BS11024.complete Sequence
4217 bp assembled on 2010-07-15
GenBank Submission: KX803709
> BS11024.complete
GAAGTTATCAGTCGACATGAGGAAGCCAGAAATGCTGATTAGTTTAATTT
TATGGTGCCTTTGCGCTTCCAGTCTGACACTCCGTATCCCCGAGGACCTT
GAGAATGCCGCCATCAATGCCCTGAGCTCCGAACGTGCCCGTTCCCTGAC
CCCTTGTGGATCCTCCGCGGAGGCAGAGGGCAGTGTGGCCGGTGACTATG
ACGTTTGCCCGCCGAGCAAGTACCGCCAGCCAACAGCTGAGTGCAACAAC
GTCTCCCACCGAAAGTGGGGTGCCCGGGGAGATATCTTCCAGCGTCTGCT
GGCTGCTGATTATGCCGATGGTGTGAGCCAGCCGAGGACCTCCAAGGGAA
CCCATGCTCTACCCGATGCCGAGGTGGTGATCGAGCAACTGCAGCGCCAT
GTGGAAGGCGAGCTGCGCCACGCGCACATCACTGCCATGCTGCCCGCCTG
GGGTCAACTGTTGGCCAATGACCTAGTCGAGGTAGGACAGCTTCCCATCT
CCGGAAAGTGCTGCGAGCGCGACTCCGCCGTCAAGGATCCCAGCGAGCTG
CAGCACTGCTTCGTACGGGCGGGACCCGACTGCAAGGAGTACAAGCGATC
GGCACCAGGATTCGATTTGGAGGCGTGTCAGAAGCACACTCGCCAGCAGA
TGAACATTGCCTCGGCCTACATTGATGGCTCTGGACTGTATGGCTCCACG
CGCCATGAATTCGACCAGTTGCGCACCTACATCAGCGGTGGTGTAAAGGT
GGAGTCCTGCAAGTACTGTCAGGTGGCTGGAGCCACTGGAGCACTGCATC
GAGCTCTGCTTCAGCAGCACAACAACATCGGCGAGCGGCTGTCGCACATC
AATCCCGATTGGTCCGAAGAGGACGTATTCCTGGAGGCCAGACGCATCAT
CACGGCCACCATTCAGCACATCACCTACAACGAGTTCTTGCCTTTGGTCT
TGGGACAGGAAACCACTGCCAAGGAGGGTCTGAGACTGACTGCCGAGAAG
CACTCGAGCAACTACTCCAGCTCGGTGAGGGGGGGAATCTACAATGAGTT
CGCAACCGCCGCCATGCCCGCTTTCTGGAGCATGTATCCACCAGAGATGC
TGGCCAAGAAGATGTCCGCCCACGAGCTGCTGTCTATTGCCGCCCTGCAG
AAGTCACTGGTTCCGAGTCAAACGAATGCCGAGGGTTGGTCCGAGTTGGC
TCTGGCCGTACATCGCGGTCGTGACCACGGAGTGGCATCCTATGTGCATG
CCCTTGATCTCTGCGAGCGTCGATTCGCCGACCAAAGCGCTGCCAATGTG
AGCTTCGATACTTTAGCCCAGGTTTCCAATATTCCCGAGGAGTACATCAC
CAATCTGCGTGACATTTACCAAAACGCTAACGATATTGACTTGTTGGTGG
GTGCTCTTCTGGAAGAGCCTGTTGTTGGAGCTCTCTTTGGACCCACAATT
AGTTGCTTGCTGAGCTTGCAATTTGAGCAGCTCAAACAGACCGATCGTTT
CTGGTACGAGAATGAGATTCCGCCCTCGTCCTTTACTCTGGATCAGCTGA
AAAGCATTCGCCAGACGACTCTGTCCGGATTGCTGTGTGGTTCTCATCAA
GTGAGCACCGCCCAATCCAAGGCTTTTATTCTGGAGGACAATTATCTGAA
TTCCATTTTGGACTGCGACCAGCTGCCCAAGTTTGATCTAAAACCCTGGC
AAGTAAACCCTGAAGATGAAGTGCATGTTGAGCACGTTGAGGTCGAACCC
GCGACTAAAGAAGCCATTGCCGAACTGAGTCCCGAACTCATTGAGGCTGC
TGTGGAGCGTGCCAAGCAAGAATTGGAGGAACGCAAGCGTTTCGAGTACG
AAGTGTGGCGTACAAAGGGTGGCATCAGCGCCCGATCTCCTGACGGCACG
GCTGCCTCCTTCAGCAAGGCCAATTTGGCTGCCCTGAACTTGGCCAACTC
GTCCCTGATCTTCGAGCTGACCTCCAACGAGATTGTGAAGACCCTCAACC
ACATAACCAGACGCAAGCGTCAGATCTTCAATCCTAACCAGAATGCATTT
AATCGCAACGAACTGACCGATACCCTGCAAACGGTGGACATAAGTGGACT
ACTTGGTGGTGCCCAGAAGCAACTTGACACATGCCCGGAACCCAGTCAAC
AGTGCGATGCGAACTCGCCGTTCCGCACTCTCTCCGGAAGGTGCAACAAT
CTGCGTAATCCTAACTGGGGCAAGTCACTGACCACTTTCTCCCGCCTGCT
GCCCGCTCAGTATGAAGACGGCATCTCGGCACCCAGATTGACTGGAGTAA
CTGGCACCGCATTGCCCAATCCCAGAACCATTTCCACTACAATCCATCCT
GATATTTCCAACCTGCACACTCGCTATTCCCTGATGGTGATGCAGTTCGC
ACAGTTTGTCGACCACGATTTGACTTTGACCCCGATCCACAAGGGTTTCC
ACGAGTCCATCCCAAGTTGCCGACCTTGCAACTCCCGCCAGACGGTGCAT
CCCGAATGTAATCCCTTCCCAGTGCCCGCTGGCGATTTCTATTATCCCGA
AGTGAATGTGACCAGTGGCGAGCGTTTCTGCTTCCCCTCGATGAGATCGT
TGCCTGGTCAGCAATCGCTGGGACCCCGTGATCAGATCAATCAGAACACT
CACTTCCTGGACGGTTCCATGGTGTATGGCGAGACCACTTGTCTATCAAA
CAAGCTTCGTGGATTCTCAGGACGCATGAACAGCACCCAAGTGAGGGGCA
AGGAACTTTTGCCTCTGGGACCCCATCCCGAGTGCAAGTCCCGCAACGGT
CTGTGCTTCCTTGGAGGCGATGATCGTGCTTCCGAGCAGCCAGGTCTGAC
TGCCATTCACACCGCCTTTCTGCGTGAACACAACCGCATCGTTGAGGGTC
TGCGCGGAGTGAATCCTCACTGGAATGGAGAACAGCTCTTCCATCATGCC
CGTAAAATTGTCAGTGCCCAAGTGCAGCATATCGTGTTCAACGAGTTCCT
GCCCCGCATTCTCAGCTGGAATGCCGTCAATCTGTATGGTCTTAAGCTCC
TGCCCCAGGGGTACTACAAGGACTACAACCCATCGTGCTCTCCGATTGTT
TTCAACGAGTTTGCGGCAGCTGCCTTCCGTATCGGTCACTCTCTGCTACG
TCCCCATATTCCTCGTCTAAGTGTCCAGCACCAGCCTGTGGAGCCGCCAC
TATTGCTACGTGATGGTTTCTTCCGCATGGATGCCCTGCTGCAGCCTGGA
ATAATTGACGAAATTCTGCGTGGTCTGGTGGCCACTCCAATGGAGACCCT
GGATCAGTTCATTACCGGCGAAGTGACAAACCATTTGTTCGAGGATCGCA
AGATTCCCTTCTCTGGCATTGATTTGATCGCCCTGAATATTCAGAGAGCT
CGTGATCATGGAATACCCTCGTACAACAACTACCGAGCCCTTTGCAATCT
GAAACGCGCCACCAACTGGAACGACTTGAGCCGCGAGATTCCCACCGAGG
TCATCAACCGGTTCCAGAAGATCTACGCCAGCGTGGATGACATTGATCTG
TTCCCTGGTGCCATGACTGAACGTCCGCTGCAAGGCGGTCTGGTTGGACC
CACTTTGGCCTGCATCATTGGCATCCAGTTCAGGCAGCTGCGCAAATGCG
ATCGCTTCTGGTACGAGAATCAGAACCCAGAGGTCAAGTTCACGGAGGCT
CAGCTGGCTGAGGTCCGTAAGGTGACGCTGGCCAAGATCGTGTGCGAGAA
CTTGGAGATCACAGGAGATATGCAGCGTGCTGCCTTTGATTTGCCTAGCA
ATTTCCTTAACCCACGTGTGCCCTGCGCCTCGATGCCCCAGATTGACCTG
AATGCCTGGCGCGAAAATGTCCAGGGTTGTCAGATTGGCAACCGCAATGT
CCGAGTTGGAGAATCTGCCTTCCCATCACCCTGCACCAGTTGTGTCTGCT
CCGCCGAAGGAGCTCAGTGTGCGTCTCTGCGCATCACGGATTGCGGCCAG
TTGATCAGGCAGTGGCCCAAAGAGGCTATTCTCCGTGACGAGGTGTGCAA
CTCGCAGTGCGGCATTTATTTGACTGGTCAGCAGGCCAGTGGCTTCAATC
CCCAACAGCGACAGGGTCAGGCTCAGCCACGTGTGACCCGATCCCGCAAT
CAGAATCTCTTCAAGTTCCCCGACCTTACGCCCTTCATTGCTTCCCTGTA
AAAGCTTTCTAGACCAT
BS11024.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10211-RB | 4185 | CG10211-PB | 1..4185 | 17..4201 | 20925 | 100 | Plus |
| CG10211-RA | 4185 | CG10211-PA | 1..4185 | 17..4201 | 20925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10211-RB | 5187 | CG10211-RB | 694..4879 | 16..4201 | 20930 | 100 | Plus |
| CG10211-RA | 5000 | CG10211-RA | 694..4879 | 16..4201 | 20930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18529122..18530658 | 1862..3398 | 7670 | 99.9 | Plus |
| 2L | 23513712 | 2L | 18527514..18528249 | 636..1371 | 3680 | 100 | Plus |
| 2L | 23513712 | 2L | 18526865..18527446 | 54..635 | 2910 | 100 | Plus |
| 2L | 23513712 | 2L | 18530726..18531136 | 3397..3807 | 2055 | 100 | Plus |
| 2L | 23513712 | 2L | 18528506..18528782 | 1372..1648 | 1385 | 100 | Plus |
| 2L | 23513712 | 2L | 18531420..18531659 | 3962..4201 | 1200 | 100 | Plus |
| 2L | 23513712 | 2L | 18528841..18529058 | 1648..1865 | 1090 | 100 | Plus |
| 2L | 23513712 | 2L | 18531205..18531359 | 3808..3962 | 775 | 100 | Plus |
| 2L | 23513712 | 2L | 18518180..18518221 | 16..57 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:31:21 has no hits.
BS11024.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 13:47:06 Download gff for
BS11024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10211-RA | 689..4871 | 17..4199 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:46 Download gff for
BS11024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10211-RA | 695..4877 | 17..4199 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:51:31 Download gff for
BS11024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10211-RA | 695..4877 | 17..4199 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:51:31 Download gff for
BS11024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18528506..18528781 | 1372..1647 | 100 | -> | Plus |
| 2L | 18528841..18529058 | 1648..1865 | 100 | -> | Plus |
| 2L | 18518181..18518218 | 17..54 | 100 | -> | Plus |
| 2L | 18526866..18527446 | 55..635 | 100 | -> | Plus |
| 2L | 18527514..18528249 | 636..1371 | 100 | -> | Plus |
| 2L | 18529126..18530658 | 1866..3398 | 100 | -> | Plus |
| 2L | 18530728..18531136 | 3399..3807 | 100 | -> | Plus |
| 2L | 18531205..18531358 | 3808..3961 | 100 | -> | Plus |
| 2L | 18531420..18531657 | 3962..4199 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:46 Download gff for
BS11024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18518181..18518218 | 17..54 | 100 | -> | Plus |
| arm_2L | 18526866..18527446 | 55..635 | 100 | -> | Plus |
| arm_2L | 18527514..18528249 | 636..1371 | 100 | -> | Plus |
| arm_2L | 18528506..18528781 | 1372..1647 | 100 | -> | Plus |
| arm_2L | 18528841..18529058 | 1648..1865 | 100 | -> | Plus |
| arm_2L | 18529126..18530658 | 1866..3398 | 100 | -> | Plus |
| arm_2L | 18530728..18531136 | 3399..3807 | 100 | -> | Plus |
| arm_2L | 18531205..18531358 | 3808..3961 | 100 | -> | Plus |
| arm_2L | 18531420..18531657 | 3962..4199 | 100 | | Plus |
BS11024.pep Sequence
Translation from 16 to 4200
> BS11024.pep
MRKPEMLISLILWCLCASSLTLRIPEDLENAAINALSSERARSLTPCGSS
AEAEGSVAGDYDVCPPSKYRQPTAECNNVSHRKWGARGDIFQRLLAADYA
DGVSQPRTSKGTHALPDAEVVIEQLQRHVEGELRHAHITAMLPAWGQLLA
NDLVEVGQLPISGKCCERDSAVKDPSELQHCFVRAGPDCKEYKRSAPGFD
LEACQKHTRQQMNIASAYIDGSGLYGSTRHEFDQLRTYISGGVKVESCKY
CQVAGATGALHRALLQQHNNIGERLSHINPDWSEEDVFLEARRIITATIQ
HITYNEFLPLVLGQETTAKEGLRLTAEKHSSNYSSSVRGGIYNEFATAAM
PAFWSMYPPEMLAKKMSAHELLSIAALQKSLVPSQTNAEGWSELALAVHR
GRDHGVASYVHALDLCERRFADQSAANVSFDTLAQVSNIPEEYITNLRDI
YQNANDIDLLVGALLEEPVVGALFGPTISCLLSLQFEQLKQTDRFWYENE
IPPSSFTLDQLKSIRQTTLSGLLCGSHQVSTAQSKAFILEDNYLNSILDC
DQLPKFDLKPWQVNPEDEVHVEHVEVEPATKEAIAELSPELIEAAVERAK
QELEERKRFEYEVWRTKGGISARSPDGTAASFSKANLAALNLANSSLIFE
LTSNEIVKTLNHITRRKRQIFNPNQNAFNRNELTDTLQTVDISGLLGGAQ
KQLDTCPEPSQQCDANSPFRTLSGRCNNLRNPNWGKSLTTFSRLLPAQYE
DGISAPRLTGVTGTALPNPRTISTTIHPDISNLHTRYSLMVMQFAQFVDH
DLTLTPIHKGFHESIPSCRPCNSRQTVHPECNPFPVPAGDFYYPEVNVTS
GERFCFPSMRSLPGQQSLGPRDQINQNTHFLDGSMVYGETTCLSNKLRGF
SGRMNSTQVRGKELLPLGPHPECKSRNGLCFLGGDDRASEQPGLTAIHTA
FLREHNRIVEGLRGVNPHWNGEQLFHHARKIVSAQVQHIVFNEFLPRILS
WNAVNLYGLKLLPQGYYKDYNPSCSPIVFNEFAAAAFRIGHSLLRPHIPR
LSVQHQPVEPPLLLRDGFFRMDALLQPGIIDEILRGLVATPMETLDQFIT
GEVTNHLFEDRKIPFSGIDLIALNIQRARDHGIPSYNNYRALCNLKRATN
WNDLSREIPTEVINRFQKIYASVDDIDLFPGAMTERPLQGGLVGPTLACI
IGIQFRQLRKCDRFWYENQNPEVKFTEAQLAEVRKVTLAKIVCENLEITG
DMQRAAFDLPSNFLNPRVPCASMPQIDLNAWRENVQGCQIGNRNVRVGES
AFPSPCTSCVCSAEGAQCASLRITDCGQLIRQWPKEAILRDEVCNSQCGI
YLTGQQASGFNPQQRQGQAQPRVTRSRNQNLFKFPDLTPFIASL*
BS11024.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10211-PB | 1394 | CG10211-PB | 1..1394 | 1..1394 | 7362 | 100 | Plus |
| CG10211-PA | 1394 | CG10211-PA | 1..1394 | 1..1394 | 7362 | 100 | Plus |
| CG5873-PA | 753 | CG5873-PA | 155..727 | 719..1283 | 1002 | 38.8 | Plus |
| CG42331-PD | 1615 | CG42331-PD | 15..735 | 569..1283 | 991 | 35.7 | Plus |
| CG42331-PB | 1615 | CG13632-PA | 15..735 | 569..1283 | 991 | 35.7 | Plus |
| CG5873-PA | 753 | CG5873-PA | 150..725 | 64..561 | 560 | 29.3 | Plus |
| CG42331-PD | 1615 | CG42331-PD | 167..744 | 63..574 | 552 | 31 | Plus |
