Clone Sequence Records
BS11011.complete Sequence
4586 bp assembled on 2009-12-07
GenBank Submission: KX806306
> BS11011.complete
GAAGTTATCAGTCGACATGGCATCCACGTCGTCGTCGGCTTCCACGACGG
CGGGATCCTCCGGCGCGGCAGGCGGAGGAGCAGCCACGCCCATCTCAACG
CCCTCGACGCCCCAGCCGTCTGGCGTGAGCAGCGGACCCGGCAATAATGG
CAACAACAACAACAACCATCACAACAACACCCTGGTCTCACCATCCGGGA
ACAACAACTTGATGACGCCCGTCCAGGCATTCACTCCAACCGGACAGCCA
GTGTACAATCCACCCGTCTATATGTCCGCCCACGGAGGACACCCGCACGC
CGGAGCCCACTACCCGGCCATGATCCCCGCTCCGATGCCCAGCAATCACG
TCTATGTGAACAACGTCACTGCCAATGTGAACCTGCATGGCTGGCCGCAC
GGTGTTCCGGCTTATATGCCACCCGGAGGTCAGCATCACTACATTGGACA
CGGCGACATGCCCCAGGAGCAGGGCAACACGGTGATGCCGCACCTGCAGC
CTGTGCCCATTAATTTGGCGCCCCAGGGCGGATCTCCGAATCCCCATGGT
CCTAGAATGGGTGGCGGACGGATGCGCGAACGAGGTCGTCCCCGTGGCGG
TGGACCGCGACGCAATGACTACCATGGGCCACGTCACCTCCAGCAGCAGC
AACTGATCACCCTTCCGCCGCAGCAGCAACTGCCACCGCCGGACGGAGCC
AATCCCGGGCTGCAGCTTCAGCCGGATCAGATTGGTCAGCAGTTGGCGCC
GCCGGAGGCGCACATGCAGCACTTACAGCAGTACTACGCGGCGCCACCAA
CCTACGCCTACGGGCCATATCCCTCTCCCTACTTCACACCCCAACATGCC
AATGTGCAGCCTCCCCCCAATGCCACTGCTGCCCAACAGGCAACTGGAAC
GCCGCTCTTCATCTCCGGACCGCTGATGTATAATCCTGCGTGGTTCAACC
ACGGTGGGTACATCTACCCCATGATGCATCCGGCTGAGTACCAGTATGTA
CCCGAAGACGCTGGCCAGCCGGGAGTGGATGAACGTGGAGCTCAGCCGGA
CGGCGGAATGACCCAGATCTGGCACCAGGGCCCCATGTACGCAGAGGACT
TCGAAGCGCTACAGCAGCAGCAACAACAGCAACAGGTGGCTGTGCATCCC
AATGGAGGTGCTGTCAGTGTAGCCGATGAGCTCAACCACAATAGCTCATC
CCTGCCCTCCTCGGAGACGTCGAGCATGATCAGTCCAAACTATCCCATCT
ACGATCCACAGATGCACGAAATGCAGCACCAAATGGGCGTGATGCAGATA
TTCGACGATGGTCAGATGGCCGCCCTGCAGCCAATCCATCCAGGAGCGGG
TCCGCTACCGCAGTACGAGGACGAGCTAGCCGAGTGCGGAGCACCGCCAC
CAGGCCCTATTCCGGTGGCCTGGACTGCTGCCATGCCCCTCCCTCCGGAT
GCAGTCCAGCCAGCTCTGCTGCCGCCACCGCCGCATCACATTTTGCAGCA
AACGTCGCCCCTGTTAATCGAACAGCCAGCCCAGTTGGTTCAGGCGCAAC
CTCCGCAGCCACCAACACCCACTCCCCAACAGCAGCAGCAACAACAACAT
CAGGAGCAAACGGCTGACAAGAGTTTGACACAGAACAACAACGAAGTGGT
GGCCTTGGATGAAAAGTTGGCCAACGAGAAGCAGCAGCAAATCGATTTCC
ACCAGCAGCAACAGGAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAG
CAGCAGCTTCATCCACTAGCACAGCAGCAGCAGCAAGAAGAGCAGCAGCA
ACCGCAGCAACTACAGCCGCTGCAAACCGAAAAACCGCCAACGAAAGTGC
CAAACCTTGTTGTAGCTACAGTGGCACCTCAGCTGCAACAGCCACCGCTG
CAGCAGCATCAGCAACAGCAAACATCACCTGTGGTGGTGTCGCCAAAACA
GCAGCAGCAGCAGTCACAAGCTGCGCACCAGAATAGCTACCATGATCAGC
ATCCTTTGCCGCAGCAGCAGCAACCGCAGCAGCAGCAACCGCAGCCACAG
CGCAAACCCTCGCAGCAATACAATCAAGCGCAGCAGCAACAGGTGCGTCG
TAAGTACTCCTCAGAGTACAATCACCATCATCACCAGCACGGCAGCAGCG
ACACGGGCATCCAAACTACCAAGACCATGTCCTGGACCAATTCAGCTCAG
CACAAAAAGTCGACGCAGTCGGTGTCGGTCACCGCTTCTCCCAATAGTGT
AAACAATGGACCTGGAGTGGGTGCTGCGGGCAAAGCCAACTATAGTCACA
CCACTAAGACATTTACCAATCAGCAGCATTACCAGCAGCAACACTATCAC
ACTCAGAACAGCTATAACAACAACAGCAGCGGCGGAGGAAGCAGTAGCAA
CAGCAGTTCGAGCAGCAGCAACAATCAGCCCCAGGTGCGCAACTATGGCA
CCATGAAGATGCCCTCTTCGCCGGTGGCTTGGACAGCGCCAACACCGGAG
CGCAAAAACAGCCAACAGGCAGCAGCGGCACCGGCAGCAGCAACAGCGTC
TGCAGCTCCCGTGGCAATCACAACAGTAACTACCTCAACGGCCAGCATTA
CGGCTACCCCAAATCAATTTCAACCGGAGACCGGCAGCAGTAGTGCATCA
CCAGCCGTAGCTGCCGCGCAGCAACAGCAGCCTGCAGCACAGCAACATGC
GCAGGCCGCACAAACAGGAGCAGCAGCAGCTCCAAGCAAGTCCCACAGCA
ACTATGCTTCTTCTAAAAAGCATCAGAGCTATGAGCCAGTAGTGCTGAGC
TCCGTGGTGGCCACCAGTTCATCAGCCAATCCGCAGCCGCAGCTAAATCT
TGCCCCACCTGCGCCACCAGCCTCGCAGAACAGCAGCGACAGTTCGCAGC
TTTCGTGGGCCAGTTTGTTTGCCAGCAACAAGCCCGTGGCCAAGGTGGCG
CCCTACGAAGCCAGCAAAATTGCACAGCAGCAGCCATCCCATCCAGTGCT
TCAATTGGCTCCTCCGCAGCCAGCTCAAGTGGCGGCTGCCGCCCCAGTTG
CTCAGCTGTCGTCGCCTCCTCAGAATTTGCCCCTGCCTACGGCTCACCAA
CAGTCACAGTTACCAGCACCTGTGCCGGCGCCCACGGCTCCGCTGGTCAC
TCCAGGAGCGCTCTCCTATTCGGCTGCATCCGCTCAGGCAGTTCCAGCTC
CCAGCCCCGCGTCGGCATCCGTCAAGCCCCTCAAGCCGGAACCACCGCGT
CCTGTGCAGCAGCAACTGGATGAGTGGACCAGCAAGTACGCTGAGTACCT
GACGCGCCACAAGACCAATTTGGCGTCGATCAGCTTGCGTCCCCGAGGAC
TGACCAACAGGTCGAACTATTGCTACATCAACTCGATCCTGCAGGCACTG
CTCGGCTGCTCGCCGTTCTACAACCTGCTGCGCTCCATTCCCAAGCAGGC
GGCTGTCCTGAGCGAGGTCAAAACGCCCACTGTGAACGCCATGATGTCTT
TTATGACCAACTTTTCATCGTTGCCCAGCGGTCTTCGCCTGCGTCTGAAC
AACCTTAACAAGGGATCGCAAAGCAAGGGCAAGGACGATTTTGTGGGCTC
AGATTTGCAATGCGACATGGCCTTTGAACCCACAGAGATCTACAAGCTGT
GGAACGACAGTCGCGAGGAGCATGTCGAAGGTCGTCAAGAGGACGCCGAA
GAATTCTTGGGCTACGTTCTAAACAAGCTGAACGACGAGATGCTGGAGGT
GATTAAGCTAATTGATAAGCCCACACCCCAGCAAAATGGTCAGGAACCCG
CGGAACCAGAGGATGGAGGCGATGTCTGGCAGATGATTTGCAACAATCGT
AATAAGGGCAGCGTAACCCGCCAGACCGACTTCGGACGCACTCCCGTAAG
CGATATCTTCCGAGGAGAACTGCGCTCCCGGCTGCAGCGTGAAGGAGAAC
ACTCCACGGATGTGATTCAGCCTTTCTTTACGCTTCAACTGAATATCGAA
AAAGCTGCATCTGTGAAGGAGGCACTGGAGATCCTTGTGGGTCGCGATCA
GCTGGAGGGAGTCACAGGCAGCAAAACCAAACAGGAGGTGGTGGCCTGGC
AGCAGATGACGCTGGAGAAACTGCCCGTCGTTCTGATATTGCATTTAAAG
TACTTCGACTACCGCTCTGATGGGTGCACTAAGATTTTGAAGAAGGTGGA
TTTCCCCGTGGAACTAAAGATCGATGCCAAAATCCTCGGCTCAAAGAAGA
CCTCGCAGAAGCAGCGCGCCTATCGTCTGTTTGCGGTTGTCTATCACGAT
GGCAAGGAGGCGTCGAAGGGGCACTACATCACGGACGTTTTCCACACGGG
CTACAGCAGCTGGCTGCGCTACGACGACAGCTCGGTGAAGCCGGTCAGCG
AGAAGCATGTCCTTCAGCCGCACACGCCTCGTGTGCCTTACCTGCTGTAC
TACCGCCGTTCAGACACCCTGCCACCGCAACAGCAGCAAACCCAGCAGCA
GAATGGCGGAGGATCAGGTGGAGTCGTGGGCAGCAGCTCATCATCATCGA
ATGCCGGGGATAACAAGTGAAAGCTTTCTAGACCAT
BS11011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32479-RC | 4554 | CG32479-PC | 1..4554 | 17..4570 | 22755 | 100 | Plus |
| CG32479-RA | 4554 | CG32479-PA | 1..4554 | 17..4570 | 22755 | 100 | Plus |
| CG32479-RB | 2394 | CG32479-PB | 1..2394 | 2177..4570 | 11955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32479-RC | 7873 | CG32479-RC | 181..4738 | 16..4573 | 22775 | 100 | Plus |
| CG32479-RA | 6346 | CG32479-RA | 447..5004 | 16..4573 | 22775 | 100 | Plus |
| CG32479-RB | 4530 | CG32479-RB | 228..3188 | 1613..4573 | 14790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 888296..890176 | 1613..3493 | 9390 | 99.9 | Plus |
| 3L | 28110227 | 3L | 873988..874881 | 470..1363 | 4470 | 100 | Plus |
| 3L | 28110227 | 3L | 873419..873876 | 16..473 | 2290 | 100 | Plus |
| 3L | 28110227 | 3L | 891835..892178 | 4230..4573 | 1720 | 100 | Plus |
| 3L | 28110227 | 3L | 890548..890805 | 3493..3750 | 1290 | 100 | Plus |
| 3L | 28110227 | 3L | 874948..875203 | 1362..1617 | 1265 | 99.6 | Plus |
| 3L | 28110227 | 3L | 891548..891776 | 4001..4229 | 1145 | 100 | Plus |
| 3L | 28110227 | 3L | 891004..891174 | 3830..4000 | 855 | 100 | Plus |
| 3L | 28110227 | 3L | 890863..890948 | 3747..3832 | 430 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2836 | 1677..2153 | 473 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2996 | 1541..2177 | 454 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2893 | 1577..2170 | 431 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2999 | 1546..2137 | 431 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..3038 | 1546..1973 | 389 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..7200 | 1577..2091 | 384 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2983 | 1750..2405 | 383 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2986 | 1521..2153 | 380 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2971 | 1862..2545 | 374 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2472..3002 | 1547..2095 | 368 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..3002 | 1908..2629 | 365 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2965 | 1798..2445 | 348 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..7059 | 1546..2094 | 347 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2876 | 2333..2892 | 339 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7199 | 1541..2039 | 337 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6511..6915 | 1704..2091 | 333 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..7178 | 2287..2752 | 319 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..7054 | 1876..2190 | 318 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2818 | 2357..2891 | 317 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2987 | 2031..2754 | 305 | 54.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..7001 | 1830..2096 | 304 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6503..6935 | 1678..2110 | 301 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2989 | 2287..2891 | 297 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..3030 | 2020..2730 | 289 | 55.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..7091 | 1515..1895 | 289 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6941 | 1942..2161 | 286 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6953 | 2330..2577 | 280 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6768..7198 | 1521..1921 | 273 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..7041 | 1521..1830 | 263 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6944 | 2502..2724 | 252 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..7113 | 2361..2753 | 251 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2759..3038 | 1520..1792 | 247 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2564 | 2483..2753 | 245 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2526 | 2520..2752 | 243 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6899 | 2280..2429 | 242 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6946 | 2520..2754 | 240 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6940 | 2280..2446 | 226 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6944 | 2484..2702 | 223 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2774..3032 | 1546..1801 | 215 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6945 | 2483..2682 | 208 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2365..2816 | 2319..2754 | 202 | 54.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1043..1146 | 2328..2433 | 200 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7005 | 2411..2697 | 190 | 58.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1036..1150 | 2306..2424 | 189 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..7006 | 2484..2735 | 181 | 60.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6571..6652 | 1550..1632 | 178 | 69.9 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8027..8108 | 1550..1632 | 178 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2251..2538 | 2370..2667 | 175 | 56.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1182 | 1542..1626 | 162 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1459..1593 | 2306..2445 | 147 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1515..1585 | 1538..1608 | 147 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6896 | 635..801 | 146 | 56.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1163 | 1942..2033 | 146 | 65.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 118..213 | 2329..2420 | 146 | 64.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9148..9243 | 2329..2420 | 146 | 64.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1149 | 1880..1962 | 144 | 66.7 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 631..736 | 1974..1872 | 144 | 64.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1148 | 2485..2556 | 140 | 71.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1176 | 2502..2617 | 135 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6947 | 605..810 | 133 | 54.8 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 627..800 | 2040..1859 | 133 | 58.2 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1154 | 2489..2574 | 129 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1538..1582 | 1876..1920 | 126 | 75.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1127 | 1567..1642 | 126 | 70.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7948..7988 | 1567..1607 | 124 | 78 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9392..9432 | 1567..1607 | 124 | 78 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3254..3381 | 1862..1995 | 124 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1507..1564 | 1550..1608 | 121 | 71.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1179 | 1531..1641 | 119 | 62 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1140 | 1862..1920 | 119 | 69.5 | Plus |
BS11011.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:05 Download gff for
BS11011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32479-RA | 444..4996 | 17..4569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:13 Download gff for
BS11011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32479-RA | 448..5000 | 17..4569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:35 Download gff for
BS11011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32479-RA | 444..4996 | 17..4569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:43 Download gff for
BS11011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32479-RA | 448..5000 | 17..4569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:43 Download gff for
BS11011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 874950..875199 | 1364..1613 | 100 | -> | Plus |
| 3L | 873420..873875 | 17..472 | 100 | -> | Plus |
| 3L | 873991..874881 | 473..1363 | 100 | -> | Plus |
| 3L | 888297..890175 | 1614..3492 | 99 | -> | Plus |
| 3L | 890548..890803 | 3493..3748 | 100 | -> | Plus |
| 3L | 890865..890948 | 3749..3832 | 100 | -> | Plus |
| 3L | 891007..891174 | 3833..4000 | 100 | -> | Plus |
| 3L | 891548..891776 | 4001..4229 | 100 | -> | Plus |
| 3L | 891835..892174 | 4230..4569 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:13 Download gff for
BS11011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 874950..875199 | 1364..1613 | 100 | -> | Plus |
| arm_3L | 873420..873875 | 17..472 | 100 | -> | Plus |
| arm_3L | 873991..874881 | 473..1363 | 100 | -> | Plus |
| arm_3L | 888297..890175 | 1614..3492 | 99 | -> | Plus |
| arm_3L | 890548..890803 | 3493..3748 | 100 | -> | Plus |
| arm_3L | 890865..890948 | 3749..3832 | 100 | -> | Plus |
| arm_3L | 891007..891174 | 3833..4000 | 100 | -> | Plus |
| arm_3L | 891548..891776 | 4001..4229 | 100 | -> | Plus |
| arm_3L | 891835..892174 | 4230..4569 | 100 | | Plus |
BS11011.3prime Sequence
857 bp (830 high quality bases) assembled on 2006-04-19
> BS11011.3prime
ATGGTCTAGAAAGCTTTCACTTGTTATCCCCGGCATTCGATGATGATGAG
CTGCTGCCCACGACTCCACCTGATCCTCCGCCATTCTGCTGCTGGGTTTG
CTGCTGTTGCGGTGGCAGGGTGTCTGAACGGCGGTAGTACAGCAGGTAAG
GCACACGAGGCGTGTGCGGCTGAAGGACATGCTTCTCGCTGACCGGCTTC
ACCGAGCTGTCGTCGTAGCGCAGCCAGCTGCTGTAGCCCGTGTGGAAAAC
GTCCGTGATGTAGTGCCCCTTCGACGCCTCCTTGCCATCGTGATAGACAA
CCGCAAACAGACGATAGGCGCGCTGCTTCTGCGAGGTCTTCTTTGAGCCG
AGGATTTTGGCATCGATCTTTAGTTCCACGGGGAAATCCACCTTCTTCAA
AATCTTAGTGCACCCATCAGAGCGGTAGTCGAAGTACTTTAAATGCAATA
TCAGAACGACGGGCAGTTTCTCCAGCGTCATCTGCTGCCAGGCCACCACC
TCCTGTTTGGTTTTGCTGCCTGTGACTCCCTCCAGCTGATCGCGACCCAC
AAGGATCTCCAGTGCCTCCTTCACAGATGCAGCTTTTTCGATATTCAGTT
GAAGCGTAAAGAAAGGCTGAATCACATCCGTGGAGTGTTCTCCTTCACGC
TGCAGCCGGGAGCGCAGTTCTCCTCGGAAGATATCGCTTACGGGAGTGCG
TCCGAAGTCGGTCTGGCGGGTTACGCTGCCCTTATTACGATTGTTGCAAA
TCATCTGCCAGACATCGCCTCCATCCTCTGGTTCCGCGGGTTCCTGACCA
TTTTGCTGGGGTGTGGGCTTATCAATTAGCTTAATCACCTCCAGCATCTC
GTCGTTC
BS11011.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32479-PA | 4554 | CG32479-RA | 3714..4554 | 857..17 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32479-RC | 7873 | CG32479-RC | 3895..4738 | 857..14 | 4220 | 100 | Minus |
| CG32479-RB | 4530 | CG32479-RB | 2345..3188 | 857..14 | 4220 | 100 | Minus |
| CG32479-RA | 6346 | CG32479-RA | 4161..5004 | 857..14 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 891835..892178 | 357..14 | 1720 | 100 | Minus |
| 3L | 28110227 | 3L | 891548..891776 | 586..358 | 1145 | 100 | Minus |
| 3L | 28110227 | 3L | 891004..891174 | 757..587 | 855 | 100 | Minus |
| 3L | 28110227 | 3L | 890863..890948 | 840..755 | 430 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 13:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tc3 | 1743 | Tc3 TC3 1743bp | 844..894 | 413..363 | 111 | 68.6 | Minus |
BS11011.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:02 Download gff for
BS11011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32479-PA | 3714..4554 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:22:33 Download gff for
BS11011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32479-PA | 3714..4554 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:28:42 Download gff for
BS11011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32479-RA | 4161..5004 | 14..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:58:10 Download gff for
BS11011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32479-RA | 4161..5004 | 14..857 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:58:10 Download gff for
BS11011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 891835..892178 | 14..357 | 100 | | Minus |
| 3L | 890785..890803 | 839..857 | 100 | -> | Minus |
| 3L | 890865..890948 | 755..838 | 100 | -> | Minus |
| 3L | 891007..891174 | 587..754 | 100 | -> | Minus |
| 3L | 891548..891776 | 358..586 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:28:42 Download gff for
BS11011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 890785..890803 | 839..857 | 100 | -> | Minus |
| arm_3L | 890865..890948 | 755..838 | 100 | -> | Minus |
| arm_3L | 891007..891174 | 587..754 | 100 | -> | Minus |
| arm_3L | 891548..891776 | 358..586 | 100 | -> | Minus |
| arm_3L | 891835..892178 | 14..357 | 100 | | Minus |
BS11011.5prime Sequence
813 bp (812 high quality bases) assembled on 2006-04-19
> BS11011.5prime
GAAGTTATCAGTCGACATGGCATCCACGTCGTCGTCGGCTTCCACGACGG
CGGGATCCTCCGGCGCGGCAGGCGGAGGAGCAGCCACGCCCATCTCAACG
CCCTCGACGCCCCAGCCGTCTGGCGTGAGCAGCGGACCCGGCAATAATGG
CAACAACAACAACAACCATCACAACAACACCCTGGTCTCACCATCCGGGA
ACAACAACTTGATGACGCCCGTCCAGGCATTCACTCCAACCGGACAGCCA
GTGTACAATCCACCCGTCTATATGTCCGCCCACGGAGGACACCCGCACGC
CGGAGCCCACTACCCGGCCATGATCCCCGCTCCGATGCCCAGCAATCACG
TCTATGTGAACAACGTCACTGCCAATGTGAACCTGCATGGCTGGCCGCAC
GGTGTTCCGGCTTATATGCCACCCGGAGGTCAGCATCACTACATTGGACA
CGGCGACATGCCCCAGGAGCAGGGCAACACGGTGATGCCGCACCTGCAGC
CTGTGCCCATTAATTTGGCGCCCCAGGGCGGATCTCCGAATCCCCATGGT
CCTAGAATGGGTGGCGGACGGATGCGCGAACGAGGTCGTCCCCGTGGCGG
TGGACCGCGACGCAATGACTACCATGGGCCACGTCACCTCCAGCAGCAGC
AACTGATCACCCTTCCGCCGCAGCAGCAACTGCCACCGCCGGACGGAGCC
AATCCCGGGCTGCAGCTTCAGCCGGATCAGATTGGTCAGCAGTTGGCGCC
GCCGGAGGCGCACATGCAGCACTTACAGCAGTACTACGCGGCGCCACCAA
CCTACGCCTACGG
BS11011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32479-PA | 4554 | CG32479-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32479-RC | 7873 | CG32479-RC | 181..978 | 16..813 | 3990 | 100 | Plus |
| CG32479-RA | 6346 | CG32479-RA | 447..1244 | 16..813 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 873419..873876 | 16..473 | 2290 | 100 | Plus |
| 3L | 28110227 | 3L | 873988..874331 | 470..813 | 1720 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 05:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6896 | 635..801 | 146 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6947 | 605..810 | 133 | 54.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6920 | 612..801 | 132 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2546 | 628..804 | 121 | 55.8 | Plus |
| G2 | 3102 | G2 G2 3102bp | 436..476 | 55..94 | 112 | 78 | Plus |
BS11011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:04 Download gff for
BS11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32479-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:22:35 Download gff for
BS11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32479-PA | 1..797 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:12:54 Download gff for
BS11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32479-RA | 444..1244 | 10..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:45:01 Download gff for
BS11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32479-RA | 444..1244 | 10..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:45:01 Download gff for
BS11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 873416..873875 | 10..472 | 99 | -> | Plus |
| 3L | 873991..874331 | 473..813 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:12:54 Download gff for
BS11011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 873991..874331 | 473..813 | 100 | | Plus |
| arm_3L | 873416..873875 | 10..472 | 99 | -> | Plus |
BS11011.pep Sequence
Translation from 16 to 4569
> BS11011.pep
MASTSSSASTTAGSSGAAGGGAATPISTPSTPQPSGVSSGPGNNGNNNNN
HHNNTLVSPSGNNNLMTPVQAFTPTGQPVYNPPVYMSAHGGHPHAGAHYP
AMIPAPMPSNHVYVNNVTANVNLHGWPHGVPAYMPPGGQHHYIGHGDMPQ
EQGNTVMPHLQPVPINLAPQGGSPNPHGPRMGGGRMRERGRPRGGGPRRN
DYHGPRHLQQQQLITLPPQQQLPPPDGANPGLQLQPDQIGQQLAPPEAHM
QHLQQYYAAPPTYAYGPYPSPYFTPQHANVQPPPNATAAQQATGTPLFIS
GPLMYNPAWFNHGGYIYPMMHPAEYQYVPEDAGQPGVDERGAQPDGGMTQ
IWHQGPMYAEDFEALQQQQQQQQVAVHPNGGAVSVADELNHNSSSLPSSE
TSSMISPNYPIYDPQMHEMQHQMGVMQIFDDGQMAALQPIHPGAGPLPQY
EDELAECGAPPPGPIPVAWTAAMPLPPDAVQPALLPPPPHHILQQTSPLL
IEQPAQLVQAQPPQPPTPTPQQQQQQQHQEQTADKSLTQNNNEVVALDEK
LANEKQQQIDFHQQQQEQQQQQQQQQQQQQLHPLAQQQQQEEQQQPQQLQ
PLQTEKPPTKVPNLVVATVAPQLQQPPLQQHQQQQTSPVVVSPKQQQQQS
QAAHQNSYHDQHPLPQQQQPQQQQPQPQRKPSQQYNQAQQQQVRRKYSSE
YNHHHHQHGSSDTGIQTTKTMSWTNSAQHKKSTQSVSVTASPNSVNNGPG
VGAAGKANYSHTTKTFTNQQHYQQQHYHTQNSYNNNSSGGGSSSNSSSSS
SNNQPQVRNYGTMKMPSSPVAWTAPTPERKNSQQAAAAPAAATASAAPVA
ITTVTTSTASITATPNQFQPETGSSSASPAVAAAQQQQPAAQQHAQAAQT
GAAAAPSKSHSNYASSKKHQSYEPVVLSSVVATSSSANPQPQLNLAPPAP
PASQNSSDSSQLSWASLFASNKPVAKVAPYEASKIAQQQPSHPVLQLAPP
QPAQVAAAAPVAQLSSPPQNLPLPTAHQQSQLPAPVPAPTAPLVTPGALS
YSAASAQAVPAPSPASASVKPLKPEPPRPVQQQLDEWTSKYAEYLTRHKT
NLASISLRPRGLTNRSNYCYINSILQALLGCSPFYNLLRSIPKQAAVLSE
VKTPTVNAMMSFMTNFSSLPSGLRLRLNNLNKGSQSKGKDDFVGSDLQCD
MAFEPTEIYKLWNDSREEHVEGRQEDAEEFLGYVLNKLNDEMLEVIKLID
KPTPQQNGQEPAEPEDGGDVWQMICNNRNKGSVTRQTDFGRTPVSDIFRG
ELRSRLQREGEHSTDVIQPFFTLQLNIEKAASVKEALEILVGRDQLEGVT
GSKTKQEVVAWQQMTLEKLPVVLILHLKYFDYRSDGCTKILKKVDFPVEL
KIDAKILGSKKTSQKQRAYRLFAVVYHDGKEASKGHYITDVFHTGYSSWL
RYDDSSVKPVSEKHVLQPHTPRVPYLLYYRRSDTLPPQQQQTQQQNGGGS
GGVVGSSSSSSNAGDNK*
BS11011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32479-PC | 1517 | CG32479-PC | 1..1517 | 1..1517 | 8059 | 100 | Plus |
| CG32479-PA | 1517 | CG32479-PA | 1..1517 | 1..1517 | 8059 | 100 | Plus |
| CG32479-PB | 797 | CG32479-PB | 1..797 | 721..1517 | 4111 | 100 | Plus |
| kis-PF | 5191 | CG3696-PF | 2..1156 | 44..1113 | 339 | 22.7 | Plus |
| kis-PE | 5252 | CG3696-PE | 2..1156 | 44..1113 | 339 | 22.7 | Plus |
