Clone Sequence Records
BS11029.3prime Sequence
878 bp (741 high quality bases) assembled on 2006-04-19
> BS11029.3prime
ATGGTCTAGAAAGCTTTTAAAGTTTGAGCGTGTGCTCCTGTAGCATTTCA
ATGTTGTGTTGAACGAGCGCCTGCATAACAGCCTCGGTTTTGATGAAGTG
CACCTTTTCATAGTTGTTCAGACGTCGCTTAGATTTCGTATCCTTGCTGG
TGGTGACCACGTACAGATCCACGCTGATGGCCAGCGAAGGCGGTTGGGCA
TGAACCTTGCCGCCGGCGCTGTGAATGATGACTTTCATTTCGTTGGCCTT
TGGCACTATGTCTTTGCCGAGCATAAAGTGCAAGCCATACAGCAAGCGAG
GGTGTTCCAGTACGGAGGAGGGTTTGAACTTGTAGGTCTCCTCGAACGTT
GGGTCGCTGAACAGATGGTCTGCCTTTATGTCGATGCTCCTGGTCTTCTT
CACAGAGTGCAGCCAATTGGTGGAGAGAACTGGTTTGTTGGAAGCAATGA
CTGTTAGGAACTTATAGGTGCGCTCGCCCTTGTCCATCACAAGCAGGTCG
CACTGCAAGGGATCTTCGGTGATCTCCACCACGTGCTTCAGTGACTTGAG
GACAGTTTCCAAAGCTGGACGATTGCACATGGTGAACGCTACCTTAATTT
TGCCCGTAGTAGTCTTGGCCTTTCTCACGTACAAGTTAATTGCTCTAAGG
GGATCGGCATCCGGCTGACTGAATCGCGTTGTAGTAGCGCCTGATCTGTT
CTTCAGAACTTCCTCGTCAACAGACATTTTAGGCTTCTTGGTAGGGACGT
CCGAGCTGGACGTGGGCTCTTCGCCAGATGTTAAGCGCTTAGCTCGCCTG
CGTGTAGTTGCTGTAGATACATTTGGCTCTTTGGCAGCAGCTGAGCTAGA
TGATGGCTCTTCAATTGAGGGCGTTGTA
BS11029.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1960-PA | 3843 | mu2-RA | 2982..3843 | 878..17 | 4285 | 99.8 | Minus |
| CG1960-PB | 3780 | mu2-RB | 2919..3780 | 878..17 | 4285 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mu2-RC | 4099 | CG1960-RC | 2990..3852 | 878..16 | 4300 | 99.9 | Minus |
| mu2-RB | 4054 | CG1960-RB | 2945..3807 | 878..16 | 4300 | 99.9 | Minus |
| mu2-RA | 4117 | CG1960-RA | 3008..3870 | 878..16 | 4300 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1943253..1943555 | 232..534 | 1515 | 100 | Plus |
| 3L | 28110227 | 3L | 1942981..1943198 | 16..233 | 1090 | 100 | Plus |
| 3L | 28110227 | 3L | 1943877..1944070 | 685..878 | 955 | 99.5 | Plus |
| 3L | 28110227 | 3L | 1943615..1943724 | 535..644 | 550 | 100 | Plus |
| 3L | 28110227 | 3L | 1943780..1943821 | 643..684 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 18:32:27 has no hits.
BS11029.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:33 Download gff for
BS11029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mu2-PA | 2983..3843 | 17..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:15 Download gff for
BS11029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1960-PB | 2920..3780 | 17..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:40:23 Download gff for
BS11029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mu2-RA | 3009..3878 | 6..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:44:49 Download gff for
BS11029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mu2-RA | 3009..3878 | 6..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:44:49 Download gff for
BS11029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1942973..1943196 | 6..231 | 98 | <- | Plus |
| 3L | 1943253..1943555 | 232..534 | 100 | <- | Plus |
| 3L | 1943615..1943722 | 535..642 | 100 | <- | Plus |
| 3L | 1943780..1943821 | 643..684 | 100 | <- | Plus |
| 3L | 1943877..1944069 | 685..877 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:40:23 Download gff for
BS11029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1942973..1943196 | 6..231 | 98 | <- | Plus |
| arm_3L | 1943253..1943555 | 232..534 | 100 | <- | Plus |
| arm_3L | 1943615..1943722 | 535..642 | 100 | <- | Plus |
| arm_3L | 1943780..1943821 | 643..684 | 100 | <- | Plus |
| arm_3L | 1943877..1944069 | 685..877 | 99 | | Plus |
BS11029.5prime Sequence
915 bp (785 high quality bases) assembled on 2006-04-19
> BS11029.5prime
GAAGTTATCAGTCGACATGGCAGATGTAAGCCTGTTTTTTGGCGGTTTGC
CGGCCATTCTTCTGAAAGCGGATACCATTTACCGCATTGGGAGGCAGAAG
GGCCTGGAAATAAGCATCGCCGATGAGTCAATGGAGCTGGCCCACGCCAC
AGCCTGCATACTGCGCCGAGGTGTGGTGCGCCTGGCTGCCCTGGTGGGCA
AGATCTTTGTGAACGACCAGGAGGAGACCGTGGTGGACATCGGCATGGAG
AACGCCGTGGCCGGCAAGGTGAAACTCCGCTTTGGCAATGTGGAGGCCAG
GCTAGAGTTTGGAGAAGATCACGATGAGGTCCACGACAGTAGCGGATTCG
GGGAATGCCTGAAGAACGGATTAAACAACACAACCTTGGACAGCATGGAT
GTTCCGGAAACACAGCCTCCATCCGCCAACACATCAGTCAACACAACGGC
AGATAGCTTATTTATACCCGAGACCCAAGCGGTGTTATGCGAAAGGCCTT
CGACCGGACAAAGAGTGTCGCTGGGCGATGACTTCATGATACCCGAAACG
CAGGATATGCTTGCGGATCTTCCACCTGAACCACCAGTGTTTAAACCCCC
GGTTATTCCCGTAGTTGATAAGCCAGGTCCGACGATAGACAGCGATGAGG
AATCATCTCAGGGCAGCATTATACGCATGTGCACCCAGGATTATAATGAG
GATGCCATCGATGACTTCGATACCTCACAGGTACTCTGCGATGTTCTGCT
GCCTCTTCCGCCGCCAACAGCACCAATTGAAGGTCTGGAAAATCANGATA
CTAAGCGGGATCAACTGGACACCACCGACATGGAAATGAGTGCCTTGAAC
TGGTCGGCTAGCAATTCCAAATGCTGTGCTCTGAGTAGCACCAAAGCGGA
TGATATATTGGCGCG
BS11029.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1960-PA | 3843 | mu2-RA | 1..894 | 17..910 | 4451 | 99.8 | Plus |
| CG1960-PB | 3780 | mu2-RB | 1..894 | 17..910 | 4451 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mu2-RC | 4099 | CG1960-RC | 27..925 | 17..915 | 4469 | 99.8 | Plus |
| mu2-RB | 4054 | CG1960-RB | 27..925 | 17..915 | 4469 | 99.8 | Plus |
| mu2-RA | 4117 | CG1960-RA | 27..925 | 17..915 | 4469 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:39:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1946539..1947021 | 809..327 | 2404 | 99.8 | Minus |
| 3L | 28110227 | 3L | 1947078..1947282 | 330..126 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 1947339..1947449 | 127..17 | 555 | 100 | Minus |
| 3L | 28110227 | 3L | 1946379..1946485 | 915..809 | 520 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:39:37 has no hits.
BS11029.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:35 Download gff for
BS11029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mu2-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:16 Download gff for
BS11029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1960-PB | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:45:45 Download gff for
BS11029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mu2-RA | 23..925 | 9..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:48 Download gff for
BS11029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mu2-RA | 23..925 | 9..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:48 Download gff for
BS11029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1946379..1946484 | 810..915 | 99 | <- | Minus |
| 3L | 1946539..1947019 | 329..809 | 99 | <- | Minus |
| 3L | 1947080..1947280 | 128..328 | 100 | <- | Minus |
| 3L | 1947339..1947453 | 9..127 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:45:45 Download gff for
BS11029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1946379..1946484 | 810..915 | 99 | <- | Minus |
| arm_3L | 1946539..1947019 | 329..809 | 99 | <- | Minus |
| arm_3L | 1947080..1947280 | 128..328 | 100 | <- | Minus |
| arm_3L | 1947339..1947453 | 9..127 | 96 | | Minus |
BS11029.complete Sequence
3875 bp assembled on 2008-08-14
GenBank Submission: FJ636752
> BS11029.complete
GAAGTTATCAGTCGACATGGCAGATGTAAGCCTGTTTTTTGGCGGTTTGC
CGGCCATTCTTCTGAAAGCGGATACCATTTACCGCATTGGGAGGCAGAAG
GGCCTGGAAATAAGCATCGCCGATGAGTCAATGGAGCTGGCCCACGCCAC
AGCCTGCATACTGCGCCGAGGTGTGGTGCGCCTGGCTGCCCTGGTGGGCA
AGATCTTTGTGAACGACCAGGAGGAGACCGTGGTGGACATCGGCATGGAG
AACGCCGTGGCCGGCAAGGTGAAACTCCGCTTTGGCAATGTGGAGGCCAG
GCTAGAGTTTGGAGAAGATCACGATGAGGTCCACGACAGTAGCGGATTCG
GGGAATGCCTGAAGAACGGATTAAACAACACAACCTTGGACAGCATGGAT
GTTCCGGAAACACAGCCTCCATCCGCCAACACATCAGTCAACACAACGGC
AGATAGCTTATTTATACCCGAGACCCAAGCGGTGTTATGCGAAAGGCCTT
CGACCGGACAAAGAGTGTCGCTGGGCGATGACTTCATGATACCCGAAACG
CAGGATATGCTTGCGGATCTTCCACCTGAACCACCAGTGTTTAAACCCCC
GGTTATTCCCGTAGTTGATAAGCCAGGTCCGACGATAGACAGCGATGAGG
AATCATCTCAGGGCAGCATTATACGCATGTGCACCCAGGATTATAATGAG
GATGCCATCGATGACTTCGATACCTCACAGGTACTCTGCGATGTTCTGCT
GCCTCTTCCGCCGCCAACAGCACCAATTGAAGGTCTGGAAAATCAGGATA
CTAAGCGGGATCAACTGGACACCACCGACATGGAAATGAGTGCCTTGAAC
TGGTCGGCTAGCAATTCCAAATGCTGTGCTCTGAGTAGCACCAAAGCGGA
TGATATATTGCCGCGTGGCGATGCCTGCATTACTCCCGATTTGACCGCTC
CGTCCGTAGATAGAAATATCTGCACACCCGATCTATTTGACCTGATCATG
GGGGGGGATAGGAGGCGCGATGGCTCCAGCAGTCCAGATCCGTTCGTTCG
TCCTGCGGACAATACAAATACCGCCACACCGCAGTTTGGCGGAGTTAAAC
AGCTGGTTGTGGCGACGATTGAGACCCCCACTGCCACTCCTGACACGAAT
AGTCAGGAAAAGAATCAAGATATGATAGCCACTCAACGATTTCCACGACA
TAAATTGTTGGAAAGTGACGAGGAAGACAATGGGCAAAACAACCAAGACT
TCGTGGCTACTCAGGCGTTTAACTTAGGACGTCCGCAGGCACCACAAGAA
AATGAAGCCAATCAAGATCTCATAGCGACACAGGCATTTAACTTGGCACC
GCCACAAAAAGTTGATTCACCTAAACCCTCTACAGCTAATGATGCTTCCA
ACCAAGATTTTATAGAAACTCAGGCATTTAACTTAGGAATCCCACAAGCA
AACATGGCTTCACCAGAAAATAATGAGATTTCCAACCAAGATTTGATAGC
CACTCAAGCATTTCCCGCCAAGATCAATAGCTCTCGTTGCCAGGACTTCG
TAGCCACGCAACCTTTTCATGTGGTCAATCAGCATTCCGTGAGTTTACAG
GACAAGGAGAACATTCCACTTGACGACAGTGTCAAAGTTGCATCAGATTC
GAAATTCTTTGAAGCGACTTGCGGTGAGATAGATGCTGTGCTCAATGAAA
TGATTTCAGGGACTGTGGCAACGTCGCCTGTAAGTCCCAATGAGGAGTCG
ATACCATTTTTTGAGCCGTGTGTGATCAAGGATAAGAATCACTATCAGAA
GATCTGTCAGATTGAAGGCGTTTTTAGTAACGTGAGTAACAGGAGTCGTG
GGCGTACTGATGGAACTGGCTTTGGCCGTCTCAAACGGGTGGCCAAATCG
GAATCTCCTCCAGAAACCCCAATCCGTAAGGACAGACGAAGATCGGAGGG
TTCTGAGAGACCGGGAAGTAACTCGAGAGAACGGCTAAACAATTTAGTGG
ATAAAAAATCGGAAGCCCTTAACAAGTCGGTTATCCGGGAACATGGCATC
GATTCCATTCCAGAAGAGATAACAAAGGAAGACAAATCAGACTCAGAAGA
GAAAGGCGATTGTTTCAACAATGTTGTTAATCAATGGCGCTCCCGTAAAA
GACGAATTCAAAGCCGCCCTGGTACTCCAGGAAGCTCTTCAGAAAGGAAT
GAAGTCAACGCAGATGTGGTGGATAAACCCAACGAAGAGCCACCTACCAA
AAATATACGTGCTAGAAAGGCCAAGAAGGCGGAAAAGGCAGACTCATCCA
AGGATATTCCCAAGCCTACGACAAGAACCAGGCGCCAAACCAGCGATGAA
GATGTTCGAACGCCTGATCTAGGAAAAGGAAGAAAGGCCAAGAACACTGC
TTCGAGTAAGGCAGACACATCTAAGAATATTGCCAAAGGCTCGAAGAGAG
TCACTCGACAAAATAGCGCTGATGATGCCGAGTTGCTTGAGGAGGACAGT
TCTGTCCAGACAGAAAGCGGAAAAAGGGTTAAGAAGGTTAAGTCAAGTAA
AGGGGAAACGTCAAAGGACATTCCCAAGGCAAAACCCAGAACTAGGCGCC
AAACTGCCGACGAAGATGCTATGACCCCAAAGGCAGAAAAAGAAAGACAG
ATTCAGGGGGAAGAAACCAAGGATATGTCCAAGCCAGCGGCCAGAACCAG
GCGAAAAGCTAGCGCTGAAGAGACTGAGAGTGCAGCACAAGCCGTCAAAC
CGAAAAGAGGTGGAAAAGGCAAGAAAAACGAGACTACCAAAGCTGAGGCA
ACTGTGGAAAAGCCTATGGTTAGAACCAGGCGCATGACAATCGCCGAAGA
TTCCAGCACCCTGACGGAAGTAAAAACAGGGGGCGCATTAATTAAACGTG
CGGTTGTCCGCATATCCAGGGTAAGCATAGAACAACTCGAGTCTTCCACA
AGCGCTGGAAATAATGCCAGAGTAACTGGGGCTGCTCAGTCGCGTTCTAC
AACGCCCTCAATTGAAGAGCCATCATCTAGCTCAGCTGCTGCCAAGGAGC
CAAATGTATCTACAGCAACTACACGCAGGCGAGCTAAGCGCTTAACATCT
GGCGAAGAGCCCACGTCCAGCTCGGACGTCCCTACCAAGAAGCCTAAAAT
GTCTGTTGACGAGGAAGTTCTGAAGAACAGATCAGGCGCTACTACAACGC
GATTCAGTCAGCCGGATGCCGATCCCCTTAGAGCAATTAACTTGTACGTG
AGAAAGGCCAAGACTACTACGGGCAAAATTAAGGTAGCGTTCACCATGTG
CAATCGTCCAGCTTTGGAAACTGTCCTCAAGTCACTGAAGCACGTGGTGG
AGATCACCGAAGATCCCTTGCAGTGCGACCTGCTTGTGATGGACAAGGGC
GAGCGCACCTATAAGTTCCTAACAGTCATTGCTTCCAACAAACCAGTTCT
CTCCACCAATTGGCTGCACTCTGTGAAGAAGACCAGGAGCATCGACATAA
AGGCAGACCATCTGTTCAGCGACCCAACGTTCGAGGAGACCTACAAGTTC
AAACCCTCCTCCGTACTGGAACACCCTCGCTTGCTGTATGGCTTGCACTT
TATGCTCGGCAAAGACATAGTGCCAAAGGCCAACGAAATGAAAGTCATCA
TTCACAGCGCCGGCGGCAAGGTTCATGCCCAACCGCCTTCGCTGGCCATC
AGCGTGGATCTGTACGTGGTCACCACCAGCAAGGATACGAAATCTAAGCG
ACGTCTGAACAACTATGAAAAGGTGCACTTCATCAAAACCGAGGCTGTTA
TGCAGGCGCTCGTTCAACACAACATTGAAATGCTACAGGAGCACACGCTC
AAACTTTAAAAGCTTTCTAGACCAT
BS11029.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mu2-RA | 3843 | CG1960-PA | 1..3843 | 17..3859 | 19215 | 100 | Plus |
| mu2-RC | 3825 | CG1960-PC | 1..3825 | 17..3859 | 18910 | 99.5 | Plus |
| mu2-RB | 3780 | CG1960-PB | 1627..3780 | 1706..3859 | 10770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mu2-RA | 4117 | CG1960-RA | 27..3870 | 17..3860 | 19220 | 100 | Plus |
| mu2-RC | 4099 | CG1960-RC | 27..3852 | 17..3860 | 18915 | 99.5 | Plus |
| mu2-RB | 4054 | CG1960-RB | 1653..3807 | 1706..3860 | 10775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:45:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1943877..1945054 | 3191..2014 | 5890 | 100 | Minus |
| 3L | 28110227 | 3L | 1945648..1946485 | 1646..809 | 4190 | 100 | Minus |
| 3L | 28110227 | 3L | 1946539..1947021 | 809..327 | 2415 | 100 | Minus |
| 3L | 28110227 | 3L | 1943253..1943555 | 3644..3342 | 1515 | 100 | Minus |
| 3L | 28110227 | 3L | 1942981..1943198 | 3860..3643 | 1090 | 100 | Minus |
| 3L | 28110227 | 3L | 1947078..1947282 | 330..126 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 1945437..1945594 | 1801..1644 | 790 | 100 | Minus |
| 3L | 28110227 | 3L | 1945264..1945383 | 1919..1800 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 1947339..1947449 | 127..17 | 555 | 100 | Minus |
| 3L | 28110227 | 3L | 1943615..1943724 | 3341..3232 | 550 | 100 | Minus |
| 3L | 28110227 | 3L | 1945110..1945205 | 2015..1920 | 480 | 100 | Minus |
| 3L | 28110227 | 3L | 1943780..1943821 | 3233..3192 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:45:37 has no hits.
BS11029.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:38 Download gff for
BS11029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mu2-RA | 61..3916 | 9..3870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:12 Download gff for
BS11029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mu2-RA | 27..3867 | 17..3857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:04 Download gff for
BS11029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mu2-RA | 615..4455 | 17..3857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:36 Download gff for
BS11029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mu2-RA | 27..3867 | 17..3857 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:36 Download gff for
BS11029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1942984..1943196 | 3645..3857 | 100 | <- | Minus |
| 3L | 1943253..1943555 | 3342..3644 | 100 | <- | Minus |
| 3L | 1943615..1943722 | 3234..3341 | 100 | <- | Minus |
| 3L | 1943780..1943821 | 3192..3233 | 100 | <- | Minus |
| 3L | 1947080..1947280 | 128..328 | 100 | <- | Minus |
| 3L | 1947339..1947449 | 17..127 | 100 | | Minus |
| 3L | 1943877..1945052 | 2016..3191 | 100 | <- | Minus |
| 3L | 1945110..1945205 | 1920..2015 | 100 | <- | Minus |
| 3L | 1945264..1945381 | 1802..1919 | 100 | <- | Minus |
| 3L | 1945437..1945591 | 1647..1801 | 100 | <- | Minus |
| 3L | 1945648..1946484 | 810..1646 | 100 | <- | Minus |
| 3L | 1946539..1947019 | 329..809 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:12 Download gff for
BS11029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1945264..1945381 | 1802..1919 | 100 | <- | Minus |
| arm_3L | 1945437..1945591 | 1647..1801 | 100 | <- | Minus |
| arm_3L | 1943780..1943821 | 3192..3233 | 100 | <- | Minus |
| arm_3L | 1942984..1943196 | 3645..3857 | 100 | <- | Minus |
| arm_3L | 1943253..1943555 | 3342..3644 | 100 | <- | Minus |
| arm_3L | 1943615..1943722 | 3234..3341 | 100 | <- | Minus |
| arm_3L | 1943877..1945052 | 2016..3191 | 100 | <- | Minus |
| arm_3L | 1945110..1945205 | 1920..2015 | 100 | <- | Minus |
| arm_3L | 1945648..1946484 | 810..1646 | 100 | <- | Minus |
| arm_3L | 1946539..1947019 | 329..809 | 100 | <- | Minus |
| arm_3L | 1947080..1947280 | 128..328 | 100 | <- | Minus |
| arm_3L | 1947339..1947449 | 17..127 | 100 | | Minus |
BS11029.pep Sequence
Translation from 16 to 3858
> BS11029.pep
MADVSLFFGGLPAILLKADTIYRIGRQKGLEISIADESMELAHATACILR
RGVVRLAALVGKIFVNDQEETVVDIGMENAVAGKVKLRFGNVEARLEFGE
DHDEVHDSSGFGECLKNGLNNTTLDSMDVPETQPPSANTSVNTTADSLFI
PETQAVLCERPSTGQRVSLGDDFMIPETQDMLADLPPEPPVFKPPVIPVV
DKPGPTIDSDEESSQGSIIRMCTQDYNEDAIDDFDTSQVLCDVLLPLPPP
TAPIEGLENQDTKRDQLDTTDMEMSALNWSASNSKCCALSSTKADDILPR
GDACITPDLTAPSVDRNICTPDLFDLIMGGDRRRDGSSSPDPFVRPADNT
NTATPQFGGVKQLVVATIETPTATPDTNSQEKNQDMIATQRFPRHKLLES
DEEDNGQNNQDFVATQAFNLGRPQAPQENEANQDLIATQAFNLAPPQKVD
SPKPSTANDASNQDFIETQAFNLGIPQANMASPENNEISNQDLIATQAFP
AKINSSRCQDFVATQPFHVVNQHSVSLQDKENIPLDDSVKVASDSKFFEA
TCGEIDAVLNEMISGTVATSPVSPNEESIPFFEPCVIKDKNHYQKICQIE
GVFSNVSNRSRGRTDGTGFGRLKRVAKSESPPETPIRKDRRRSEGSERPG
SNSRERLNNLVDKKSEALNKSVIREHGIDSIPEEITKEDKSDSEEKGDCF
NNVVNQWRSRKRRIQSRPGTPGSSSERNEVNADVVDKPNEEPPTKNIRAR
KAKKAEKADSSKDIPKPTTRTRRQTSDEDVRTPDLGKGRKAKNTASSKAD
TSKNIAKGSKRVTRQNSADDAELLEEDSSVQTESGKRVKKVKSSKGETSK
DIPKAKPRTRRQTADEDAMTPKAEKERQIQGEETKDMSKPAARTRRKASA
EETESAAQAVKPKRGGKGKKNETTKAEATVEKPMVRTRRMTIAEDSSTLT
EVKTGGALIKRAVVRISRVSIEQLESSTSAGNNARVTGAAQSRSTTPSIE
EPSSSSAAAKEPNVSTATTRRRAKRLTSGEEPTSSSDVPTKKPKMSVDEE
VLKNRSGATTTRFSQPDADPLRAINLYVRKAKTTTGKIKVAFTMCNRPAL
ETVLKSLKHVVEITEDPLQCDLLVMDKGERTYKFLTVIASNKPVLSTNWL
HSVKKTRSIDIKADHLFSDPTFEETYKFKPSSVLEHPRLLYGLHFMLGKD
IVPKANEMKVIIHSAGGKVHAQPPSLAISVDLYVVTTSKDTKSKRRLNNY
EKVHFIKTEAVMQALVQHNIEMLQEHTLKL*
BS11029.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mu2-PA | 1280 | CG1960-PA | 1..1280 | 1..1280 | 6535 | 100 | Plus |
| mu2-PC | 1274 | CG1960-PC | 1..1274 | 1..1280 | 6486 | 99.5 | Plus |
| mu2-PB | 1259 | CG1960-PB | 1..1259 | 1..1280 | 6396 | 98.4 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 416..1091 | 365..1064 | 179 | 18.6 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 52..411 | 744..1087 | 171 | 24.1 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 366..1238 | 202..1070 | 163 | 17.1 | Plus |
