Clone Sequence Records
BS11028.3prime Sequence
892 bp (810 high quality bases) assembled on 2006-04-19
> BS11028.3prime
ATGGTCTAGAAAGCTTCTACAAGTAGGGATAGCCCATGTTGCGTCCTCCT
GCCGCCGTTACCGTTGCTGCACCAGGTGGATAATTCTGTGCATATTGTGG
AGGAATGCCCATTGCTGGGCCAGCGGTGATCATCAGTTGTGGCTCCATCT
GAATAATGTTTTTGTGCTCAGTGGAATCGTCCTCCTTCTCGCGCTGAGCC
TCGTTCAACTCCAGTTTGTCCACCTTTGTTGTGTATTCGCGCAGAACCTG
AATCAAATAGGGCATGGCAAAGTCAACGATTTTGTGTTTCCAGGCCAACT
CCAAGATAACATCAGGGCGCAGCAAGTCGTAACACTGATAAAGACAAGCT
GCAAAACAATCGTAAGCGTCACGTTCTAGGAACCAACCCAACAACTCTTC
GGCAATATCTTGCTTGCAAGATTCGGCGGCGTACTCCATAGCATCCTTGT
AGAGTTTATCCTTTTTGCAGAGCTCAACGCTCTGTTTCCAGCGATTATTT
CCCTTGTACAAGTAGGCGGCAATCCTACGGAATTCGGTAAGTTCGTGCTT
TTCGAGTTTCTGTGCCAACGCAATGTTGTCAAAGTTATCAAATCCATCGA
TCGAATTGCGCAGACCCTGGTAGTCCTCCTCGTCGATTAAGAGTCCGTTC
AGGGCTTCGTTGATTGCCTTGTTATTGAGAGATTGGACTGAACGCAGATA
AGGCTTGACGAGTGGCAAATAGCCGGTTTTGGAGAAGTAACTAACAGCAC
GAGTGTGATCCATCCTGGGTGCCAGCACGAGCAGCATGTCGTTCAACAGC
AGCGGCTTGAAGTCAAATAGAATTCGATAGCCTTGTAGTACAGCTCAATG
TTGGCTACCTTGGTGATAATGTCCTTAAAGTGCCCCTCGCGC
BS11028.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9012-PA | 5037 | Chc-RA | 4240..5037 | 814..17 | 3990 | 100 | Minus |
| CG9012-PB | 5037 | Chc-RB | 4240..5037 | 814..17 | 3990 | 100 | Minus |
| CG9012-PC | 5037 | Chc-RC | 4240..5037 | 814..17 | 3990 | 100 | Minus |
| CG9012-PD | 5037 | Chc-RD | 4240..5037 | 814..17 | 3990 | 100 | Minus |
| CG9012-PA | 5037 | Chc-RA | 4161..4239 | 892..814 | 395 | 100 | Minus |
| CG9012-PB | 5037 | Chc-RB | 4161..4239 | 892..814 | 395 | 100 | Minus |
| CG9012-PC | 5037 | Chc-RC | 4161..4239 | 892..814 | 395 | 100 | Minus |
| CG9012-PD | 5037 | Chc-RD | 4161..4239 | 892..814 | 395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chc-RG | 5788 | CG9012-RG | 4626..5502 | 892..17 | 4360 | 99.9 | Minus |
| Chc-RF | 5577 | CG9012-RF | 4415..5291 | 892..17 | 4360 | 99.9 | Minus |
| Chc-RE | 5683 | CG9012-RE | 4521..5397 | 892..17 | 4360 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15828951..15829343 | 501..892 | 1915 | 99.7 | Plus |
| X | 23542271 | X | 15828272..15828507 | 17..252 | 1180 | 100 | Plus |
| X | 23542271 | X | 15828716..15828883 | 335..502 | 840 | 100 | Plus |
| X | 23542271 | X | 15828561..15828652 | 246..337 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:50:32 has no hits.
BS11028.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:31 Download gff for
BS11028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-PC | 4161..5037 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:12 Download gff for
BS11028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9012-PC | 4161..5037 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:52:58 Download gff for
BS11028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-RE | 4521..5402 | 11..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:57 Download gff for
BS11028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-RE | 4521..5402 | 11..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:57 Download gff for
BS11028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15828267..15828502 | 11..247 | 99 | <- | Plus |
| X | 15828563..15828649 | 248..334 | 100 | <- | Plus |
| X | 15828716..15828882 | 335..501 | 100 | <- | Plus |
| X | 15828952..15829343 | 502..892 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:52:58 Download gff for
BS11028.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15722300..15722535 | 11..247 | 99 | <- | Plus |
| arm_X | 15722596..15722682 | 248..334 | 100 | <- | Plus |
| arm_X | 15722749..15722915 | 335..501 | 100 | <- | Plus |
| arm_X | 15722985..15723376 | 502..892 | 99 | | Plus |
BS11028.5prime Sequence
916 bp (816 high quality bases) assembled on 2006-04-19
> BS11028.5prime
GAAGTTATCAGTCGACATGACGCAACCACTGCCCATCCGCTTTCAGGAGC
ATTTACAGCTCACAAATGTCGGGATCAACGCCAATTCATTTTCATTCAGC
ACGCTCACGATGGAATCGGATAAGTTTATTTGCGTGCGGGAGAAGGTGAA
TGATACCGCCCAAGTGGTCATCATTGACATGAACGATGCCACCAATCCCA
CGCGGCGTCCCATCTCAGCGGATTCGGCTATCATGAATCCAGCTAGCAAG
GTCATTGCGCTCAAAGCGCAAAAGACGTTGCAGATCTTCAACATTGAGAT
GAAGTCGAAGATGAAGGCGCATACCATGAACGAGGATGTGGTGTTCTGGA
AGTGGATCTCCCTCAATACGCTAGCTCTGGTCACAGAAACGAGTGTGTTC
CATTGGTCCATGGAGGGCGATTCGATGCCGCAAAAGATGTTTGACCGGCA
TTCATCGCTGAACGGTTGTCAAATCATCAACTACCGCTGCAATGCCTCCC
AGCAGTGGCTACTCTTGGTCGGCATTTCGGCACTGCCAAGTCGCGTTGCC
GGTGCCATGCAGTTGTATTCGGTGGAGCGTAAGGTGTCCCAGGCGATCGA
GGGGCATGCGGCCAGTTTTGCCACGTTTAAAATCGATGCCAACAAGGAGC
CGACCACGCTGTTCTGCTTTGCAGTTCGTACGGCCACTGGGGGCAAGCTT
CATATTATCGAAGTTGGTGCTCCGCCGAACGGCAATCAGCCGTTTGCCAA
GAAGGCTGTCGATGTCTTCTTTCCGCCGGAAGCACAAAATGATTTCCCTG
TGGCTATGCAAGTCTCTGCCAAGTACGACACCATCTACTTGATAACCAAG
TATGGATACATACATCTGTATGACATGGAGACGGCCACGTGCATATACAT
GAATCGTATATCGGCC
BS11028.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9012-PA | 5037 | Chc-RA | 1..900 | 17..916 | 4500 | 100 | Plus |
| CG9012-PB | 5037 | Chc-RB | 1..900 | 17..916 | 4500 | 100 | Plus |
| CG9012-PC | 5037 | Chc-RC | 1..900 | 17..916 | 4500 | 100 | Plus |
| CG9012-PD | 5037 | Chc-RD | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chc-RG | 5788 | CG9012-RG | 466..1365 | 17..916 | 4500 | 100 | Plus |
| Chc-RF | 5577 | CG9012-RF | 255..1154 | 17..916 | 4500 | 100 | Plus |
| Chc-RE | 5683 | CG9012-RE | 361..1260 | 17..916 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15832604..15833255 | 916..265 | 3260 | 100 | Minus |
| X | 23542271 | X | 15833492..15833703 | 266..55 | 1060 | 100 | Minus |
| X | 23542271 | X | 15834123..15834164 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:07:21 has no hits.
BS11028.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:32 Download gff for
BS11028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-PB | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:13 Download gff for
BS11028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9012-PD | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:50:49 Download gff for
BS11028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-RE | 354..1260 | 10..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:55:59 Download gff for
BS11028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-RE | 354..1260 | 10..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:55:59 Download gff for
BS11028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15834123..15834171 | 10..58 | 93 | | Minus |
| X | 15833492..15833699 | 59..266 | 100 | <- | Minus |
| X | 15832604..15833253 | 267..916 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:50:49 Download gff for
BS11028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15726637..15727286 | 267..916 | 100 | <- | Minus |
| arm_X | 15727525..15727732 | 59..266 | 100 | <- | Minus |
| arm_X | 15728156..15728204 | 10..58 | 93 | | Minus |
BS11028.complete Sequence
5069 bp assembled on 2009-12-07
GenBank Submission: KX802159
> BS11028.complete
GAAGTTATCAGTCGACATGACGCAACCACTGCCCATCCGCTTTCAGGAGC
ATTTACAGCTCACAAATGTCGGGATCAACGCCAATTCATTTTCATTCAGC
ACGCTCACGATGGAATCGGATAAGTTTATTTGCGTGCGGGAGAAGGTGAA
TGATACCGCCCAAGTGGTCATCATTGACATGAACGATGCCACCAATCCCA
CGCGGCGTCCCATCTCAGCGGATTCGGCTATCATGAATCCAGCTAGCAAG
GTCATTGCGCTCAAAGCGCAAAAGACGTTGCAGATCTTCAACATTGAGAT
GAAGTCGAAGATGAAGGCGCATACCATGAACGAGGATGTGGTGTTCTGGA
AGTGGATCTCCCTCAATACGCTAGCTCTGGTCACAGAAACGAGTGTGTTC
CATTGGTCCATGGAGGGCGATTCGATGCCGCAAAAGATGTTTGACCGGCA
TTCATCGCTGAACGGTTGTCAAATCATCAACTACCGCTGCAATGCCTCCC
AGCAGTGGCTACTCTTGGTCGGCATTTCGGCACTGCCAAGTCGCGTTGCC
GGTGCCATGCAGTTGTATTCGGTGGAGCGTAAGGTGTCCCAGGCGATCGA
GGGGCATGCGGCCAGTTTTGCCACGTTTAAAATCGATGCCAACAAGGAGC
CGACCACGCTGTTCTGCTTTGCAGTTCGTACGGCCACTGGGGGCAAGCTT
CATATTATCGAAGTTGGTGCTCCGCCGAACGGCAATCAGCCGTTTGCCAA
GAAGGCTGTCGATGTCTTCTTTCCGCCGGAAGCACAAAATGATTTCCCTG
TGGCTATGCAAGTCTCTGCCAAGTACGACACCATCTACTTGATAACCAAG
TATGGATACATACATCTGTATGACATGGAGACGGCCACGTGCATATACAT
GAATCGTATATCGGCCGATACGATCTTTGTTACCGCACCGCATGAGGCAA
GTGGTGGCATCATTGGCGTCAATCGCAAGGGACAGGTCCTCTCCGTGACC
GTCGACGAGGAGCAGATCATTCCCTACATCAACACCGTTCTGCAGAATCC
CGATTTGGCCCTTCGCATGGCCGTGCGCAACAATTTGGCTGGTGCCGAAG
ATCTCTTTGTGCGAAAGTTCAACAAGCTCTTTACAGCCGGCCAGTATGCT
GAAGCGGCTAAAGTTGCTGCCCTGGCACCCAAGGCCATTCTGCGTACGCC
ACAGACGATCCAGCGTTTCCAACAGGTGCAGACACCAGCTGGCTCCACGA
CTCCGCCGCTGCTGCAATACTTTGGCATTCTCCTCGACCAGGGCAAGCTG
AACAAGTTCGAGTCTCTCGAGCTGTGCCGTCCCGTCTTGCTGCAGGGCAA
GAAGCAGCTGTGCGAGAAGTGGCTGAAGGAGGAGAAGTTGGAATGCAGCG
AGGAGTTGGGTGATCTGGTCAAGGCCTCCGATCTTACACTTGCCCTGTCC
ATCTATCTGCGCGCAAATGTGCCCAACAAGGTTATCCAATGCTTTGCTGA
GACTGGGCAGTTCCAGAAGATTGTACTCTACGCCAAGAAGGTCAACTATA
CGCCCGATTACGTGTTCCTGCTGCGCTCCGTGATGCGAAGCAACCCGGAG
CAAGGAGCTGGTTTCGCCTCTATGTTGGTGGCCGAGGAAGAGCCACTGGC
GGACATCAATCAGATTGTGGACATCTTCATGGAGCACTCCATGGTGCAGC
AGTGCACTGCATTCCTGCTGGACGCCCTCAAGCATAACCGTCCCGCCGAG
GGTGCCCTCCAGACGCGCCTGCTGGAAATGAATCTGATGTCTGCTCCGCA
GGTGGCCGACGCCATCCTGGGCAATGCTATGTTCACCCACTACGATCGGG
CCCACATTGCCCAGCTGTGCGAGAAGGCTGGACTGCTCCAGCGCGCCCTC
GAGCACTACACGGATCTGTATGACATTAAGCGGGCCGTTGTGCACACGCA
CATGCTGAATGCCGAATGGCTGGTCAGTTTCTTTGGCACGCTGTCGGTGG
AGGACTCGCTGGAATGTCTGAAGGCAATGCTTACGGCGAATTTGCGCCAG
AACTTGCAGATCTGTGTGCAGATTGCCACCAAGTATCACGAACAGCTGAC
CAACAAGGCACTGATTGATCTGTTCGAAGGTTTCAAGAGCTACGACGGAC
TGTTCTACTTCCTGAGCAGCATTGTCAACTTCTCACAGGATCCCGAAGTG
CACTTCAAATACATTCAGGCGGCATGCAAGACTAATCAGATTAAGGAGGT
GGAGCGAATTTGCCGTGAATCAAACTGCTACAATCCCGAACGGGTGAAGA
ACTTCTTGAAGGAGGCCAAGCTGACGGATCAGCTACCATTAATTATTGTT
TGTGATCGTTTTGATTTCGTGCACGACTTGGTGCTTTACCTGTATCGTAA
CAATCTGCAGAAGTACATTGAGATCTATGTGCAGAAAGTGAATCCATCCC
GCTTGCCAGTGGTAGTGGGTGGTCTTCTTGATGTTGATTGCAGTGAGGAT
ATAATTAAAAATCTAATTCTCGTGGTCAAGGGACAATTCTCAACCGACGA
ACTGGTCGAGGAGGTCGAGAAGCGCAACCGTCTCAAGCTTCTCCTTCCCT
GGCTGGAGTCCCGAGTTCACGAGGGCTGCGTCGAGCCAGCCACCCACAAC
GCGTTGGCCAAGATCTACATTGACTCGAACAACAATCCCGAGAGATATCT
TAAGGAGAATCAGTACTACGATAGCCGTGTGGTCGGTCGCTACTGCGAGA
AGCGGGATCCCCATTTGGCGTGTGTCGCCTACGAGCGTGGATTGTGCGAT
CGCGAGCTGATCGCCGTTTGTAACGAGAATTCTCTGTTCAAGAGCGAAGC
ACGCTACTTGGTTGGTCGCCGCGACGCCGAACTCTGGGCCGAGGTCCTTT
CGGAGAGCAATCCATACAAGCGCCAGTTGATCGATCAGGTGGTACAGACC
GCTTTGTCCGAGACCCAGGATCCCGATGACATCTCTGTAACGGTCAAAGC
ATTCATGACCGCCGATTTGCCCAATGAGCTGATCGAACTTCTCGAGAAGA
TTATTCTGGACTCGTCCGTCTTTAGCGACCATCGCAATCTGCAAAACTTG
CTCATTCTCACAGCCATCAAGGCTGATCGCACCCGAGTCATGGACTACAT
TAACCGGCTGGAGAACTACGATGCACCGGACATCGCGAACATTGCGATCA
GTAATCAGTTGTACGAAGAAGCCTTCGCCATCTTCAAGAAGTTCGATGTG
AACACATCGGCCATTCAGGTGCTCATCGATCAAGTGAACAACCTGGAGCG
GGCTAACGAGTTCGCCGAGCGGTGCAATGAGCCGGCCGTTTGGTCGCAGC
TGGCCAAGGCCCAACTGCAGCAGGGTCTGGTCAAGGAGGCTATCGACTCG
TACATCAAGGCTGATGATCCGAGCGCTTACGTCGATGTCGTCGATGTGGC
CAGCAAGGTGGAGTCTTGGGATGACCTCGTTCGCTATCTGCAAATGGCAC
GCAAGAAGGCGCGCGAATCTTACATCGAGAGCGAATTGATCTATGCCTAT
GCGCGCACTGGACGTCTGGCCGATCTGGAGGAGTTCATTTCGGGTCCCAA
CCATGCCGATATCCAGAAGATTGGCAACCGTTGCTTCAGCGACGGCATGT
ACGATGCAGCGAAGCTACTGTACAACAATGTGAGCAACTTTGCCCGTCTG
GCCATCACTTTGGTCTACCTGAAGGAGTTCCAAGGGGCCGTGGACTCGGC
GCGGAAAGCCAACTCAACGCGCACATGGAAGGAGGTGTGCTTCGCCTGCG
TGGACGCCGAGGAGTTTAGGCTAGCTCAGATGTGCGGCCTGCACATTGTG
GTGCATGCCGATGAGCTAGAGGATCTGATTAACTACTATCAAAACCGTGG
ATACTTCGATGAATTGATTGCGCTACTCGAGTCGGCTTTGGGGCTGGAAC
GTGCGCACATGGGAATGTTCACCGAATTAGCTATACTTTATTCAAAATTC
AAACCTTCCAAAATGCGCGAACACTTGGAGCTGTTCTGGTCTCGCGTTAA
CATTCCAAAAGTTCTGCGTGCCGCTGAATCGGCTCACTTGTGGTCGGAGC
TGGTGTTCCTGTACGATAAGTACGAGGAGTACGATAACGCCGTCCTGGCC
ATGATGGCTCATCCCACGGAGGCGTGGCGCGAGGGGCACTTTAAGGACAT
TATCACCAAGGTAGCCAACATTGAGCTGTACTACAAGGCTATCGAATTCT
ATTTGGACTTCAAGCCGCTGCTGTTGAACGACATGCTGCTCGTGCTGGCA
CCCAGGATGGATCACACTCGTGCTGTTAGTTACTTCTCCAAAACCGGCTA
TTTGCCACTCGTCAAGCCTTATCTGCGTTCAGTCCAATCTCTCAATAACA
AGGCAATCAACGAAGCCCTGAACGGACTCTTAATCGACGAGGAGGACTAC
CAGGGTCTGCGCAATTCGATCGATGGATTTGATAACTTTGACAACATTGC
GTTGGCACAGAAACTCGAAAAGCACGAACTTACCGAATTCCGTAGGATTG
CCGCCTACTTGTACAAGGGAAATAATCGCTGGAAACAGAGCGTTGAGCTC
TGCAAAAAGGATAAACTCTACAAGGATGCTATGGAGTACGCCGCCGAATC
TTGCAAGCAAGATATTGCCGAAGAGTTGTTGGGTTGGTTCCTAGAACGTG
ACGCTTACGATTGTTTTGCAGCTTGTCTTTATCAGTGTTACGACTTGCTG
CGCCCTGATGTTATCTTGGAGTTGGCCTGGAAACACAAAATCGTTGACTT
TGCCATGCCCTATTTGATTCAGGTTCTGCGCGAATACACAACAAAGGTGG
ACAAACTGGAGTTGAACGAGGCTCAGCGCGAGAAGGAGGACGATTCCACT
GAGCACAAAAACATTATTCAGATGGAGCCACAACTGATGATCACCGCTGG
CCCAGCAATGGGCATTCCTCCACAATATGCACAGAATTATCCACCTGGTG
CAGCAACGGTAACGGCGGCAGGAGGACGCAACATGGGCTATCCCTACTTG
TAGAAGCTTTCTAGACCAT
BS11028.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chc-RG | 5037 | CG9012-PG | 1..5037 | 17..5053 | 25185 | 100 | Plus |
| Chc-RF | 5037 | CG9012-PF | 1..5037 | 17..5053 | 25185 | 100 | Plus |
| Chc-RE | 5037 | CG9012-PE | 1..5037 | 17..5053 | 25185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chc-RG | 5788 | CG9012-RG | 466..5502 | 17..5053 | 25185 | 100 | Plus |
| Chc-RF | 5577 | CG9012-RF | 255..5291 | 17..5053 | 25185 | 100 | Plus |
| Chc-RE | 5683 | CG9012-RE | 361..5397 | 17..5053 | 25185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15828951..15833255 | 4569..265 | 21525 | 100 | Minus |
| X | 23542271 | X | 15828272..15828507 | 5053..4818 | 1180 | 100 | Minus |
| X | 23542271 | X | 15833492..15833703 | 266..55 | 1060 | 100 | Minus |
| X | 23542271 | X | 15828716..15828883 | 4735..4568 | 840 | 100 | Minus |
| X | 23542271 | X | 15828561..15828652 | 4824..4733 | 460 | 100 | Minus |
| X | 23542271 | X | 15834123..15834164 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:15:06 has no hits.
BS11028.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:52:01 Download gff for
BS11028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-RC | 396..5432 | 17..5053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:44 Download gff for
BS11028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-RE | 361..5397 | 17..5053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:55 Download gff for
BS11028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-RC | 396..5432 | 17..5053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:10 Download gff for
BS11028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chc-RE | 361..5397 | 17..5053 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:10 Download gff for
BS11028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15834123..15834164 | 17..58 | 100 | | Minus |
| X | 15828272..15828502 | 4823..5053 | 100 | <- | Minus |
| X | 15828563..15828649 | 4736..4822 | 100 | <- | Minus |
| X | 15828716..15828882 | 4569..4735 | 100 | <- | Minus |
| X | 15828952..15833253 | 267..4568 | 100 | <- | Minus |
| X | 15833492..15833699 | 59..266 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:44 Download gff for
BS11028.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15722305..15722535 | 4823..5053 | 100 | <- | Minus |
| arm_X | 15722596..15722682 | 4736..4822 | 100 | <- | Minus |
| arm_X | 15722749..15722915 | 4569..4735 | 100 | <- | Minus |
| arm_X | 15722985..15727286 | 267..4568 | 100 | <- | Minus |
| arm_X | 15727525..15727732 | 59..266 | 100 | <- | Minus |
| arm_X | 15728156..15728197 | 17..58 | 100 | | Minus |
BS11028.pep Sequence
Translation from 16 to 5052
> BS11028.pep
MTQPLPIRFQEHLQLTNVGINANSFSFSTLTMESDKFICVREKVNDTAQV
VIIDMNDATNPTRRPISADSAIMNPASKVIALKAQKTLQIFNIEMKSKMK
AHTMNEDVVFWKWISLNTLALVTETSVFHWSMEGDSMPQKMFDRHSSLNG
CQIINYRCNASQQWLLLVGISALPSRVAGAMQLYSVERKVSQAIEGHAAS
FATFKIDANKEPTTLFCFAVRTATGGKLHIIEVGAPPNGNQPFAKKAVDV
FFPPEAQNDFPVAMQVSAKYDTIYLITKYGYIHLYDMETATCIYMNRISA
DTIFVTAPHEASGGIIGVNRKGQVLSVTVDEEQIIPYINTVLQNPDLALR
MAVRNNLAGAEDLFVRKFNKLFTAGQYAEAAKVAALAPKAILRTPQTIQR
FQQVQTPAGSTTPPLLQYFGILLDQGKLNKFESLELCRPVLLQGKKQLCE
KWLKEEKLECSEELGDLVKASDLTLALSIYLRANVPNKVIQCFAETGQFQ
KIVLYAKKVNYTPDYVFLLRSVMRSNPEQGAGFASMLVAEEEPLADINQI
VDIFMEHSMVQQCTAFLLDALKHNRPAEGALQTRLLEMNLMSAPQVADAI
LGNAMFTHYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHMLNAE
WLVSFFGTLSVEDSLECLKAMLTANLRQNLQICVQIATKYHEQLTNKALI
DLFEGFKSYDGLFYFLSSIVNFSQDPEVHFKYIQAACKTNQIKEVERICR
ESNCYNPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKY
IEIYVQKVNPSRLPVVVGGLLDVDCSEDIIKNLILVVKGQFSTDELVEEV
EKRNRLKLLLPWLESRVHEGCVEPATHNALAKIYIDSNNNPERYLKENQY
YDSRVVGRYCEKRDPHLACVAYERGLCDRELIAVCNENSLFKSEARYLVG
RRDAELWAEVLSESNPYKRQLIDQVVQTALSETQDPDDISVTVKAFMTAD
LPNELIELLEKIILDSSVFSDHRNLQNLLILTAIKADRTRVMDYINRLEN
YDAPDIANIAISNQLYEEAFAIFKKFDVNTSAIQVLIDQVNNLERANEFA
ERCNEPAVWSQLAKAQLQQGLVKEAIDSYIKADDPSAYVDVVDVASKVES
WDDLVRYLQMARKKARESYIESELIYAYARTGRLADLEEFISGPNHADIQ
KIGNRCFSDGMYDAAKLLYNNVSNFARLAITLVYLKEFQGAVDSARKANS
TRTWKEVCFACVDAEEFRLAQMCGLHIVVHADELEDLINYYQNRGYFDEL
IALLESALGLERAHMGMFTELAILYSKFKPSKMREHLELFWSRVNIPKVL
RAAESAHLWSELVFLYDKYEEYDNAVLAMMAHPTEAWREGHFKDIITKVA
NIELYYKAIEFYLDFKPLLLNDMLLVLAPRMDHTRAVSYFSKTGYLPLVK
PYLRSVQSLNNKAINEALNGLLIDEEDYQGLRNSIDGFDNFDNIALAQKL
EKHELTEFRRIAAYLYKGNNRWKQSVELCKKDKLYKDAMEYAAESCKQDI
AEELLGWFLERDAYDCFAACLYQCYDLLRPDVILELAWKHKIVDFAMPYL
IQVLREYTTKVDKLELNEAQREKEDDSTEHKNIIQMEPQLMITAGPAMGI
PPQYAQNYPPGAATVTAAGGRNMGYPYL*
BS11028.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chc-PG | 1678 | CG9012-PG | 1..1678 | 1..1678 | 8672 | 100 | Plus |
| Chc-PF | 1678 | CG9012-PF | 1..1678 | 1..1678 | 8672 | 100 | Plus |
| Chc-PE | 1678 | CG9012-PE | 1..1678 | 1..1678 | 8672 | 100 | Plus |
| Chc-PD | 1678 | CG9012-PD | 1..1678 | 1..1678 | 8672 | 100 | Plus |
| Chc-PC | 1678 | CG9012-PC | 1..1678 | 1..1678 | 8672 | 100 | Plus |
