Clone BS11021 Report

Search the DGRC for BS11021

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:110
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptLBR-RA
Protein status:BS11021.pep: full length peptide match
Sequenced Size:2183

Clone Sequence Records

BS11021.complete Sequence

2183 bp assembled on 2009-12-07

GenBank Submission: KX802701

> BS11021.complete
GAAGTTATCAGTCGACATGGATCGACGCCTGAGACGCCCGCGTCGCACGG
AAGACGTGTCCAGCGGTCCACTTCTGGCCCAGTCCAAGCAGCCCAGCCTC
CTGCCGGTGACCCGACGTACGGGCTCCGTGACAGCTGCGGGTGCCACCGC
CACCGCCACCGCCACCGCTGGTCCCGCCACCCGGACACGTGCCTCCCCGT
CACGCAACAAGGTCGTCGCACCGCCCTCGCCCGATCTTGGCCCGCGCACC
CGTCGCTCCAGCCGGCCGAGGTCGTCGGTGGGTCCGCTGACCGGATCGGG
ATCTGGTTCCTCGCTGCCCATCAAGGCCGCCATCAAGGCACGCACACCCA
TCCCAGAGGTTTCCGAGGTATCATCGCCTATTCGTTTGTCAACCAGCAAT
CTGCCCATGACATTGACCACCAACACATCCAGCGGCGCACCGAACAAAGC
ATTTAACACAAGCTCCGTGAACAGCGGCAACAGCTTCAGCCGTACCACTA
CCAGCAGCACCACCACAACCACGGAGCGCATCGAGATCCGTGCCGAGGGA
GACGGCGAGGTGGACACGGATTCCATTCGCAAACGCATAACCGAACGACT
GCGCAGATCGGTGTCGAAGACAATCTCAAATCTAGCTGGAACACCAGTGA
CAAACACCGAAGAGGGCAGTCGTTATAGTAGGAGTGTGTCCCGATCCGTC
TACGACGATGAGAAGTCCTCCAAGCGTAGTTACTCTACGGGTGAAGAGGA
TATTGATGAGGAGGATGAATTGGAGGAGGATCAGTTCCGTAGTTTCAATG
TAACCCGTAAATCGGCCACACCGGCGGAAATATCCTGCCGTCAGTTGAAG
GCTCCTAGAGAATTTGGCGGTTGGCTAGGCGCCTTCCTGTTCCTGCTACT
TCTGCCCACCGCCGTCTACTATTTGACATGGAGCTGTACGGCCAGAAACG
CCTGTCAGTTTAAGCACCTCAATCTGGGTATACTACTGGATGTTAACTAC
CTAACGCGCCAGGTGTTCCAGCCACGAGTGGTGGGTGCCTTTGCCGCCTA
TCAGGTGGTGGTATTTCTGCTGGTGGCACTGCTACCAGGACGAAGGGTTC
ATCTCACCCGCGAGACCTACAAGTTTAATTGTCTAGCAGTTTCGCTTACG
CTTTTGATTGCCAGTGGAGTGGCCGAGTATCTGAAGTATCCAGTGGTCAC
CTTCGTTCTGCGTCACTATCTGCGTTTCTGCATCTTTGGACTCGTTGGCG
CCTTTGTGGCAGCTGCTTGGAGCTACTGGCTGGTGGACACCGCCAAGTAC
AATGTGCTGCGCCAAACGCTGACCAATGATTATGGCAGGACTGGCAGCTT
TGTGGTGGACTTCGCGCTGGGCAGACAGCTCAATCCCAAGTGGCTAGGAC
GCGTGGATTGGAAACAGTTTCAGTACCGTCTCTCCCTGGTGACCACCTTG
ATCTATGCCACCTGCTACATCTACCAGACGCTCGTGTGGCCCCAGAAGCC
GCAGCTGGGTGAACAGGAGGGCTATCTCTACCAGGCCAAATACTACTGGA
ACAATGTAAATTATGATCCTGCCACCCTGTTCTCGGCCAGCTGCTTGCTG
TTCTACGTATTGGACGCCATTATTTTCGAGCACCACTTGAGCTCATCCTT
TGAGCTGCAACACGAAGGCTACGGCTGTTTGCTGCTCCTGCGCTACGCAG
CCACTCCATATCTGCTGACGGCGGTCACCAAGTATTTCTACGAGCAGCGT
GTACCCATCTCCTGCTGGTATGCTCCGCTGGCAGTGGCTGCTCTGCTGTC
TCTGGGATTGCTGGTCAAGCGATTCAGTTGCGCCTACAAGTACAAATACC
GATTGAACTCGCAAAGTCCGATCTTCGCCAACATCGAAACTATTCACACG
TATCAGGGAAGCCGTCTGCTGCTCAGCGGAATGTGGGGATGGGTACGCCA
GCCCAACTATCTAGGCGACATCGTGGCCCTGCTGGCCCTGGCTGCTCCCA
TGGCCCTGCGTCCGGCCTGGCCACCAGTTCTGGGTCTTAGTCTGATCATC
CTGCTCCTGCTCCATCGCGCCACCCGAGCGAACGCCCGGAATCAGGCGCG
CTATCACTCCTCCTGGCAGCGCTACAGCACCCAGGTGCGCAGCTACATCC
TGCCCAGGGTCTACTAAAAGCTTTCTAGACCAT

BS11021.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
LBR-RC 2226 CG17952-PC 75..2226 16..2167 10760 100 Plus
LBR-RA 2151 CG17952-PA 1..2151 17..2167 10755 100 Plus
LBR-RB 2151 CG17952-PB 1..2151 17..2167 10755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
LBR-RC 2792 CG17952-RC 243..2394 16..2167 10760 100 Plus
LBR-RA 2701 CG17952-RA 152..2303 16..2167 10760 100 Plus
LBR-RB 2719 CG17952-RB 170..2321 16..2167 10760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21721856..21723657 366..2167 9010 100 Plus
2R 25286936 2R 21720976..21721329 16..369 1770 100 Plus
Blast to na_te.dros performed 2014-11-28 02:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7368..7423 470..524 124 71.4 Plus

BS11021.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:23 Download gff for BS11021.complete
Subject Subject Range Query Range Percent Splice Strand
LBR-RC 221..2369 17..2165 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:39 Download gff for BS11021.complete
Subject Subject Range Query Range Percent Splice Strand
LBR-RB 171..2319 17..2165 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:34 Download gff for BS11021.complete
Subject Subject Range Query Range Percent Splice Strand
LBR-RC 221..2369 17..2165 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:16 Download gff for BS11021.complete
Subject Subject Range Query Range Percent Splice Strand
LBR-RB 171..2319 17..2165 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:16 Download gff for BS11021.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21720977..21721327 17..367 100 -> Plus
2R 21721858..21723655 368..2165 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:39 Download gff for BS11021.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17608482..17608832 17..367 100 -> Plus
arm_2R 17609363..17611160 368..2165 100   Plus

BS11021.3prime Sequence

873 bp (825 high quality bases) assembled on 2006-04-19

> BS11021.3prime
ATGGTCTAGAAAGCTTTTAGTAGACCCTGGGCAGGATGTAGCTGCGCACC
TGGGTGCTGTAGCGCTGCCAGGAGGAGTGATAGCGCGCCTGATTCCGGGC
GTTCGCTCGGGTGGCGCGATGGAGCAGGAGCAGGATGATCAGACTAAGAC
CCAGAACTGGTGGCCAGGCCGGACGCAGGGCCATGGGAGCAGCCAGGGCC
AGCAGGGCCACGATGTCGCCTAGATAGTTGGGCTGGCGTACCCATCCCCA
CATTCCGCTGAGCAGCAGACGGCTTCCCTGATACGTGTGAATAGTTTCGA
TGTTGGCGAAGATCGGACTTTGCGAGTTCAATCGGTATTTGTACTTGTAG
GCGCAACTGAATCGCTTGACCAGCAATCCCAGAGACAGCAGAGCAGCCAC
TGCCAGCGGAGCATACCAGCAGGAGATGGGTACACGCTGCTCGTAGAAAT
ACTTGGTGACCGCCGTCAGCAGATATGGAGTGGCTGCGTAGCGCAGGAGC
AGCAAACAGCCGTAGCCTTCGTGTTGCAGCTCAAAGGATGAGCTCAAGTG
GTGCTCGAAAATAATGGCGTCCAATACGTAGAACAGCAAGCAGCTGGCCG
AGAACAGGGTGGCAGGATCATAATTTACATTGTTCCAGTAGTATTTGGCC
TGGTAGAGATAGCCCTCCTGTTCACCCAGCTGCGGCTTCTGGGGCCACAC
GAGCGTCTGGTAGATGTAGCAGGTGGCATAGATCAAGGTGGTCACCAGGG
AGAGACGGTACTGAAACTGTTTCCAATCCACGCGTCCTAGCCACTTGGGA
TTGAGCTGTCTGCCCAGCGCGAAGTCCACCACAAAGCTGCCAGTCCTGCC
CTAATCATTGGTCAGCGTTTGGC

BS11021.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17952-PB 2151 LBR-RB 1295..2151 873..17 4260 99.8 Minus
CG17952-PA 2151 LBR-RA 1295..2151 873..17 4260 99.8 Minus
CG17952-PC 2226 LBR-RC 1370..2226 873..17 4260 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
LBR-RC 2792 CG17952-RC 1538..2394 873..17 4270 99.9 Minus
LBR-RA 2701 CG17952-RA 1447..2303 873..17 4270 99.9 Minus
LBR-RB 2719 CG17952-RB 1465..2321 873..17 4270 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21722801..21723657 873..17 4270 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 22:11:52 has no hits.

BS11021.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:23 Download gff for BS11021.3prime
Subject Subject Range Query Range Percent Splice Strand
LBR-PA 1295..2151 17..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:00 Download gff for BS11021.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17952-PC 1370..2226 17..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:55:16 Download gff for BS11021.3prime
Subject Subject Range Query Range Percent Splice Strand
LBR-RB 1465..2323 13..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:46 Download gff for BS11021.3prime
Subject Subject Range Query Range Percent Splice Strand
LBR-RB 1465..2323 13..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:46 Download gff for BS11021.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21722801..21723659 13..873 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:55:16 Download gff for BS11021.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17610306..17611164 13..873 99   Minus

BS11021.5prime Sequence

856 bp (818 high quality bases) assembled on 2006-04-19

> BS11021.5prime
GAAGTTATCAGTCGACATGGATCGACGCCTGAGACGCCCGCGTCGCACGG
AAGACGTGTCCAGCGGTCCACTTCTGGCCCAGTCCAAGCAGCCCAGCCTC
CTGCCGGTGACCCGACGTACGGGCTCCGTGACAGCTGCGGGTGCCACCGC
CACCGCCACCGCCACCGCTGGTCCCGCCACCCGGACACGTGCCTCCCCGT
CACGCAACAAGGTCGTCGCACCGCCCTCGCCCGATCTTGGCCCGCGCACC
CGTCGCTCCAGCCGGCCGAGGTCGTCGGTGGGTCCGCTGACCGGATCGGG
ATCTGGTTCCTCGCTGCCCATCAAGGCCGCCATCAAGGCACGCACACCCA
TCCCAGAGGTTTCCGAGGTATCATCGCCTATTCGTTTGTCAACCAGCAAT
CTGCCCATGACATTGACCACCAACACATCCAGCGGCGCACCGAACAAAGC
ATTTAACACAAGCTCCGTGAACAGCGGCAACAGCTTCAGCCGTACCACTA
CCAGCAGCACCACCACAACCACGGAGCGCATCGAGATCCGTGCCGAGGGA
GACGGCGAGGTGGACACGGATTCCATTCGCAAACGCATAACCGAACGACT
GCGCAGATCGGTGTCGAAGACAATCTCAAATCTAGCTGGAACACCAGTGA
CAAACACCGAAGAGGGCAGTCGTTATAGTAGGAGTGTGTCCCGATCCGTC
TACGACGATGAGAAGTCCTCCAAGCGTAGTTACTCTACGGGTGAAGAGGA
TATTGATGAGGAGGATGAATTGGAGGAGGATCAGTTCCGTAGTTTCAATG
TAACCCGTAAATCGGCCACACCGGCGGAAATATCCTGCCGTCAGTTGAAG
GCTCCT

BS11021.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17952-PC 2226 LBR-RC 75..915 16..856 4205 100 Plus
CG17952-PB 2151 LBR-RB 1..840 17..856 4200 100 Plus
CG17952-PA 2151 LBR-RA 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
LBR-RC 2792 CG17952-RC 243..1083 16..856 4205 100 Plus
LBR-RA 2701 CG17952-RA 152..992 16..856 4205 100 Plus
LBR-RB 2719 CG17952-RB 170..1010 16..856 4205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21721856..21722346 366..856 2455 100 Plus
2R 25286936 2R 21720976..21721329 16..369 1770 100 Plus
Blast to na_te.dros performed 2015-02-11 10:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7368..7423 470..524 124 71.4 Plus

BS11021.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:24 Download gff for BS11021.5prime
Subject Subject Range Query Range Percent Splice Strand
LBR-PC 67..915 8..856 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:01 Download gff for BS11021.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17952-PC 67..915 8..856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:05:37 Download gff for BS11021.5prime
Subject Subject Range Query Range Percent Splice Strand
LBR-RB 162..1010 8..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:33 Download gff for BS11021.5prime
Subject Subject Range Query Range Percent Splice Strand
LBR-RB 162..1010 8..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:33 Download gff for BS11021.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21720968..21721327 8..367 98 -> Plus
2R 21721858..21722346 368..856 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:05:37 Download gff for BS11021.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17608473..17608832 8..367 98 -> Plus
arm_2R 17609363..17609851 368..856 100   Plus

BS11021.pep Sequence

Translation from 16 to 2166

> BS11021.pep
MDRRLRRPRRTEDVSSGPLLAQSKQPSLLPVTRRTGSVTAAGATATATAT
AGPATRTRASPSRNKVVAPPSPDLGPRTRRSSRPRSSVGPLTGSGSGSSL
PIKAAIKARTPIPEVSEVSSPIRLSTSNLPMTLTTNTSSGAPNKAFNTSS
VNSGNSFSRTTTSSTTTTTERIEIRAEGDGEVDTDSIRKRITERLRRSVS
KTISNLAGTPVTNTEEGSRYSRSVSRSVYDDEKSSKRSYSTGEEDIDEED
ELEEDQFRSFNVTRKSATPAEISCRQLKAPREFGGWLGAFLFLLLLPTAV
YYLTWSCTARNACQFKHLNLGILLDVNYLTRQVFQPRVVGAFAAYQVVVF
LLVALLPGRRVHLTRETYKFNCLAVSLTLLIASGVAEYLKYPVVTFVLRH
YLRFCIFGLVGAFVAAAWSYWLVDTAKYNVLRQTLTNDYGRTGSFVVDFA
LGRQLNPKWLGRVDWKQFQYRLSLVTTLIYATCYIYQTLVWPQKPQLGEQ
EGYLYQAKYYWNNVNYDPATLFSASCLLFYVLDAIIFEHHLSSSFELQHE
GYGCLLLLRYAATPYLLTAVTKYFYEQRVPISCWYAPLAVAALLSLGLLV
KRFSCAYKYKYRLNSQSPIFANIETIHTYQGSRLLLSGMWGWVRQPNYLG
DIVALLALAAPMALRPAWPPVLGLSLIILLLLHRATRANARNQARYHSSW
QRYSTQVRSYILPRVY*

BS11021.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
LBR-PC 741 CG17952-PC 26..741 1..716 3697 100 Plus
LBR-PA 716 CG17952-PA 1..716 1..716 3697 100 Plus
LBR-PB 716 CG17952-PB 1..716 1..716 3697 100 Plus