Clone Sequence Records
BS11037.complete Sequence
2198 bp assembled on 2009-12-07
GenBank Submission: KX801222
> BS11037.complete
GAAGTTATCAGTCGACATGACAATTACGTACACAGGTGAAGTGGCCACTT
GTCGCGGCTTTGGCTGTTTTCTCAAATTGCTGCTCAGATGGCGAGGAAGC
ATTTACAAACTGGTTTGGCTAGATCTTCTGGCCTTCTTGACCATTTACTA
TGCGATCAACATGGTGTATCGCTTTGGCCTCAACCCCGCACAAAAAGAAA
CCTTTGAGGCCATTGTTCAGTACTGTGATAGTTACAGAGAACTCATACCC
CTGTCCTTCGTGCTTGGTTTCTATGTATCGATTGTGATGACCCGTTGGTG
GAATCAGTACACCTCCATTCCCTGGCCAGATCCCATCGCCGTGTTTGTCA
GCTCGAATGTCCATGGCCAGGATGAGCGAGGACGCATGATGAGGCGAACA
ATAATGCGATATGTGTGCCTTTGCCTGACGATGGTCCTGGCGAATGTTTC
GCCGAGGGTGAAGAAGCGTTTCCCCGGCCTAAATAATCTGGTGGAAGCGG
GTCTGCTAAATGACAATGAAAAGACCATCATCGAGACCATGAACAAGGCC
TTTCCCAGACCTTCGAAGCACTGGCTGCCCATCGTTTGGGCTGCCAGTAT
TATAACCAGGGCCAGAAAGGAAGGTCGCATTCGTGATGATTTTGCTGTGA
AGACCATCATCGATGAGCTAAATAAGTTTCGTGGTCAGTGTGGACTCCTC
ATCAGCTACGATACCATTAGTGTACCTCTGGTGTACACCCAAGTGGTGAC
CCTGGCGGTGTATTCGTACTTCCTTACCTGCTGCATGGGTCAACAATGGA
CCGATGGCAAGGTGGTGGGCAATACCACATACCTGAACAAGGTGGATCTA
TACTTTCCTGTATTTACAACGCTGCAGTTCTTCTTCTACATGGGTTGGCT
CAAGGTGGCCGAGTCGCTGATAAATCCATTTGGCGAAGACGATGATGATT
TTGAGGTCAACTGGATGGTGGATCGCAATCTTCAGGTGTCCTATCTGATC
GTCGACGAGATGCACCATGACCATCCGGAGCTGTTAAAGGATCAGTACTG
GGACGAGGTGTTCCCCAACGAGCTGCCCTACACAATAGCTGCCGAACGAT
TCCGGGAGAATCATCCAGAGCCGTCCACTGCCAAGATCGAGGTGCCCAAG
AATGCGGCCATGCCATCGACAATGTCGTCCGTTCGCATCGATGAAATGGC
CGATGATGCCAGTGGCATTCACTTCTCAGCTGGAAATGGCAAAATGCGCC
TGGATTCCTCGCCCTCGCTGGTGAGCGTTTCGGGAACTCTATCCCGGGTG
AATACGGTGGCCTCGGCCCTCAAACGTTTCCTGAGCCGCGACGATAGCAG
GCCGGGATCGGCAACGCCCAGTCAGGATCAGCCCTACAAATTCCCGGCCA
GCGCCAGCTCGGCGAGTTTATCGGGTGCCGTGGTAGGATCGGCTACATCG
GCCGGAAAACCAGCTGGCAGTCTTAGGATTACGCAGCAAGTGATCGAGGA
GGTGGACGAACAGGCGACCATAACATCCATGAGAGCCAATGATCCACGTC
CCAATGTCATGGACATATTCGCACAAACCTCGTCGGGAGCTGGAACCTCT
GGACCGCTGCAGCCACCACCGGCCCACTCGGAACCGGTGGACATCCCGTC
ACGTCCGCCCTCATACAATCGGGCCCAATCCCAGTACGAACCCAACCTAT
TTCCACCTGGCGGAGTGGATGCACTGCTCAGTACTTCAGCTCCTGCGGGC
GGAAGTCCCCTGCTCCTGTCTAATGCAGCCACTGCACCCAGTTCGCCAGT
GGGCGAGAGCTCCAAGTCCCTATACGATCCACAAAAGGGCGCCAGCCGAG
AGACAGTGGAGAGCATGGACCTGAGGTCCTCCACGGATCTACTCGGCGAT
GCGGCAGTGCAGCCCGAAGACGAGGGCGATGACTTCGATAAGCTGAAGGC
GGAACGCGAGAAGGAGAAACTGATGCGACAGCAAAAGAATCTGGCCAGAA
CTATTAGCACCGCTCCGGGAATGGAAGCCACGGCTGTGCCGATGGTGCCA
ATGGTCCCAGTGAACGTGGCAGTGCAACAGGCACAGCTGCAACCAGTTGC
ATCCAGTGCCGATCTTCTGGCCGGCGGAGATCAGTTCTCCAATTCGACGA
TGAAATCGGAGGACGCCATCAACGGCAGTTGAAAGCTTTCTAGACCAT
BS11037.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best1-RA | 2166 | CG6264-PA | 1..2166 | 17..2182 | 10830 | 100 | Plus |
| Best1-RD | 2211 | CG6264-PD | 1..1840 | 17..1856 | 9200 | 100 | Plus |
| Best1-RC | 2355 | CG6264-PC | 1..1183 | 17..1199 | 5915 | 100 | Plus |
| Best1-RD | 2211 | CG6264-PD | 1885..2211 | 1856..2182 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best1-RA | 2885 | CG6264-RA | 439..2605 | 17..2183 | 10835 | 100 | Plus |
| Best1-RD | 2930 | CG6264-RD | 439..2278 | 17..1856 | 9200 | 100 | Plus |
| Best1-RC | 3074 | CG6264-RC | 439..1621 | 17..1199 | 5915 | 100 | Plus |
| Best1-RD | 2930 | CG6264-RD | 2323..2650 | 1856..2183 | 1640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10165017..10165775 | 957..199 | 3795 | 100 | Minus |
| 3R | 32079331 | 3R | 10163199..10163857 | 1856..1198 | 3295 | 100 | Minus |
| 3R | 32079331 | 3R | 10161984..10162313 | 2183..1854 | 1650 | 100 | Minus |
| 3R | 32079331 | 3R | 10164718..10164963 | 1199..954 | 1230 | 100 | Minus |
| 3R | 32079331 | 3R | 10166124..10166238 | 198..84 | 575 | 100 | Minus |
| 3R | 32079331 | 3R | 10167249..10167319 | 87..17 | 355 | 100 | Minus |
| 3L | 28110227 | 3L | 15301523..15301717 | 1066..872 | 330 | 77.9 | Minus |
| 3L | 28110227 | 3L | 15299952..15300034 | 875..957 | 235 | 85.5 | Plus |
| 3L | 28110227 | 3L | 15301956..15302059 | 675..572 | 220 | 80.8 | Minus |
| 3L | 28110227 | 3L | 6250631..6250722 | 964..873 | 205 | 81.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:22:34 has no hits.
BS11037.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:02 Download gff for
BS11037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-RA | 437..2601 | 17..2181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:45 Download gff for
BS11037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-RA | 439..2603 | 17..2181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:24 Download gff for
BS11037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-RA | 437..2601 | 17..2181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:08 Download gff for
BS11037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-RA | 439..2603 | 17..2181 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:08 Download gff for
BS11037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10164719..10164961 | 956..1198 | 100 | <- | Minus |
| 3R | 10166124..10166234 | 88..198 | 100 | <- | Minus |
| 3R | 10167249..10167319 | 17..87 | 100 | | Minus |
| 3R | 10161986..10162310 | 1857..2181 | 100 | <- | Minus |
| 3R | 10163199..10163856 | 1199..1856 | 100 | <- | Minus |
| 3R | 10165019..10165775 | 199..955 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:45 Download gff for
BS11037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5991846..5991956 | 88..198 | 100 | <- | Minus |
| arm_3R | 5992971..5993041 | 17..87 | 100 | | Minus |
| arm_3R | 5987708..5988032 | 1857..2181 | 100 | <- | Minus |
| arm_3R | 5988921..5989578 | 1199..1856 | 100 | <- | Minus |
| arm_3R | 5990441..5990683 | 956..1198 | 100 | <- | Minus |
| arm_3R | 5990741..5991497 | 199..955 | 100 | <- | Minus |
BS11037.3prime Sequence
895 bp (804 high quality bases) assembled on 2006-04-19
> BS11037.3prime
ATGGTCTAGAAAGCTTTCAACTGCCGTTGATGGCGTCCTCCGATTTCATC
GTCGAATTGGAGAACTGATCTCCGCCGGCCAGAAGATCGGCACTGGATGC
AACTGGTTGCAGCTGTGCCTGTTGCACTGCCACGTTCACTGGGACCATTG
GCACCATCGGCACAGCCGTGGCTTCCATTCCCGGAGCGGTGCTAATAGTT
CTGGCCAGATTCTTTTGCTGTCGCATCAGTTTCTCCTTCTCGCGTTCCGC
CTTCAGCTTATCGAAGTCATCGCCCTCGTCTTCGGGCTGCACTGCCGCAT
CGCCGAGTAGATCCGTGGAGGACCTCAGGTCCATGCTCTCCACTGTCTCT
CGGCTGGCGCCCTTTTGTGGATCGTATAGGGACTTGGAGCTCTCGCCCAC
TGGCGAACTGGGTGCAGTGGCTGCATTAGACAGGAGCAGGGGACTTCCGC
CCGCAGGAGCTGAAGTACTGAGCAGTGCATCCACTCCGCCAGGTGGAAAT
AGGTTGGGTTCGTACTGGGATTGGGCCCGATTGTATGAGGGCGGACGTGA
CGGGATGTCCACCGGTTCCGAGTGGGCCGGTGGTGGCTGCAGCGGTCCAG
AGGTTCCAGCTCCCGACGAGGTTTGTGCGAATATGTCCATGACATTGGGA
CGTGGATCATTGGCTCTCATGGATGTTATGGTCGCCTGTTCGTCCACCTC
CTCGATCACTTGCTGCGTAATCCTAAGACTGCCAGCTGGTTTTCCGGCCG
ATGTAGCCGATCCTACCACGGCACCCGATAAACTCGCCGAGCTGGCGCTG
GCCGGGAATTTGTAGGGCTGATCCTGACTGGGCGTTGCCGATCCCGGCCT
GCTATCGTCGCGGCTCAGGAAACGTTTGAGGGGCGAGGCCACCGT
BS11037.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6264-PA | 2166 | Best1-RA | 1288..2166 | 895..17 | 4370 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best1-RB | 3269 | CG6264-RB | 1870..2749 | 895..16 | 4385 | 99.9 | Minus |
| Best1-RA | 2885 | CG6264-RA | 1726..2605 | 895..16 | 4385 | 99.9 | Minus |
| Best1-RD | 2930 | CG6264-RD | 1726..2278 | 895..343 | 2750 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10163199..10163751 | 343..895 | 2750 | 99.8 | Plus |
| 3R | 32079331 | 3R | 10161984..10162313 | 16..345 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:33:35 has no hits.
BS11037.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:50 Download gff for
BS11037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-PA | 1288..2166 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:36 Download gff for
BS11037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6264-PA | 1288..2166 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:56:23 Download gff for
BS11037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-RA | 1726..2605 | 16..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:27:42 Download gff for
BS11037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-RA | 1726..2605 | 16..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:27:42 Download gff for
BS11037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10161984..10162310 | 16..342 | 100 | <- | Plus |
| 3R | 10163199..10163751 | 343..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:56:23 Download gff for
BS11037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5987706..5988032 | 16..342 | 100 | <- | Plus |
| arm_3R | 5988921..5989473 | 343..895 | 99 | | Plus |
BS11037.5prime Sequence
859 bp (812 high quality bases) assembled on 2006-04-19
> BS11037.5prime
GAAGTTATCAGTCGACATGACAATTACGTACACAGGTGAAGTGGCCACTT
GTCGCGGCTTTGGCTGTTTTCTCAAATTGCTGCTCAGATGGCGAGGAAGC
ATTTACAAACTGGTTTGGCTAGATCTTCTGGCCTTCTTGACCATTTACTA
TGCGATCAACATGGTGTATCGCTTTGGCCTCAACCCCGCACAAAAAGAAA
CCTTTGAGGCCATTGTTCAGTACTGTGATAGTTACAGAGAACTCATACCC
CTGTCCTTCGTGCTTGGTTTCTATGTATCGATTGTGATGACCCGTTGGTG
GAATCAGTACACCTCCATTCCCTGGCCAGATCCCATCGCCGTGTTTGTCA
GCTCGAATGTCCATGGCCAGGATGAGCGAGGACGCATGATGAGGCGAACA
ATAATGCGATATGTGTGCCTTTGCCTGACGATGGTCCTGGCGAATGTTTC
GCCGAGGGTGAAGAAGCGTTTCCCCGGCCTAAATAATCTGGTGGAAGCGG
GTCTGCTAAATGACAATGAAAAGACCATCATCGAGACCATGAACAAGGCC
TTTCCCAGACCTTCGAAGCACTGGCTGCCCATCGTTTGGGCTGCCAGTAT
TATAACCAGGGCCAGAAAGGAAGGTCGCATTCGTGATGATTTTGCTGTGA
AGACCATCATCGATGAGCTAAATAAGTTTCGTGGTCAGTGTGGACTCCTC
ATCAGCTACGATACCATTAGTGTACCTCTGGTGTACACCCAAGTGGTGAC
CCTGGCGGTGTATTCGTACTTCCTTACCTGCTGCATGGGTCAACAATGGA
CCGATGGCAAGGTGGTGGGCAATACCACATAACTGACCAAGGTGGATCTA
TACTTTTCT
BS11037.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6264-PA | 2166 | Best1-RA | 1..840 | 17..856 | 4150 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best1-RD | 2930 | CG6264-RD | 439..1278 | 17..856 | 4170 | 99.8 | Plus |
| Best1-RC | 3074 | CG6264-RC | 439..1278 | 17..856 | 4170 | 99.8 | Plus |
| Best1-RB | 3269 | CG6264-RB | 439..1278 | 17..856 | 4170 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10165118..10165775 | 856..199 | 3260 | 99.7 | Minus |
| 3R | 32079331 | 3R | 10166124..10166238 | 198..84 | 575 | 100 | Minus |
| 3R | 32079331 | 3R | 10167249..10167319 | 87..17 | 355 | 100 | Minus |
| 3L | 28110227 | 3L | 15301956..15302059 | 675..572 | 220 | 80.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:05:27 has no hits.
BS11037.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:51 Download gff for
BS11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:38 Download gff for
BS11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6264-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:50:29 Download gff for
BS11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-RB | 439..1281 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:55:41 Download gff for
BS11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best1-RB | 439..1281 | 17..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:55:41 Download gff for
BS11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10165115..10165775 | 199..859 | 99 | <- | Minus |
| 3R | 10166124..10166234 | 88..198 | 100 | <- | Minus |
| 3R | 10167249..10167319 | 17..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:50:29 Download gff for
BS11037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5990837..5991497 | 199..859 | 99 | <- | Minus |
| arm_3R | 5991846..5991956 | 88..198 | 100 | <- | Minus |
| arm_3R | 5992971..5993041 | 17..87 | 100 | | Minus |
BS11037.pep Sequence
Translation from 16 to 2181
> BS11037.pep
MTITYTGEVATCRGFGCFLKLLLRWRGSIYKLVWLDLLAFLTIYYAINMV
YRFGLNPAQKETFEAIVQYCDSYRELIPLSFVLGFYVSIVMTRWWNQYTS
IPWPDPIAVFVSSNVHGQDERGRMMRRTIMRYVCLCLTMVLANVSPRVKK
RFPGLNNLVEAGLLNDNEKTIIETMNKAFPRPSKHWLPIVWAASIITRAR
KEGRIRDDFAVKTIIDELNKFRGQCGLLISYDTISVPLVYTQVVTLAVYS
YFLTCCMGQQWTDGKVVGNTTYLNKVDLYFPVFTTLQFFFYMGWLKVAES
LINPFGEDDDDFEVNWMVDRNLQVSYLIVDEMHHDHPELLKDQYWDEVFP
NELPYTIAAERFRENHPEPSTAKIEVPKNAAMPSTMSSVRIDEMADDASG
IHFSAGNGKMRLDSSPSLVSVSGTLSRVNTVASALKRFLSRDDSRPGSAT
PSQDQPYKFPASASSASLSGAVVGSATSAGKPAGSLRITQQVIEEVDEQA
TITSMRANDPRPNVMDIFAQTSSGAGTSGPLQPPPAHSEPVDIPSRPPSY
NRAQSQYEPNLFPPGGVDALLSTSAPAGGSPLLLSNAATAPSSPVGESSK
SLYDPQKGASRETVESMDLRSSTDLLGDAAVQPEDEGDDFDKLKAEREKE
KLMRQQKNLARTISTAPGMEATAVPMVPMVPVNVAVQQAQLQPVASSADL
LAGGDQFSNSTMKSEDAINGS*
BS11037.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best1-PA | 721 | CG6264-PA | 1..721 | 1..721 | 3743 | 100 | Plus |
| Best1-PD | 736 | CG6264-PD | 1..736 | 1..721 | 3717 | 98 | Plus |
| Best1-PB | 769 | CG6264-PB | 1..769 | 1..721 | 3684 | 93.8 | Plus |
| Best1-PC | 784 | CG6264-PC | 1..784 | 1..721 | 3658 | 92 | Plus |
| Best3-PA | 535 | CG12327-PA | 1..387 | 1..392 | 1389 | 64 | Plus |
