Clone Sequence Records
BS11038.3prime Sequence
819 bp (802 high quality bases) assembled on 2006-04-19
> BS11038.3prime
ATGGTCTAGAAAGCTTTCACAATATGCCATTAGTGTAGTATTGATAACCG
TCGTACAGTTTGGTTGACAGACTTTTTAACGAGTCCTGTACAAGCTGCTC
AACCTTTCGCTCCATTTCTTGTTCGGTTAAATTCATATGAAAGCGTTTTC
GGAGATTCTGTACGGTTCCAGAGCACCCATTCTTAAAGCACGGCAAATGC
GCATTGCTGCGCATAATTTCCACGAAGTTAATAATACGATCCATATGCTT
TCGAGCAGACATCATTCCAACTAACAAGAGCTTATTAAATTCACGCCAAT
GCTCCGAGCTCGTGCCACCCATCACCTCAACAAATTCCGGCGTTAGCTTA
AAGGGCGACTGTTCGAATCCCAAGTTTTTAGGTGATATACTTAAAATAAA
TCCAAAGTCAATGTGTATAATGTGCCCATCCGAATGGAAGAGAATGTTGC
CATTATGCCTGTCCTTAACTTGCAGTAAATATGAAATTAGACAGTAAGCT
GCACAGCTTTGGACGAAGTTCTTCTGCGCGCGCCGAAAACTTTCTCCGCT
TGGTGAGCCGTATTCATCGATAAAATACTCTTTCAACGATTTGTTGGAGT
TCTTCTTAATTTGGTGCAGGGATACAGTGTTAAGGATCGGCTCTATAAGA
CCACTATCATTCGAGAGGCAGACTATTTTGTACGGGCGCACCCACAGATC
TACTTGCTCTTCTTGCCAAATAATTTTAAACATCTGTAAAAGTTGGGTAG
CCATTAGTTCTTGGCGTAAATCATCGCCACACTTTACGATGGCGGAAAGC
AGTCGCCAGTTTGATAGAT
BS11038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7004-PB | 5025 | fwd-RB | 4223..5025 | 819..17 | 4015 | 100 | Minus |
| CG7004-PA | 5025 | fwd-RA | 4223..5025 | 819..17 | 4015 | 100 | Minus |
| CG7004-PC | 4017 | fwd-RC | 3215..4017 | 819..17 | 4015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:27:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwd-RD | 6109 | CG7004-RD | 5174..5976 | 819..17 | 4015 | 100 | Minus |
| fwd-RC | 4415 | CG7004-RC | 3480..4282 | 819..17 | 4015 | 100 | Minus |
| fwd-RA | 7175 | CG7004-RA | 5407..6209 | 819..17 | 4015 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:27:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 306981..307263 | 458..740 | 1415 | 100 | Plus |
| 3L | 28110227 | 3L | 306359..306546 | 17..204 | 940 | 100 | Plus |
| 3L | 28110227 | 3L | 306605..306770 | 205..370 | 830 | 100 | Plus |
| 3L | 28110227 | 3L | 306828..306919 | 369..460 | 460 | 100 | Plus |
| 3L | 28110227 | 3L | 307319..307404 | 734..819 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 18:27:44 has no hits.
BS11038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:52 Download gff for
BS11038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-PB | 4223..5025 | 17..819 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:39 Download gff for
BS11038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7004-PC | 3215..4017 | 17..819 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:39:50 Download gff for
BS11038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-RA | 5407..6218 | 10..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:44:03 Download gff for
BS11038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-RA | 5407..6218 | 10..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:44:03 Download gff for
BS11038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 306350..306546 | 10..204 | 98 | <- | Plus |
| 3L | 306605..306769 | 205..369 | 100 | <- | Plus |
| 3L | 306829..306917 | 370..458 | 100 | <- | Plus |
| 3L | 306982..307256 | 459..733 | 100 | <- | Plus |
| 3L | 307319..307404 | 734..819 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:39:50 Download gff for
BS11038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 307319..307404 | 734..819 | 100 | | Plus |
| arm_3L | 306350..306546 | 10..204 | 98 | <- | Plus |
| arm_3L | 306605..306769 | 205..369 | 100 | <- | Plus |
| arm_3L | 306829..306917 | 370..458 | 100 | <- | Plus |
| arm_3L | 306982..307256 | 459..733 | 100 | <- | Plus |
BS11038.5prime Sequence
819 bp (803 high quality bases) assembled on 2006-04-19
> BS11038.5prime
GAAGTTATCAGTCGACATGAACTCCGTAATATCAGCATTTAAAGGAAAAA
AAAATAGCAATCCATCCTGCAATTCTCCAATGGGATCGGCGAATGGCACT
GCTCCGGTGGAGGCAAAGCCAAACAATTGCTACCAGTACCTGCGCCACAT
ACGCGAAATCGATACAAACAACAAGCTCCTTTCTCCCGTCGTGGTTGTTG
CAGAGGAGAGGCCAGTGAGCAAGGCTGGTTCGCCCTCGACAGTGGCGACC
ATGGCTACTGGAGTCGATGTGGTGGATCACTGCCTGCCCACAACGGTACG
ATTGTCCGTTACCGAGGCGCTATCCGACTTGAACATGAACGGAAAAGCCG
TCGAACCCCCCGTCACCCCATGCACTTCGGTTGGCGACAATGCCAATCTG
GAGGTGGCTGAAACATGGGCTTGTCCACCGCCACAAGCGACGGATGACGA
GGACATATCCGAGCACTCGACAGCCGCCTGCACCAGCACAAGTAGCTCCA
GCGAGCACAGCAACAGCACCGTGGTGCACAGTCCAACTGTGGGGGAGAGC
ACCTGTGACTCCGTGTCCGTCTCGGTAAGCCATCCAAGTCCCAGCGTGAG
TCAGAACAACACATCGTCCGCCACCGGCCGGATGAGTAGCCCCCACAGCC
AGTCGTCGCTCTCCATAGCCTGCGAGCCGCACTCGGCGTCGACCACCACG
CTGTCGTCGCTGGGATCAGACCTGGGCAATGGAAACGGAAGTACCGTACC
CGCGTTTCTAATGGCCGCCCCCGTCACGCTGCCAATTGGCGGCCAGATGC
CCACGATAAAGTGCCTCCC
BS11038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7004-PB | 5025 | fwd-RB | 1..803 | 17..819 | 4015 | 100 | Plus |
| CG7004-PA | 5025 | fwd-RA | 1..803 | 17..819 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwd-RD | 6109 | CG7004-RD | 952..1754 | 17..819 | 4015 | 100 | Plus |
| fwd-RA | 7175 | CG7004-RA | 1185..1987 | 17..819 | 4015 | 100 | Plus |
| fwd-RB | 5586 | CG7004-RB | 429..1231 | 17..819 | 4015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:43:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 313225..314027 | 819..17 | 4015 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:43:11 has no hits.
BS11038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:53 Download gff for
BS11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-PB | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:40 Download gff for
BS11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7004-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:45:50 Download gff for
BS11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-RB | 418..1231 | 5..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:05:38 Download gff for
BS11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-RB | 418..1231 | 5..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:05:38 Download gff for
BS11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 313225..314038 | 5..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:45:50 Download gff for
BS11038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 313225..314038 | 5..819 | 99 | | Minus |
BS11038.complete Sequence
5057 bp assembled on 2009-12-07
GenBank Submission: KX804210
> BS11038.complete
GAAGTTATCAGTCGACATGAACTCCGTAATATCAGCATTTAAAGGAAAAA
AAAATAGCAATCCATCCTGCAATTCTCCAATGGGATCGGCGAATGGCACT
GCTCCGGTGGAGGCAAAGCCAAACAATTGCTACCAGTACCTGCGCCACAT
ACGCGAAATCGATACAAACAACAAGCTCCTTTCTCCCGTCGTGGTTGTTG
CAGAGGAGAGGCCAGTGAGCAAGGCTGGTTCGCCCTCGACAGTGGCGACC
ATGGCTACTGGAGTCGATGTGGTGGATCACTGCCTGCCCACAACGGTACG
ATTGTCCGTTACCGAGGCGCTATCCGACTTGAACATGAACGGAAAAGCCG
TCGAACCCCCCGTCACCCCATGCACTTCGGTTGGCGACAATGCCAATCTG
GAGGTGGCTGAAACATGGGCTTGTCCACCGCCACAAGCGACGGATGACGA
GGACATATCCGAGCACTCGACAGCCGCCTGCACCAGCACAAGTAGCTCCA
GCGAGCACAGCAACAGCACCGTGGTGCACAGTCCAACTGTGGGGGAGAGC
ACCTGTGACTCCGTGTCCGTCTCGGTAAGCCATCCAAGTCCCAGCGTGAG
TCAGAACAACACATCGTCCGCCACCGGCCGGATGAGTAGCCCCCACAGCC
AGTCGTCGCTCTCCATAGCCTGCGAGCCGCACTCGGCGTCGACCACCACG
CTGTCGTCGCTGGGATCAGACCTGGGCAATGGAAACGGAAGTACCGTACC
CGCGTTTCTAATGGCCGCCCCCGTCACGCTGCCAATTGGCGGCCAGATGC
CCACGATAAAGTGCCTCCCAGGAGCAAGCTCAGCGGCCAGCACGCCCAAG
CACTCGCGCTACTCTAAGCCTCGTCTCAGCCTGAGCCGCGTGTTTAATCA
CTCTATGCCCTCCGTGCACGGCCGACCAAATCTCAGTTTAGCGCCAGCTG
GAGTTCCGGGAAGTGTGAATCCGCCGAAACGTATTTCCACGCACCAAAGA
AACCTAAGCTTGGATTTTAGATCCATGGGCATACTTCTTCCGCCTGTCTC
GCAGGTGACCAATAATCACATCAATCACACCCAGCACCACCGCAATCGCA
GCCTCGACAGTGCCTTGCAACGCATTCCGGAGGTCGAAGTGTCATCGCCA
AATGCTGAAAGCGAAAACACGTTCTGCTCACCGTCCATTCTCGGTGCGAC
TATGTGCTCAAAAATTGCCACGACAGCGGCAACTGTAACGTCAGCCCTGT
CCCCACCAGGCACGCCCACACCGGCTCTGATGTCGACGGCGTGCACGCCC
ACGATTGGAGCCGTAAAGGGCAACGTGCAACATCCCGTGCCGAAGCATGA
GCAATCGATTTCTTTGGCAGCTGCTTGCAGGTCCAGTGCCGTCGTGGAAT
CCTGTCCAACGTTACGAATGCGCCCAAAATCCAGCGAGTCGGTTGCGGCC
AATGGACAAGAGATGATCGGCGTCATTGTCAGCAGCACGGGCAACGGCAG
TAGCAGCAGTAATAATAGCTGTAGTAGCGCTGGTAGCACCAAGAAGCGAG
AGGATCTCACCAGTCTTGGATCGGATGATTCTGGCATCATCTGTGGCTCA
GAGTCGGACCAAATATCTCTGAATCGCATATGCCACTCACATGAGTCGCT
TGATTCGGGTGAGATGGATGCGGATGCCGATGCAGAAGAGGAGTGCGTTG
ATCTTATGGATACGACATCCATCGACGAGGAGTACAACATTATGCAGCCG
GACCATCTCTGCCTCTATCCTCCACAGGCCGCTTCCACCGAATTGGACTG
CCGCACCCTGCGTCCGTCTCGGAAACAAAAGCGACAGCAACAGCAGGTCC
TGGAGCGGAAGAATCTACCGTCCCAAAACCAGATCGAAAGCGAAGACTCA
GTGGATGCTGGCGTCGACGCCCGAACACGCTATCGCGTTATGAACATGTC
GCAGGCAGCTATCAATGTTGAACTCGGAACAGCTTCCAATGAAATCGATC
CGGATGTCAACTACAGAGAATCTCACCAAGATCCCATCGCTGATGCACCT
TCCCTCTCCACCCCAAGTGTAGCATCAACGGCGTCAGCCACGCCATCGGT
AACCCCAACACCGATTGCCACTCCGACACCAACGGAGAGCACCAAGAACG
ACCAAGTGCTGTTTAAGAATTTCTTTGGCGCCACCAAGAATGCCATATTT
CGCACAGCCCAGAGCATTATTGAAAACCATGAGAAGAAAAACGCTGCTAA
GCAGAAGGAGCAGCCTGATCACTCAGGGACAGTCAGCTTAGTGGGTTCGC
CAAATGGAGGAAGCAGTGTGCCACAAGACCTGGTCAAGTCTCCCACAGAC
ATTTCGAAAAAGAAGGAATTCTTTAGTTTGCTCACGTCTAGTTCCAGCAT
AAAGGCAGCGGCTGCAGCTGCGGCGAACTCAGCTGCTAGCACTCCTCCTG
CCACGCCTACGGAGGCACTAGCTGCGAATTCAAATTCGAAGCTTCAACCG
CTTTCCGATCCATCTGCCGATTTAAAAGTAAAGGAACGTACTCTCAACTT
GCGTCTACCTGGAGATAGTGAAGGCAGTGAAGGAGCATTGACAAAGTGTT
CATCAATCAACTCGATACACAAACTAAAGCTTCCTGTTCCTGGTGTCGTT
AAGTATTTCATCAGTGAAAAAGCACCTGTGTCTGATGTGCTCCAGAAGCC
AGAGAAAGGCCAAAGCGGCCTTTTGCGTTTCTTTGAGTCGCCAGTGTTCA
ACATACACTTTGCTGTGCATTATCTCTTTTACTCAAAGGAACCGGGAGTC
CTCAGCTTTATCGGCAACAAGATCTTCAGTTTTCCCGACCAAGAGGTTGA
TCTGTACATACCACAATTGGTTGTTATGTACATTCAGATGGATGAGCTAG
CTGAGGTTCTGGATCCGTATCTTACCATTCGGTGTCGCAAGTCGGTTGAC
TTCTCGCTGAAGTGTCTGTGGCTCTTGGAGGCATATAACTACCAAGTGGA
CTCGCTAGGGAACTCACACAACAGTTCTCGGAAATCAAAGCTGGCGCTCA
TGAAGGAAATATTCTCAAAAAGGGAGCACAAACAGACTCAAAACGACCTC
AAGTCTGCAGGTACTGGAGGTCTGCATGTTGGAGAGCCGAGGTCGGTAGT
CGCGCTTGCCAAGAAGACTCACCACCGCTCGCAATCTGATGCCACTGTGC
TCCTAGCCGACTTTCGCTCGCCTCACACACTGAGTATATCGCATCGTATG
TACCAGCAGCCACCCTATACCACACAAACACTTCCCACTACGCCCGCCAA
GCTGTGCCTCGGTGACTTAACTTCCGGCCACGCATTTGATAACGGGTGCA
CCTGCTTCGAGACGGTTCGAGGCCAAGTAAATGGTCTGCTTGGGCAGAGG
ACGCTATGCAGCTGTGGTGCTCCAAAGACGTCACCCCAGAAAGAGTTTAT
GAAGGCATTGATGAACGTTGGTAAAAATCTCACCTCGTGGCCTTCCAAAG
CGGAGAAGACTTCAGCGCTGCGGATGTCCCTCAACTTGATTAACAAAAAC
CTGCCCGCTAGAGTCTGGCTTCCTTTGTACTCAGACATTCCACATCATGT
CGTTCGTATTACAGAGGAGAAGACCGCAGTACTGAACTCGAAGGATAAAA
CCCCCTATATCATATACGTAGAAGTTGTTGAAATTCCTGACATCTATACT
TCTCCCCTGATTCCCAAAATGATGCCTTCACTGCGGCACACCAAGAGCGA
AGAGCACCTGGATGGGTCCTGCCTGAACTCCCACCAACATCTGAGCTGCA
GTCGAACTTCAAGCTGCAGTAGCAGTCAGCAAGGCACAAGTTGCCGCCGA
AAAAAAGGAGCAGATGTAGATGGCGGCTGCGGGGATGCGGGTCCACATAA
TAGCTGCAGCAATGTACATTCGTTAGGTGGACTTCAGTTCCAGGAAGATG
ACGTGTGGTCACAAGAGGAGGACGAAATAACAGCGCAGTATCTTAACATG
CGGAAAGTGAGCGAGCGGGACACAATTTCACAAATATCACTAGATTCCTG
CGATTCAAGAGATCAAGGTCCACCAGTCGTGTTTAATATTGGCGACGTGC
GCTTGCGCCACTGCAGCAATTTGAGCTGCGAAAATACTAAATCCTTCAGT
AACGACCCGGAGGATCCTTCGGCGGCAGCTTTAAAGGAACCGTGGCACGA
AAAGGAAAAGCTTATCCGCGAGTCTTCGCCATACGGCCATCTATCAAACT
GGCGACTGCTTTCCGCCATCGTAAAGTGTGGCGATGATTTACGCCAAGAA
CTAATGGCTACCCAACTTTTACAGATGTTTAAAATTATTTGGCAAGAAGA
GCAAGTAGATCTGTGGGTGCGCCCGTACAAAATAGTCTGCCTCTCGAATG
ATAGTGGTCTTATAGAGCCGATCCTTAACACTGTATCCCTGCACCAAATT
AAGAAGAACTCCAACAAATCGTTGAAAGAGTATTTTATCGATGAATACGG
CTCACCAAGCGGAGAAAGTTTTCGGCGCGCGCAGAAGAACTTCGTCCAAA
GCTGTGCAGCTTACTGTCTAATTTCATATTTACTGCAAGTTAAGGACAGG
CATAATGGCAACATTCTCTTCCATTCGGATGGGCACATTATACACATTGA
CTTTGGATTTATTTTAAGTATATCACCTAAAAACTTGGGATTCGAACAGT
CGCCCTTTAAGCTAACGCCGGAATTTGTTGAGGTGATGGGTGGCACGAGC
TCGGAGCATTGGCGTGAATTTAATAAGCTCTTGTTAGTTGGAATGATGTC
TGCTCGAAAGCATATGGATCGTATTATTAACTTCGTGGAAATTATGCGCA
GCAATGCGCATTTGCCGTGCTTTAAGAATGGGTGCTCTGGAACCGTACAG
AATCTCCGAAAACGCTTTCATATGAATTTAACCGAACAAGAAATGGAGCG
AAAGGTTGAGCAGCTTGTACAGGACTCGTTAAAAAGTCTGTCAACCAAAC
TGTACGACGGTTATCAATACTACACTAATGGCATATTGTGAAAGCTTTCT
AGACCAT
BS11038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwd-RD | 5025 | CG7004-PD | 1..5025 | 17..5041 | 25125 | 100 | Plus |
| fwd-RA | 5025 | CG7004-PA | 1..5025 | 17..5041 | 25125 | 100 | Plus |
| fwd-RB | 5025 | CG7004-PB | 1..5025 | 17..5041 | 25125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwd-RD | 6109 | CG7004-RD | 952..5976 | 17..5041 | 25125 | 100 | Plus |
| fwd-RA | 7175 | CG7004-RA | 1185..6209 | 17..5041 | 25125 | 100 | Plus |
| fwd-RB | 5586 | CG7004-RB | 429..5453 | 17..5041 | 25125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 307693..310179 | 4069..1583 | 12435 | 100 | Minus |
| 3L | 28110227 | 3L | 313024..314027 | 1020..17 | 5020 | 100 | Minus |
| 3L | 28110227 | 3L | 306981..307263 | 4600..4318 | 1415 | 100 | Minus |
| 3L | 28110227 | 3L | 310525..310788 | 1394..1131 | 1320 | 100 | Minus |
| 3L | 28110227 | 3L | 310276..310466 | 1584..1394 | 955 | 100 | Minus |
| 3L | 28110227 | 3L | 306359..306546 | 5041..4854 | 940 | 100 | Minus |
| 3L | 28110227 | 3L | 306605..306770 | 4853..4688 | 830 | 100 | Minus |
| 3L | 28110227 | 3L | 307319..307458 | 4324..4185 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 307511..307632 | 4187..4066 | 610 | 100 | Minus |
| 3L | 28110227 | 3L | 311172..311287 | 1134..1019 | 580 | 100 | Minus |
| 3L | 28110227 | 3L | 306828..306919 | 4689..4598 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rover | 7318 | rover ROVER 7318bp | 3837..3918 | 3007..3094 | 128 | 65.9 | Plus |
BS11038.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:41 Download gff for
BS11038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-RA | 1181..6204 | 17..5040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:22 Download gff for
BS11038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-RB | 429..5452 | 17..5040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:04 Download gff for
BS11038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-RA | 1181..6204 | 17..5040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:46 Download gff for
BS11038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwd-RB | 429..5452 | 17..5040 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:46 Download gff for
BS11038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 311174..311285 | 1021..1132 | 100 | <- | Minus |
| 3L | 306360..306546 | 4854..5040 | 100 | <- | Minus |
| 3L | 306605..306769 | 4689..4853 | 100 | <- | Minus |
| 3L | 306829..306917 | 4600..4688 | 100 | <- | Minus |
| 3L | 306982..307256 | 4325..4599 | 100 | <- | Minus |
| 3L | 307319..307456 | 4187..4324 | 100 | <- | Minus |
| 3L | 307512..307630 | 4068..4186 | 100 | <- | Minus |
| 3L | 307695..310178 | 1584..4067 | 100 | <- | Minus |
| 3L | 310277..310465 | 1395..1583 | 100 | <- | Minus |
| 3L | 310525..310786 | 1133..1394 | 100 | <- | Minus |
| 3L | 313024..314027 | 17..1020 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:22 Download gff for
BS11038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 306982..307256 | 4325..4599 | 100 | <- | Minus |
| arm_3L | 307319..307456 | 4187..4324 | 100 | <- | Minus |
| arm_3L | 307512..307630 | 4068..4186 | 100 | <- | Minus |
| arm_3L | 306360..306546 | 4854..5040 | 100 | <- | Minus |
| arm_3L | 306605..306769 | 4689..4853 | 100 | <- | Minus |
| arm_3L | 306829..306917 | 4600..4688 | 100 | <- | Minus |
| arm_3L | 307695..310178 | 1584..4067 | 100 | <- | Minus |
| arm_3L | 310277..310465 | 1395..1583 | 100 | <- | Minus |
| arm_3L | 310525..310786 | 1133..1394 | 100 | <- | Minus |
| arm_3L | 311174..311285 | 1021..1132 | 100 | <- | Minus |
| arm_3L | 313024..314027 | 17..1020 | 100 | | Minus |
BS11038.pep Sequence
Translation from 16 to 5040
> BS11038.pep
MNSVISAFKGKKNSNPSCNSPMGSANGTAPVEAKPNNCYQYLRHIREIDT
NNKLLSPVVVVAEERPVSKAGSPSTVATMATGVDVVDHCLPTTVRLSVTE
ALSDLNMNGKAVEPPVTPCTSVGDNANLEVAETWACPPPQATDDEDISEH
STAACTSTSSSSEHSNSTVVHSPTVGESTCDSVSVSVSHPSPSVSQNNTS
SATGRMSSPHSQSSLSIACEPHSASTTTLSSLGSDLGNGNGSTVPAFLMA
APVTLPIGGQMPTIKCLPGASSAASTPKHSRYSKPRLSLSRVFNHSMPSV
HGRPNLSLAPAGVPGSVNPPKRISTHQRNLSLDFRSMGILLPPVSQVTNN
HINHTQHHRNRSLDSALQRIPEVEVSSPNAESENTFCSPSILGATMCSKI
ATTAATVTSALSPPGTPTPALMSTACTPTIGAVKGNVQHPVPKHEQSISL
AAACRSSAVVESCPTLRMRPKSSESVAANGQEMIGVIVSSTGNGSSSSNN
SCSSAGSTKKREDLTSLGSDDSGIICGSESDQISLNRICHSHESLDSGEM
DADADAEEECVDLMDTTSIDEEYNIMQPDHLCLYPPQAASTELDCRTLRP
SRKQKRQQQQVLERKNLPSQNQIESEDSVDAGVDARTRYRVMNMSQAAIN
VELGTASNEIDPDVNYRESHQDPIADAPSLSTPSVASTASATPSVTPTPI
ATPTPTESTKNDQVLFKNFFGATKNAIFRTAQSIIENHEKKNAAKQKEQP
DHSGTVSLVGSPNGGSSVPQDLVKSPTDISKKKEFFSLLTSSSSIKAAAA
AAANSAASTPPATPTEALAANSNSKLQPLSDPSADLKVKERTLNLRLPGD
SEGSEGALTKCSSINSIHKLKLPVPGVVKYFISEKAPVSDVLQKPEKGQS
GLLRFFESPVFNIHFAVHYLFYSKEPGVLSFIGNKIFSFPDQEVDLYIPQ
LVVMYIQMDELAEVLDPYLTIRCRKSVDFSLKCLWLLEAYNYQVDSLGNS
HNSSRKSKLALMKEIFSKREHKQTQNDLKSAGTGGLHVGEPRSVVALAKK
THHRSQSDATVLLADFRSPHTLSISHRMYQQPPYTTQTLPTTPAKLCLGD
LTSGHAFDNGCTCFETVRGQVNGLLGQRTLCSCGAPKTSPQKEFMKALMN
VGKNLTSWPSKAEKTSALRMSLNLINKNLPARVWLPLYSDIPHHVVRITE
EKTAVLNSKDKTPYIIYVEVVEIPDIYTSPLIPKMMPSLRHTKSEEHLDG
SCLNSHQHLSCSRTSSCSSSQQGTSCRRKKGADVDGGCGDAGPHNSCSNV
HSLGGLQFQEDDVWSQEEDEITAQYLNMRKVSERDTISQISLDSCDSRDQ
GPPVVFNIGDVRLRHCSNLSCENTKSFSNDPEDPSAAALKEPWHEKEKLI
RESSPYGHLSNWRLLSAIVKCGDDLRQELMATQLLQMFKIIWQEEQVDLW
VRPYKIVCLSNDSGLIEPILNTVSLHQIKKNSNKSLKEYFIDEYGSPSGE
SFRRAQKNFVQSCAAYCLISYLLQVKDRHNGNILFHSDGHIIHIDFGFIL
SISPKNLGFEQSPFKLTPEFVEVMGGTSSEHWREFNKLLLVGMMSARKHM
DRIINFVEIMRSNAHLPCFKNGCSGTVQNLRKRFHMNLTEQEMERKVEQL
VQDSLKSLSTKLYDGYQYYTNGIL*
BS11038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwd-PD | 1674 | CG7004-PD | 1..1674 | 1..1674 | 8694 | 100 | Plus |
| fwd-PA | 1674 | CG7004-PA | 1..1674 | 1..1674 | 8694 | 100 | Plus |
| fwd-PB | 1674 | CG7004-PB | 1..1674 | 1..1674 | 8694 | 100 | Plus |
| fwd-PC | 1338 | CG7004-PC | 1..1338 | 337..1674 | 6955 | 100 | Plus |
| PI4KIIIalpha-PC | 2134 | CG10260-PC | 1873..2132 | 1409..1673 | 494 | 40.1 | Plus |
