGCGATGTAGATCCAGCGGC
GCGTGAGGCGTTCGCACATCAATGGC

BS11005.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12234-PA 3726 Ranbp21-RA 2817..3726 926..17 4550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp21-RB 5879 CG12234-RB 3701..4610 926..17 4550 100 Minus
Ranbp21-RA 5190 CG12234-RA 3295..4204 926..17 4550 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19647575..19648484 17..926 4550 100 Plus
Blast to na_te.dros performed on 2015-02-09 03:40:06 has no hits.

BS11005.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:55 Download gff for BS11005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12234-PA 2817..3726 17..926 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:22:25 Download gff for BS11005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12234-PA 2817..3726 17..926 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:57:16 Download gff for BS11005.3prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 3222..4131 17..926 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:28:20 Download gff for BS11005.3prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 3295..4204 17..926 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:28:20 Download gff for BS11005.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19647575..19648484 17..926 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:57:16 Download gff for BS11005.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19541608..19542517 17..926 100   Plus

BS11005.5prime Sequence

865 bp (862 high quality bases) assembled on 2006-04-19

> BS11005.5prime
GAAGTTATCAGTCGACATGTCCCAGCACGGAGGCACCGAGGCTCTGGCCG
CCGAACTGGCCTCGGCCATCGATCTAGTCATGAACCCGATGACACAGCAA
CAGGCGCGCCTGGAGGCCTACATGGCCTGTGAGCGGTTTAAGGAGGAGTC
GCCAATGTGCGCCCAGGTGGGCCTATTCCTGGCCAGCTCGCCGCAGTCTA
ACCAGCAAGTGCGACACTTTGGCCTGCAGCTGATCGAGTACACAATCAAG
TACCGATGGAATTGCATTACGCACGAGGAGAAGGTGTACATTAAGGACAA
TGCCATCAAGATGCTGAACGTGGGCGTGGGCCCGGCGGAGGACCGCTCGC
TGCTGCCCACGAAGGACGCGCTGTCGCGCATCATCGTCGAGATGATCAAG
CGCGAGTGGCCGCAGCAGTGGTCCGACCTGCTGCCGGAGCTAAGCCAGGC
CTGCACCAAGGGCGAGGCCCAAACGGAGCTGGTGCTTCTGGTCTTCTTGC
GACTGGTGGAGGACGTGGCCCTATTACAGACAATCGAGTCGAATCAGCGG
CGAAAGGACATGTACCAGGCGCTAAACAACAACATGAACGACATCTTCGA
GTTCTTCCTGCGCCTGGTGGAGCAGCATGTGACTGCGTTCCGCGAGACAA
CGCGTCTGTGCAACTACACCAAGGCGAACGCGCACAGCCGTGTCGTCGAG
ATGGTACTGCTCACGCTGAGCGGCTTCGTCGAGTGGGTCAGCATCCAGCA
CATCATGTCCAGCAATGGCAAACTGATGCACTTCCTCTGCATCCTGCTCA
ACGACAAAGCATTCCAATGCAATGCGGCCGAGTGCCTGGCGCAGATCACG
AACCGCAAGGGCCAG

BS11005.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12234-PA 3726 Ranbp21-RA 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp21-RB 5879 CG12234-RB 885..1733 17..865 4245 100 Plus
Ranbp21-RA 5190 CG12234-RA 479..1327 17..865 4245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19650452..19651300 865..17 4245 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:16:45 has no hits.

BS11005.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:55:56 Download gff for BS11005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12234-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:22:26 Download gff for BS11005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12234-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:19:37 Download gff for BS11005.5prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 402..1254 10..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:09:00 Download gff for BS11005.5prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 475..1327 10..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:09:00 Download gff for BS11005.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19650452..19651304 10..865 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:19:37 Download gff for BS11005.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19544485..19545337 10..865 99   Minus

BS11005.complete Sequence

3758 bp assembled on 2012-04-25

GenBank Submission: KX804870

> BS11005.complete
GAAGTTATCAGTCGACATGTCCCAGCACGGAGGCACCGAGGCTCTGGCCG
CCGAACTGGCCTCGGCCATCGATCTAGTCATGAACCCGATGACACAGCAA
CAGGCGCGCCTGGAGGCCTACATGGCCTGTGAGCGGTTTAAGGAGGAGTC
GCCAATGTGCGCCCAGGTGGGCCTATTCCTGGCCAGCTCGCCGCAGTCTA
ACCAGCAAGTGCGACACTTTGGCCTGCAGCTGATCGAGTACACAATCAAG
TACCGATGGAATTGCATTACGCACGAGGAGAAGGTGTACATTAAGGACAA
TGCCATCAAGATGCTGAACGTGGGCGTGGGCCCGGCGGAGGACCGCTCGC
TGCTGCCCACGAAGGACGCGCTGTCGCGCATCATCGTCGAGATGATCAAG
CGCGAGTGGCCGCAGCAGTGGTCCGACCTGCTGCCGGAGCTAAGCCAGGC
CTGCACCAAGGGCGAGGCCCAAACGGAGCTGGTGCTTCTGGTCTTCTTGC
GACTGGTGGAGGACGTGGCCCTATTACAGACAATCGAGTCGAATCAGCGG
CGAAAGGACATGTACCAGGCGCTAAACAACAACATGAACGACATCTTCGA
GTTCTTCCTGCGCCTGGTGGAGCAGCATGTGACTGCGTTCCGCGAGACAA
CGCGTCTGTGCAACTACACCAAGGCGAACGCGCACAGCCGTGTCGTCGAG
ATGGTACTGCTCACGCTGAGCGGCTTCGTCGAGTGGGTCAGCATCCAGCA
CATCATGTCCAGCAATGGCAAACTGATGCACTTCCTCTGCATCCTGCTCA
ACGACAAAGCATTCCAATGCAATGCGGCCGAGTGCCTGGCGCAGATCACG
AACCGCAAGGGCCAGACCAAGGAGCGAAAGCCGTTGCTTCAGCTGTTCAA
CGAGGAGCCGCTGCGCTACATCTACCAGGCCAGTCAGATACCGGCCGACA
CAAGTTCCACACTGGCCGTCGAGCAGCACCTCAACTTCCTTAAGAAGTTG
CTGCAAGTGCTGAACGGCATGGCGCAGCAACTGGTGGCGCTTTGGGGCAA
GGACGACGCCACGCAACGACCAGTGCACCTGGAAGTCCTTCTCGAATGCC
TATTGCTGCTCGTCCAGCATCCATCGCTGGGCCTCTCGCATGGGTCGGCG
CTCATTTGGCAGCTGCTGCTTAAGCATGAGCCCTCCTCCAAAGACTTCGC
CATGGTCAACTACATTCCCAAGCTCATCCACACGATTGCGCCCAGGATCG
TGAAGCTGCCATATCCTGCCTCCGCTAGCTCGCCTGCCAGCCTCTCCACG
GAGGCATATATTCGACTAGAACACGATAGTGAAGAGGAGTACGCGCTCTA
CTTTTTCCGCTGCCGGACCGACTTCCTTGAGATTTTCCGCCTGGCCACCC
TGGTGCAGCCGTTGGTCACGTATGGCTACTGCGAACAGTGGCTGCAGCAA
CGACTGCGAAACGCGCAGATTGAAGCGGACGCGGAGGTCAAGAGCGGCAA
CGTGTCGTGCAGCGTTCTGGATCCAGTATACCTGGAATGGGATGCGCTGG
TCAGTGTGTTGGACGGCGTGCTAAGCCGCATTCTCCTCGTGGCGGAACGC
CCATCTGTGCCGGCAGGACTGCGACTCTTGGAAGAATGCCTCAAACTGGA
GACAATCAATCCGCTGACATACTCGATTCTGCTGTCCTGCATTTCGGCCC
TGTTCGTCTTTCTGAGCATGTCCGCCTGTCAGATTACGGCGACCAACTGC
GTGGCCATGAGCGGAGTAAGTCTGTTGCCGCGAGTGCTTGACAAGATCTT
CCGAGCACTGGTGATGAAGCCCCCCAACGAACTGGAAAAGGTGCAGGCCA
AGTCCGCCAAGAATCTTCGACGACACGCCGCCTCGCTGCTGGTGAAGCTG
GCCCACAAGTATCCGCTGCTGCTGCTTCCCGTTTTCGAGCAGATCAACGG
CCACGTGGAGCTGTTGCTCAAGGAGCCCGGTAAGCATCAGCTGTGCCGTT
TGATGCGCACCACGTTGCAGGAGGCACTCATCCTAATCTCGAACCATTTC
TGCGACTTCGAGCGGCAGACGCTGTTCATTGAGCACATCGTGCAGGATAA
GCGCACCGAGTGGCTGGCCTTTGGCGATGCCCTCAAATCCCCGTTGGACT
TCATGAGCTTCGTTGGCCTGGACAAGCCTCCCATTTTCGCCGTGGAAGGA
GCTGTCACGCTCCAGAACCGATCACGCCTCTTGGATGCCCTGCACGTCGT
CCTCGGCGTGGTCAAGCGCTGCACTTGGCCAGACGATCCGGAGCGCGCAC
AGCGCGGAGGATTTGTCATTGGCTGCACGGAGCTGGGCAACCCGATCTGC
AGAAACCCGGCCACCAAGCACATTGTACCACTGCTGTCGCACGTGCTGAG
CTTGATGCGTGTGCTTAATGAGCTGTTTGCTCCGGAGGCTCTGCAAGCGC
TCTCCGAGGGTTATCGTGGAATCCATGGGATGATGGAGCACGAGAAGAAG
CTTCTAATGGGCATATGCGCTCTGCCCACCGACCCCTTGGACACGACCAT
CCGCAGCGAACCGACGGCCTTCGAAAAGATGCAGACCTTCATGATGATGG
TCACCGAGGGTTGCTACCACCTGATGGGCTCAGCTGGACCATCGCTGGGA
CGCGATCTTTACCAGCTCATGGGACTGTCGGACGCCATTGTGACGAATGT
GTTTAGCCGCATGGACTTGGTGCCCGATTACCGCCTGCGCCCAATCATAA
GGGTCTTCTTCAAGCCCTTCGTCTACTCGTGCCCGCCCAGCTTCTACGAC
AGCGTTCTGGTGCCGCTGTTTGCCCACTTGGCGCCATTGATGTGCGAACG
CCTCACGCGCCGCTGGATCTACATCGCCTCGCTCTACGAAAGCGGCCAGC
TGGACGGCGAGGTAAACGATACGCAGGAGGTGCTGGAGGATCAGCTCAAT
CGCACGCTGACGCGCGAGTATTTGGACGTGCTAAAGATCGCGCTGGTGGG
CGGCCAAATTGGAGCCGATCATGTGGCAGCTGGCGCCAATGCCAACAGCA
ATTCTGTGGCCATGGAGAATGAGGAGCACTCGATGGACAGCGCACCGCAA
TCGCGAGCAATCCAGTCGGCACTGCTCTCGGACATCATAAGCGACTTGGG
CGGCAAGCTGCTGCGCAACGGACTCATTGGCAATTATGTGCTCATGACCT
TGCTAAAAGCCATCGCCTGGAACGACGGCATGTGCAGCATGAAGGCTGTC
AACATCGCAGCGCCCGTGATGCGTTTCCTGGCCGCCGAGAAACTAATGGA
CGAGAACAAGGCCGTCACGGCCTTTACCGCCGTCCTGCAGGGCATGCAGG
TGCACGGTCAGCACGAGGCCAACCAATCGGGCCTGGTGACGCTGGGCGTG
CAGTTCTACGAGCTGCTCCGTCCGCAGTTCCCCATTCTCAGCGAAGTGCT
GCAGCATATCCCCAGCGTGAATGCGGCCGACATTCAAAAGTTCGACGAAA
AGATTGCCGTGGCGCCCGTCAAGGGCAACAAAGTGGATCGCGCCAAGAAG
GACATCTTCAAAAAGCTGACCGCCCAGCTGGTCGGACGCAGCGTGAACCA
GTTGTTCCGGCACGAGGTGCAGATAGCCAATCTGCCGCCCATGCAGTCGC
ACAAGGCCAAGGGATCCATGGGCACCACGGCTGACATCATGGATAGCAAT
CAGAACGCGAGTCTGGCCAGGCTCTTTGGGCCGGAGAAGTGAAAGCTTTC
TAGACCAT

BS11005.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp21-RB 3726 CG12234-PB 1..3726 17..3742 18630 100 Plus
Ranbp21-RA 3726 CG12234-PA 1..3726 17..3742 18630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp21-RB 5879 CG12234-RB 885..4610 17..3742 18630 100 Plus
Ranbp21-RA 5190 CG12234-RA 479..4204 17..3742 18630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19647575..19651300 3742..17 18630 100 Minus
Blast to na_te.dros performed on 2014-11-28 12:11:27 has no hits.

BS11005.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:21:19 Download gff for BS11005.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 537..4266 10..3742 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:32 Download gff for BS11005.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 541..4265 17..3741 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:33 Download gff for BS11005.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 406..4130 17..3741 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:15:03 Download gff for BS11005.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 541..4265 17..3741 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:07 Download gff for BS11005.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 479..4203 17..3741 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:07 Download gff for BS11005.complete
Subject Subject Range Query Range Percent Splice Strand
X 19647576..19651300 17..3741 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:33 Download gff for BS11005.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19541609..19545333 17..3741 100   Minus

BS11005.pep Sequence

Translation from 16 to 3741

> BS11005.pep
MSQHGGTEALAAELASAIDLVMNPMTQQQARLEAYMACERFKEESPMCAQ
VGLFLASSPQSNQQVRHFGLQLIEYTIKYRWNCITHEEKVYIKDNAIKML
NVGVGPAEDRSLLPTKDALSRIIVEMIKREWPQQWSDLLPELSQACTKGE
AQTELVLLVFLRLVEDVALLQTIESNQRRKDMYQALNNNMNDIFEFFLRL
VEQHVTAFRETTRLCNYTKANAHSRVVEMVLLTLSGFVEWVSIQHIMSSN
GKLMHFLCILLNDKAFQCNAAECLAQITNRKGQTKERKPLLQLFNEEPLR
YIYQASQIPADTSSTLAVEQHLNFLKKLLQVLNGMAQQLVALWGKDDATQ
RPVHLEVLLECLLLLVQHPSLGLSHGSALIWQLLLKHEPSSKDFAMVNYI
PKLIHTIAPRIVKLPYPASASSPASLSTEAYIRLEHDSEEEYALYFFRCR
TDFLEIFRLATLVQPLVTYGYCEQWLQQRLRNAQIEADAEVKSGNVSCSV
LDPVYLEWDALVSVLDGVLSRILLVAERPSVPAGLRLLEECLKLETINPL
TYSILLSCISALFVFLSMSACQITATNCVAMSGVSLLPRVLDKIFRALVM
KPPNELEKVQAKSAKNLRRHAASLLVKLAHKYPLLLLPVFEQINGHVELL
LKEPGKHQLCRLMRTTLQEALILISNHFCDFERQTLFIEHIVQDKRTEWL
AFGDALKSPLDFMSFVGLDKPPIFAVEGAVTLQNRSRLLDALHVVLGVVK
RCTWPDDPERAQRGGFVIGCTELGNPICRNPATKHIVPLLSHVLSLMRVL
NELFAPEALQALSEGYRGIHGMMEHEKKLLMGICALPTDPLDTTIRSEPT
AFEKMQTFMMMVTEGCYHLMGSAGPSLGRDLYQLMGLSDAIVTNVFSRMD
LVPDYRLRPIIRVFFKPFVYSCPPSFYDSVLVPLFAHLAPLMCERLTRRW
IYIASLYESGQLDGEVNDTQEVLEDQLNRTLTREYLDVLKIALVGGQIGA
DHVAAGANANSNSVAMENEEHSMDSAPQSRAIQSALLSDIISDLGGKLLR
NGLIGNYVLMTLLKAIAWNDGMCSMKAVNIAAPVMRFLAAEKLMDENKAV
TAFTAVLQGMQVHGQHEANQSGLVTLGVQFYELLRPQFPILSEVLQHIPS
VNAADIQKFDEKIAVAPVKGNKVDRAKKDIFKKLTAQLVGRSVNQLFRHE
VQIANLPPMQSHKAKGSMGTTADIMDSNQNASLARLFGPEK*

BS11005.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp21-PB 1241 CG12234-PB 1..1241 1..1241 6354 100 Plus
Ranbp21-PA 1241 CG12234-PA 1..1241 1..1241 6354 100 Plus