Clone Sequence Records
BS11021.complete Sequence
2183 bp assembled on 2009-12-07
GenBank Submission: KX802701
> BS11021.complete
GAAGTTATCAGTCGACATGGATCGACGCCTGAGACGCCCGCGTCGCACGG
AAGACGTGTCCAGCGGTCCACTTCTGGCCCAGTCCAAGCAGCCCAGCCTC
CTGCCGGTGACCCGACGTACGGGCTCCGTGACAGCTGCGGGTGCCACCGC
CACCGCCACCGCCACCGCTGGTCCCGCCACCCGGACACGTGCCTCCCCGT
CACGCAACAAGGTCGTCGCACCGCCCTCGCCCGATCTTGGCCCGCGCACC
CGTCGCTCCAGCCGGCCGAGGTCGTCGGTGGGTCCGCTGACCGGATCGGG
ATCTGGTTCCTCGCTGCCCATCAAGGCCGCCATCAAGGCACGCACACCCA
TCCCAGAGGTTTCCGAGGTATCATCGCCTATTCGTTTGTCAACCAGCAAT
CTGCCCATGACATTGACCACCAACACATCCAGCGGCGCACCGAACAAAGC
ATTTAACACAAGCTCCGTGAACAGCGGCAACAGCTTCAGCCGTACCACTA
CCAGCAGCACCACCACAACCACGGAGCGCATCGAGATCCGTGCCGAGGGA
GACGGCGAGGTGGACACGGATTCCATTCGCAAACGCATAACCGAACGACT
GCGCAGATCGGTGTCGAAGACAATCTCAAATCTAGCTGGAACACCAGTGA
CAAACACCGAAGAGGGCAGTCGTTATAGTAGGAGTGTGTCCCGATCCGTC
TACGACGATGAGAAGTCCTCCAAGCGTAGTTACTCTACGGGTGAAGAGGA
TATTGATGAGGAGGATGAATTGGAGGAGGATCAGTTCCGTAGTTTCAATG
TAACCCGTAAATCGGCCACACCGGCGGAAATATCCTGCCGTCAGTTGAAG
GCTCCTAGAGAATTTGGCGGTTGGCTAGGCGCCTTCCTGTTCCTGCTACT
TCTGCCCACCGCCGTCTACTATTTGACATGGAGCTGTACGGCCAGAAACG
CCTGTCAGTTTAAGCACCTCAATCTGGGTATACTACTGGATGTTAACTAC
CTAACGCGCCAGGTGTTCCAGCCACGAGTGGTGGGTGCCTTTGCCGCCTA
TCAGGTGGTGGTATTTCTGCTGGTGGCACTGCTACCAGGACGAAGGGTTC
ATCTCACCCGCGAGACCTACAAGTTTAATTGTCTAGCAGTTTCGCTTACG
CTTTTGATTGCCAGTGGAGTGGCCGAGTATCTGAAGTATCCAGTGGTCAC
CTTCGTTCTGCGTCACTATCTGCGTTTCTGCATCTTTGGACTCGTTGGCG
CCTTTGTGGCAGCTGCTTGGAGCTACTGGCTGGTGGACACCGCCAAGTAC
AATGTGCTGCGCCAAACGCTGACCAATGATTATGGCAGGACTGGCAGCTT
TGTGGTGGACTTCGCGCTGGGCAGACAGCTCAATCCCAAGTGGCTAGGAC
GCGTGGATTGGAAACAGTTTCAGTACCGTCTCTCCCTGGTGACCACCTTG
ATCTATGCCACCTGCTACATCTACCAGACGCTCGTGTGGCCCCAGAAGCC
GCAGCTGGGTGAACAGGAGGGCTATCTCTACCAGGCCAAATACTACTGGA
ACAATGTAAATTATGATCCTGCCACCCTGTTCTCGGCCAGCTGCTTGCTG
TTCTACGTATTGGACGCCATTATTTTCGAGCACCACTTGAGCTCATCCTT
TGAGCTGCAACACGAAGGCTACGGCTGTTTGCTGCTCCTGCGCTACGCAG
CCACTCCATATCTGCTGACGGCGGTCACCAAGTATTTCTACGAGCAGCGT
GTACCCATCTCCTGCTGGTATGCTCCGCTGGCAGTGGCTGCTCTGCTGTC
TCTGGGATTGCTGGTCAAGCGATTCAGTTGCGCCTACAAGTACAAATACC
GATTGAACTCGCAAAGTCCGATCTTCGCCAACATCGAAACTATTCACACG
TATCAGGGAAGCCGTCTGCTGCTCAGCGGAATGTGGGGATGGGTACGCCA
GCCCAACTATCTAGGCGACATCGTGGCCCTGCTGGCCCTGGCTGCTCCCA
TGGCCCTGCGTCCGGCCTGGCCACCAGTTCTGGGTCTTAGTCTGATCATC
CTGCTCCTGCTCCATCGCGCCACCCGAGCGAACGCCCGGAATCAGGCGCG
CTATCACTCCTCCTGGCAGCGCTACAGCACCCAGGTGCGCAGCTACATCC
TGCCCAGGGTCTACTAAAAGCTTTCTAGACCAT
BS11021.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LBR-RC | 2226 | CG17952-PC | 75..2226 | 16..2167 | 10760 | 100 | Plus |
LBR-RA | 2151 | CG17952-PA | 1..2151 | 17..2167 | 10755 | 100 | Plus |
LBR-RB | 2151 | CG17952-PB | 1..2151 | 17..2167 | 10755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LBR-RC | 2792 | CG17952-RC | 243..2394 | 16..2167 | 10760 | 100 | Plus |
LBR-RA | 2701 | CG17952-RA | 152..2303 | 16..2167 | 10760 | 100 | Plus |
LBR-RB | 2719 | CG17952-RB | 170..2321 | 16..2167 | 10760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21721856..21723657 | 366..2167 | 9010 | 100 | Plus |
2R | 25286936 | 2R | 21720976..21721329 | 16..369 | 1770 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7368..7423 | 470..524 | 124 | 71.4 | Plus |
BS11021.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:23 Download gff for
BS11021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LBR-RC | 221..2369 | 17..2165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:39 Download gff for
BS11021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LBR-RB | 171..2319 | 17..2165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:34 Download gff for
BS11021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LBR-RC | 221..2369 | 17..2165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:16 Download gff for
BS11021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LBR-RB | 171..2319 | 17..2165 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:16 Download gff for
BS11021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21720977..21721327 | 17..367 | 100 | -> | Plus |
2R | 21721858..21723655 | 368..2165 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:39 Download gff for
BS11021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17608482..17608832 | 17..367 | 100 | -> | Plus |
arm_2R | 17609363..17611160 | 368..2165 | 100 | | Plus |
BS11021.3prime Sequence
873 bp (825 high quality bases) assembled on 2006-04-19
> BS11021.3prime
ATGGTCTAGAAAGCTTTTAGTAGACCCTGGGCAGGATGTAGCTGCGCACC
TGGGTGCTGTAGCGCTGCCAGGAGGAGTGATAGCGCGCCTGATTCCGGGC
GTTCGCTCGGGTGGCGCGATGGAGCAGGAGCAGGATGATCAGACTAAGAC
CCAGAACTGGTGGCCAGGCCGGACGCAGGGCCATGGGAGCAGCCAGGGCC
AGCAGGGCCACGATGTCGCCTAGATAGTTGGGCTGGCGTACCCATCCCCA
CATTCCGCTGAGCAGCAGACGGCTTCCCTGATACGTGTGAATAGTTTCGA
TGTTGGCGAAGATCGGACTTTGCGAGTTCAATCGGTATTTGTACTTGTAG
GCGCAACTGAATCGCTTGACCAGCAATCCCAGAGACAGCAGAGCAGCCAC
TGCCAGCGGAGCATACCAGCAGGAGATGGGTACACGCTGCTCGTAGAAAT
ACTTGGTGACCGCCGTCAGCAGATATGGAGTGGCTGCGTAGCGCAGGAGC
AGCAAACAGCCGTAGCCTTCGTGTTGCAGCTCAAAGGATGAGCTCAAGTG
GTGCTCGAAAATAATGGCGTCCAATACGTAGAACAGCAAGCAGCTGGCCG
AGAACAGGGTGGCAGGATCATAATTTACATTGTTCCAGTAGTATTTGGCC
TGGTAGAGATAGCCCTCCTGTTCACCCAGCTGCGGCTTCTGGGGCCACAC
GAGCGTCTGGTAGATGTAGCAGGTGGCATAGATCAAGGTGGTCACCAGGG
AGAGACGGTACTGAAACTGTTTCCAATCCACGCGTCCTAGCCACTTGGGA
TTGAGCTGTCTGCCCAGCGCGAAGTCCACCACAAAGCTGCCAGTCCTGCC
CTAATCATTGGTCAGCGTTTGGC
BS11021.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17952-PB | 2151 | LBR-RB | 1295..2151 | 873..17 | 4260 | 99.8 | Minus |
CG17952-PA | 2151 | LBR-RA | 1295..2151 | 873..17 | 4260 | 99.8 | Minus |
CG17952-PC | 2226 | LBR-RC | 1370..2226 | 873..17 | 4260 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LBR-RC | 2792 | CG17952-RC | 1538..2394 | 873..17 | 4270 | 99.9 | Minus |
LBR-RA | 2701 | CG17952-RA | 1447..2303 | 873..17 | 4270 | 99.9 | Minus |
LBR-RB | 2719 | CG17952-RB | 1465..2321 | 873..17 | 4270 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21722801..21723657 | 873..17 | 4270 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:11:52 has no hits.
BS11021.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:23 Download gff for
BS11021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LBR-PA | 1295..2151 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:00 Download gff for
BS11021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17952-PC | 1370..2226 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:55:16 Download gff for
BS11021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LBR-RB | 1465..2323 | 13..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:46 Download gff for
BS11021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LBR-RB | 1465..2323 | 13..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:46 Download gff for
BS11021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21722801..21723659 | 13..873 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:55:16 Download gff for
BS11021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17610306..17611164 | 13..873 | 99 | | Minus |
BS11021.5prime Sequence
856 bp (818 high quality bases) assembled on 2006-04-19
> BS11021.5prime
GAAGTTATCAGTCGACATGGATCGACGCCTGAGACGCCCGCGTCGCACGG
AAGACGTGTCCAGCGGTCCACTTCTGGCCCAGTCCAAGCAGCCCAGCCTC
CTGCCGGTGACCCGACGTACGGGCTCCGTGACAGCTGCGGGTGCCACCGC
CACCGCCACCGCCACCGCTGGTCCCGCCACCCGGACACGTGCCTCCCCGT
CACGCAACAAGGTCGTCGCACCGCCCTCGCCCGATCTTGGCCCGCGCACC
CGTCGCTCCAGCCGGCCGAGGTCGTCGGTGGGTCCGCTGACCGGATCGGG
ATCTGGTTCCTCGCTGCCCATCAAGGCCGCCATCAAGGCACGCACACCCA
TCCCAGAGGTTTCCGAGGTATCATCGCCTATTCGTTTGTCAACCAGCAAT
CTGCCCATGACATTGACCACCAACACATCCAGCGGCGCACCGAACAAAGC
ATTTAACACAAGCTCCGTGAACAGCGGCAACAGCTTCAGCCGTACCACTA
CCAGCAGCACCACCACAACCACGGAGCGCATCGAGATCCGTGCCGAGGGA
GACGGCGAGGTGGACACGGATTCCATTCGCAAACGCATAACCGAACGACT
GCGCAGATCGGTGTCGAAGACAATCTCAAATCTAGCTGGAACACCAGTGA
CAAACACCGAAGAGGGCAGTCGTTATAGTAGGAGTGTGTCCCGATCCGTC
TACGACGATGAGAAGTCCTCCAAGCGTAGTTACTCTACGGGTGAAGAGGA
TATTGATGAGGAGGATGAATTGGAGGAGGATCAGTTCCGTAGTTTCAATG
TAACCCGTAAATCGGCCACACCGGCGGAAATATCCTGCCGTCAGTTGAAG
GCTCCT
BS11021.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17952-PC | 2226 | LBR-RC | 75..915 | 16..856 | 4205 | 100 | Plus |
CG17952-PB | 2151 | LBR-RB | 1..840 | 17..856 | 4200 | 100 | Plus |
CG17952-PA | 2151 | LBR-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LBR-RC | 2792 | CG17952-RC | 243..1083 | 16..856 | 4205 | 100 | Plus |
LBR-RA | 2701 | CG17952-RA | 152..992 | 16..856 | 4205 | 100 | Plus |
LBR-RB | 2719 | CG17952-RB | 170..1010 | 16..856 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21721856..21722346 | 366..856 | 2455 | 100 | Plus |
2R | 25286936 | 2R | 21720976..21721329 | 16..369 | 1770 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 10:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7368..7423 | 470..524 | 124 | 71.4 | Plus |
BS11021.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:24 Download gff for
BS11021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LBR-PC | 67..915 | 8..856 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:01 Download gff for
BS11021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17952-PC | 67..915 | 8..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:05:37 Download gff for
BS11021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LBR-RB | 162..1010 | 8..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:33 Download gff for
BS11021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LBR-RB | 162..1010 | 8..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:33 Download gff for
BS11021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21720968..21721327 | 8..367 | 98 | -> | Plus |
2R | 21721858..21722346 | 368..856 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:05:37 Download gff for
BS11021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17608473..17608832 | 8..367 | 98 | -> | Plus |
arm_2R | 17609363..17609851 | 368..856 | 100 | | Plus |
BS11021.pep Sequence
Translation from 16 to 2166
> BS11021.pep
MDRRLRRPRRTEDVSSGPLLAQSKQPSLLPVTRRTGSVTAAGATATATAT
AGPATRTRASPSRNKVVAPPSPDLGPRTRRSSRPRSSVGPLTGSGSGSSL
PIKAAIKARTPIPEVSEVSSPIRLSTSNLPMTLTTNTSSGAPNKAFNTSS
VNSGNSFSRTTTSSTTTTTERIEIRAEGDGEVDTDSIRKRITERLRRSVS
KTISNLAGTPVTNTEEGSRYSRSVSRSVYDDEKSSKRSYSTGEEDIDEED
ELEEDQFRSFNVTRKSATPAEISCRQLKAPREFGGWLGAFLFLLLLPTAV
YYLTWSCTARNACQFKHLNLGILLDVNYLTRQVFQPRVVGAFAAYQVVVF
LLVALLPGRRVHLTRETYKFNCLAVSLTLLIASGVAEYLKYPVVTFVLRH
YLRFCIFGLVGAFVAAAWSYWLVDTAKYNVLRQTLTNDYGRTGSFVVDFA
LGRQLNPKWLGRVDWKQFQYRLSLVTTLIYATCYIYQTLVWPQKPQLGEQ
EGYLYQAKYYWNNVNYDPATLFSASCLLFYVLDAIIFEHHLSSSFELQHE
GYGCLLLLRYAATPYLLTAVTKYFYEQRVPISCWYAPLAVAALLSLGLLV
KRFSCAYKYKYRLNSQSPIFANIETIHTYQGSRLLLSGMWGWVRQPNYLG
DIVALLALAAPMALRPAWPPVLGLSLIILLLLHRATRANARNQARYHSSW
QRYSTQVRSYILPRVY*
BS11021.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LBR-PC | 741 | CG17952-PC | 26..741 | 1..716 | 3697 | 100 | Plus |
LBR-PA | 716 | CG17952-PA | 1..716 | 1..716 | 3697 | 100 | Plus |
LBR-PB | 716 | CG17952-PB | 1..716 | 1..716 | 3697 | 100 | Plus |