Clone Sequence Records
BS11040.complete Sequence
4418 bp assembled on 2009-12-07
GenBank Submission: KX805886
> BS11040.complete
GAAGTTATCAGTCGACATGACGCCCTGCAAGAGCGCCATTATCCTGGATG
CCCAGACGAGCACCACGCTAAAGTGCGAAGACGACGAGCCGATGAGCTGG
TGGACCAGTCAATCGCAATATGTGCATGTAAAGTCCTTCGATAATACGGA
GGATCCGGCTCGACCATTCGGAACTAGCCTGCATCTCATCGAAGTGACGG
CTGACTATGTGGCAGCCTACTATTGCGTGAAGACTTCGAAATTCAGTCAG
ATCGCCAAGGAGGAGCAGTCGGACGAGGCGATGATCGAATTGGTTAATCA
AGGATACGCCAGCTCCATCTACGTGTACGTGAATGATCCGGACACTAAGC
TGGTCGATAGTCATAACGTGGTGACGGCACGCCAGTATACCGACGTAGTC
ATACCCTGTAAACCAGCCATGCCGGACACAGAGGTGCTGCTAGAGACCAG
TAATGGAGAAAGCACGTGGAAAATCAGCTCGAAAGGTCAGATTCAGGGTA
ACCCCAAGTTCTTCGATAGTGTGAGGTACCACCCCAGATGGGGCTTTACC
TTTCGAGTCATTGACTGTGTATCCGGTTACTTGTATTGCAAAACGTTGGA
CTATGAATTGATCATTGACGTTACCTATCCAGAAAAAGACGGCAAACCGC
TGCCAAAGCCCGTGATCAGGTCCTCCGTGGAGCATCACGTCTTCACGGAC
ACCAACTTCACCCTGGATTGCGAGCAGTCCGCCTACGTTGAATCAGTATA
CGGAATGGAATGGTTCACTCCGTCCCGGGATGAGAATCGCATATTTGCCT
CCCAATCAAGAACCGATCCCAAGACCAGGAACAGCACCCACCAGACGGGC
AGGAGCACCTTGACAGTGCTAAATGCACAACCCTCGGACACTGGTCTATA
CAAGTGTGTGACCACAGATAATTCTAACCAGAACGTACAACGTGCCACCT
ACAGGATTAAGGTGCTAAAGCAAAACGAAAGTTACCTGAACGTGGGCGAA
CCATCGGGTCATTACAACGTTCAGGAATATGCCAATCGCACGATCCAAAT
GACCGCGAACTTTGAGGGATTTCCGACGCCCTCCTTCAGTTGGTTCAAAC
CCGATGGCACCGAGGTGCGACAATCGGAGAATAACTTCAAGATTCTCTCC
ACGGAATTGAGCACAATGCTCCAGGTGCTGAACGCCCAATTGCAGGACAG
TGGCACGTATGTCCTCCGTGGATCCAATTCCTTCGGCGTCGTTCAGCGGG
AGTACAACGTCAGTGTGATGGACGCACCGGCGCTGAAGATGTCGGACGCC
TATGTCCAGGTGGGATCCGTGGCGCGACTGGAGTGTACAGTACGCTCCTA
TCCGCCGGCTATCGTGACCTTCTTCTTCCGCCCCTGCAGCCTGGAACCAC
AGTGGCCCACTTGCTCCGTGCTCAATCAGAACTTTAGCTTGCCGAGTGAA
CAGGAGAAATATCAGTTCCAGACCCGGCCGAGACCAGGAAAGTTGAGTGT
GGAACGCATATACGAGGTATCCTTCCTGCCCACAGAGCCGGGAATCCTTA
CGTGCATTGCCCAAAATATCATTGATGGAAAGGAACGAAGAACCCTGACG
AAGGCGCACGTTCTGCTGGGCAACATTTCCGAGAACATGACCATATATGG
CTTCGATAAGGATCACAAAATCGCCAAGGAGGACAATGTGAACTTCACCT
GCGAGGCGTTGGCCTATCACTTCGATGGAAATCTTAAATGGTTCATCAAC
GGAGAGGATTTAAAGGAGTCGGATTCGGTTCACATTGAGACCAGCCATAC
CAAGTACTCCTACAAGAGCACTGTACACATCACAACGATATCCGACAGGG
ATCGTGGAACCTATGAGTGCCGGGCCTACCACAACGACAAGGATGCCGTT
TACAGCAGCCGGGAGATAGACTTGTACGTCCACGATCCCTCTGCTCCTCA
GTGGACAAACGGCGGACAGGAGGGTCACTCGAAAATAAAGCGCAAACTAA
GCCAAACGCTGGAGCTGGAGTGTGCCTCCACAGCGGTTCCCGTGGCAATT
GTGCGTTGGTTTAAGGACGACAAGGAGGTGACCGAATCAAAGCTCAGGCA
CATCATTGAAAAGGAATCCAAGCTGCTGATCACTCACCTGTATCCCGGAG
ATGAAGGCGTCTACAAGTGTGTGGTGGAGAACCGATTGGACAGAATCGAA
CGCTCCTTCACGGTAGTGATATCAGATCTGCCCGGCATTAGCATGGCCTG
GGTGTGGTTCGGTGTGATACTATTCCTCATCCTGATCGGTCTGTGCGTCT
TCCTCGCCGTGCGCTACCAGAAGGAGCACAAGCGGCATCTGGCCCTTAAG
GCTGCCGGATTGGCCAACTTCGAGGAGGGCGCCGTGGGACACATCAATCC
CGATCTGACCCTGGACGAGCAGGCGGAACTGCTGCCCTACAATCGGGAAT
TCGAGTTCCCACGGGAAAACCTGAAACTGGGCAAGCAACTGGGAGCCGGA
GCATTTGGCGTGGTGCTCAAGGGCGAGGCCAAGGGCATCCGGCGAGAGGA
GCCCACCACCACGGTGGCCGTCAAAATGGTCAAGGCGACGGCTGACAACG
AGGTGGTGCGGGCACTGGTCTCCGAGCTCAAGATCATGGTACATCTGGGA
CAGCACTTGAATGTGGTCAATCTCCTGGGTGCAGTTACCAAAAATATTGC
GAAGCGCGAACTAATGGTCATTGTGGAATACTGTCGCTTTGGCAACATAC
AGAACTTCCTTCTGAGGAACAGAAAGTGTTTTATCAATCAAATCAATCCA
GACACCGATCACATTGACCCCAGCATCATGACCCAGCGCATGTCCGACAA
CTACGAACTGCACCGCGATACGAATGGTGGTGGCTTGAAGTACGCCAATG
TCGGTTTCCCGATCCACTCTTACATTAATGAGCCGCACAACAATAACACG
CAACCGCCAACTCATCGCAGAAACTCGGACAATGATCCCCGATCGGGAAC
CCGAGCCGGACGAACCGGATCCGGAACAGCCACCTACAGCTACGACCGTC
AGATGGATACCTGTGCCACCGTAATGACCACCGTCCCAGAAGACGATCAA
ATAATGTCCAATAACTCCGTACAACCCGCCTGGCGTTCCAATTACAAAAC
CGACTCCACGGAAGCGATGACAGTGACCACTGTGGATTTGATTAGTTGGG
CATTCCAAGTGGCAAGGGGCATGGATTACTTGTCCTCCAAGAAGGTGTTG
CACGGCGATCTGGCCGCTAGAAATATTCTCCTCTGCGAGGACAATGTGGT
AAAGATTTGTGACTTTGGTCTGGCACGATCCATGTATCGAGGTGATAACT
ACAAGAAGTCAGAGAATGGCAAATTGCCCATCAAGTGGCTGGCGCTGGAA
TCGCTGAGCGATCATGTGTTCAGCACATACAGCGATGTTTGGTCCTACGG
AATTGTTCTATGGGAGATGTTCTCGCTGGCCAAGGTGCCGTATCCGGGCA
TCGATCCCAACCAGGAGCTATTTAACAAACTGAACGATGGCTACCGCATG
GAGAAGCCGAAATTTGCCAACCAGGAGCTCTACGAGATTATGCTAGAGTG
CTGGCGAAAGAATCCCGAGAGCAGACCTTTGTTTGCTGAGCTGGAAAAGC
GATTTGCAAACATGCTGGGCGAGGATGTAGCCAGCCACTACCTGGACCTA
AACAATCCGTACATGCAGAGCAACATTGAGTACATGAAGAAGCAGTCTAC
GGATTACCTGGCACTGATGGGCTCACCCGACGAACTGGCGCCTGCAGCTC
CGCGCTACGTGAATGGGCACATAGTGCCCGATATACGCATCGAAGAGCTA
CCGGATGACTACATGGAGATGAGCCGGGACTCTGATCCCGATGCCTGCAC
CGCCATATTCTCACCCACACGCCTCGAGGGCGAGTCCTCAGACTTTCCGG
ATTTCTCTAGCGAAACCACTTTCAATTTCCCAGGGGCGCGACAGTCGCCT
ACGCTGAGTAACAATCTCAACAGCGGATCGAGTAAGCCGCTCCGCAAGAA
GAACGGCATGCCAACTGTGGATGTGGCGGATCAGGCGCCGGAGGAGATAC
CTATGCTGCATCGCAGCTCCACTGGATCGGATGGAAGTCCGGAACAGGGA
AGGCGCTTCAATCAGGCCCTTAAGCAGCAGTATGTCACGCCCACACCGTC
CCCTCGCCATCATGTGGAGACCAAACTCAATGGGGAGCCATCCGAAAACT
ATGTGAATATGAAGCCACCGAGGAAGAATATACCCGGCAAAACCACAACA
GGTGGCGGGGGTGCTGCTGCTGGTGCCTCCACGGAGGCCTTCTCGAATCC
CAGCTACCAGCCACTGTCCACCGTCAACGAGAAGGAGCAACGAAGGTATT
AGAAGCTTTCTAGACCAT
BS11040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvr-RA | 4530 | CG8222-PA | 145..4530 | 17..4402 | 21375 | 99.2 | Plus |
| Pvr-RL | 4530 | CG8222-PL | 763..4530 | 635..4402 | 18330 | 99.1 | Plus |
| Pvr-RD | 4530 | CG8222-PD | 763..4530 | 635..4402 | 18330 | 99.1 | Plus |
| Pvr-RL | 4530 | CG8222-PL | 145..589 | 17..461 | 2180 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvr-RA | 5276 | CG8222-RA | 469..4854 | 17..4402 | 21375 | 99.2 | Plus |
| Pvr-RL | 5149 | CG8222-RL | 960..4727 | 635..4402 | 18330 | 99.1 | Plus |
| Pvr-RD | 5893 | CG8222-RD | 1704..5471 | 635..4402 | 18330 | 99.1 | Plus |
| Pvr-RL | 5149 | CG8222-RL | 342..786 | 17..461 | 2180 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8221549..8222114 | 4402..3837 | 2755 | 99.1 | Minus |
| 2L | 23513712 | 2L | 8224051..8224533 | 2706..2224 | 2370 | 99.4 | Minus |
| 2L | 23513712 | 2L | 8225672..8226141 | 1438..969 | 2305 | 99.4 | Minus |
| 2L | 23513712 | 2L | 8224593..8225042 | 2225..1776 | 2235 | 99.8 | Minus |
| 2L | 23513712 | 2L | 8228494..8228937 | 460..17 | 2175 | 99.3 | Minus |
| 2L | 23513712 | 2L | 8225106..8225418 | 1775..1463 | 1430 | 97.1 | Minus |
| 2L | 23513712 | 2L | 8222892..8223163 | 3362..3091 | 1315 | 98.9 | Minus |
| 2L | 23513712 | 2L | 8222581..8222832 | 3612..3361 | 1245 | 99.6 | Minus |
| 2L | 23513712 | 2L | 8223223..8223450 | 3092..2865 | 1110 | 99.1 | Minus |
| 2L | 23513712 | 2L | 8226210..8226395 | 968..783 | 900 | 98.9 | Minus |
| 2L | 23513712 | 2L | 8228083..8228257 | 635..461 | 875 | 100 | Minus |
| 2L | 23513712 | 2L | 8223825..8223984 | 2865..2706 | 785 | 99.4 | Minus |
| 2L | 23513712 | 2L | 8226458..8226606 | 784..636 | 745 | 100 | Minus |
| 2L | 23513712 | 2L | 8222225..8222376 | 3837..3686 | 715 | 98 | Minus |
| 2L | 23513712 | 2L | 8222446..8222518 | 3685..3613 | 350 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:57:06 has no hits.
BS11040.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:30 Download gff for
BS11040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RC | 347..4732 | 17..4402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:04 Download gff for
BS11040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RA | 469..4854 | 17..4402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:08 Download gff for
BS11040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RC | 347..4732 | 17..4402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:31 Download gff for
BS11040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RA | 469..4854 | 17..4402 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:31 Download gff for
BS11040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8222226..8222376 | 3686..3836 | 98 | <- | Minus |
| 2L | 8222446..8222518 | 3613..3685 | 98 | <- | Minus |
| 2L | 8222581..8222830 | 3363..3612 | 99 | <- | Minus |
| 2L | 8223223..8223449 | 2866..3092 | 99 | <- | Minus |
| 2L | 8223825..8223984 | 2706..2865 | 99 | <- | Minus |
| 2L | 8222892..8223161 | 3093..3362 | 98 | <- | Minus |
| 2L | 8224593..8225042 | 1776..2225 | 99 | <- | Minus |
| 2L | 8221549..8222114 | 3837..4402 | 99 | <- | Minus |
| 2L | 8224052..8224531 | 2226..2705 | 99 | <- | Minus |
| 2L | 8225106..8225415 | 1466..1775 | 97 | <- | Minus |
| 2L | 8225486..8225512 | 1439..1465 | 100 | <- | Minus |
| 2L | 8225672..8226141 | 969..1438 | 99 | <- | Minus |
| 2L | 8226210..8226393 | 785..968 | 98 | <- | Minus |
| 2L | 8226458..8226606 | 636..784 | 100 | <- | Minus |
| 2L | 8228083..8228257 | 461..635 | 100 | <- | Minus |
| 2L | 8228494..8228937 | 17..460 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:04 Download gff for
BS11040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8222226..8222376 | 3686..3836 | 98 | <- | Minus |
| arm_2L | 8222446..8222518 | 3613..3685 | 98 | <- | Minus |
| arm_2L | 8223223..8223449 | 2866..3092 | 99 | <- | Minus |
| arm_2L | 8223825..8223984 | 2706..2865 | 99 | <- | Minus |
| arm_2L | 8222892..8223161 | 3093..3362 | 98 | <- | Minus |
| arm_2L | 8224052..8224531 | 2226..2705 | 99 | <- | Minus |
| arm_2L | 8222581..8222830 | 3363..3612 | 99 | <- | Minus |
| arm_2L | 8221549..8222114 | 3837..4402 | 99 | <- | Minus |
| arm_2L | 8224593..8225042 | 1776..2225 | 99 | <- | Minus |
| arm_2L | 8225106..8225415 | 1466..1775 | 97 | <- | Minus |
| arm_2L | 8225486..8225512 | 1439..1465 | 100 | <- | Minus |
| arm_2L | 8225672..8226141 | 969..1438 | 99 | <- | Minus |
| arm_2L | 8226210..8226393 | 785..968 | 98 | <- | Minus |
| arm_2L | 8226458..8226606 | 636..784 | 100 | <- | Minus |
| arm_2L | 8228083..8228257 | 461..635 | 100 | <- | Minus |
| arm_2L | 8228494..8228937 | 17..460 | 99 | | Minus |
BS11040.3prime Sequence
931 bp (782 high quality bases) assembled on 2006-04-19
> BS11040.3prime
ATGGTCTAGAAAGCTTCTAATACCTTCGTTGCTCCTTCTCGTTGACGGTG
GACAGTGGCTGGTAGCTGGGATTCGAGAAGGCCTCCGTGGAGGCACCAGC
AGCAGCACCCCCGCCACCTGTTGTGGTTTTGCCGGGTATATTCTTCCTCG
GTGGCTTCATATTCACATAGTTTTCGGATGGCTCCCCATTGAGTTTGGTC
TCCACATGATGGCGAGGGGACGGTGTGGGCGTGACATACTGCTGCTTAAG
GGCCTGATTGAAGCGCCTTCCCTGTTCCGGACTTCCATCCGATCCAGTGG
AGCTGCGATGCAGCATAGGTATCTCCTCCGGCGCCTGATCCGCCACATCC
ACAGTTGGCATGCCGTTCTTCTTGCGGAGCGGCTTACTCGATCCGCTGTT
GAGATTGTTACTCAGCGTAGGCGACTGTCGCGCCCCTGGGAAATTGAAAG
TGGTTTCGCTAGAGAAATCCGGAAAGTCTGAGGACTCGCCCTCGAGGCGT
GTGGGTGAGAATATGGCGGTGCAGGCATCGGGATCAGAGTCCCGGCTCAT
CTCCATGTAGTCATCCGGTAGCTCTTCGATGCGTATATCGGGCACTATGT
GCCCATTCACGTAGCGCGGAGCTGCAGGCGCCAGTTCGTCGGGTGAGCCC
ATCAGTGCCAGGTAATCCGTAGACTGCTTCTTCATGTACTCAATGTTGCT
CTGCATGTACGGATTGTTTAGGTCCAGGTAGTGGCTGGCTACATCCTCGC
CCAGCATGTTTGCAAATCGCTTTTCCAGCTCAGCAAACAAAGGTCTGCTC
TCGGGATTCTTTCGCCAGCACTCTAGCATAATCTCGTAGAGCTCCTGGTT
GGCAAATTTCGGCTTCTCCATGCGGTAGCCATCGTTCAGTTTGTTAAATA
GCTCCTGGTTTGGATCGATGCCCGGATACGG
BS11040.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8222-PA | 4530 | Pvr-RA | 3616..4530 | 931..17 | 4300 | 98.7 | Minus |
| CG8222-PB | 4530 | Pvr-RB | 3616..4530 | 931..17 | 4300 | 98.7 | Minus |
| CG8222-PC | 4386 | Pvr-RC | 3472..4386 | 931..17 | 4300 | 98.7 | Minus |
| CG8222-PD | 4530 | Pvr-RD | 3616..4530 | 931..17 | 4300 | 98.7 | Minus |
| CG8222-PE | 4512 | Pvr-RE | 3598..4512 | 931..17 | 4300 | 98.7 | Minus |
| CG8222-PF | 3648 | Pvr-RF | 2734..3648 | 931..17 | 4300 | 98.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvr-RL | 5149 | CG8222-RL | 3813..4727 | 931..17 | 4410 | 98.8 | Minus |
| Pvr-RK | 5249 | CG8222-RK | 3913..4827 | 931..17 | 4410 | 98.8 | Minus |
| Pvr-RO | 5246 | CG8222-RO | 3910..4824 | 931..17 | 4410 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8221549..8222114 | 17..582 | 2755 | 99.1 | Plus |
| 2L | 23513712 | 2L | 8222225..8222376 | 582..733 | 715 | 98 | Plus |
| 2L | 23513712 | 2L | 8222581..8222705 | 807..931 | 595 | 98.4 | Plus |
| 2L | 23513712 | 2L | 8222446..8222518 | 734..806 | 350 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-01-31 20:05:59 has no hits.
BS11040.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:54 Download gff for
BS11040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-PA | 3616..4530 | 17..931 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:41 Download gff for
BS11040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8222-PF | 2734..3648 | 17..931 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:36:11 Download gff for
BS11040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RO | 3910..4824 | 17..931 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:48:56 Download gff for
BS11040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RO | 3910..4824 | 17..931 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:48:56 Download gff for
BS11040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8221549..8222114 | 17..582 | 99 | <- | Plus |
| 2L | 8222226..8222376 | 583..733 | 98 | <- | Plus |
| 2L | 8222446..8222518 | 734..806 | 98 | <- | Plus |
| 2L | 8222581..8222705 | 807..931 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:36:11 Download gff for
BS11040.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8221549..8222114 | 17..582 | 99 | <- | Plus |
| arm_2L | 8222226..8222376 | 583..733 | 98 | <- | Plus |
| arm_2L | 8222446..8222518 | 734..806 | 98 | <- | Plus |
| arm_2L | 8222581..8222705 | 807..931 | 98 | | Plus |
BS11040.5prime Sequence
911 bp (853 high quality bases) assembled on 2006-04-19
> BS11040.5prime
GAAGTTATCAGTCGACATGACGCCCTGCAAGAGCGCCATTATCCTGGATG
CCCAGACGAGCACCACGCTAAAGTGCGAAGACGACGAGCCGATGAGCTGG
TGGACCAGTCAATCGCAATATGTGCATGTAAAGTCCTTCGATAATACGGA
GGATCCGGCTCGACCATTCGGAACTAGCCTGCATCTCATCGAAGTGACGG
CTGACTATGTGGCAGCCTACTATTGCGTGAAGACTTCGAAATTCAGTCAG
ATCGCCAAGGAGGAGCAGTCGGACGAGGCGATGATCGAATTGGTTAATCA
AGGATACGCCAGCTCCATCTACGTGTACGTGAATGATCCGGACACTAAGC
TGGTCGATAGTCATAACGTGGTGACGGCACGCCAGTATACCGACGTAGTC
ATACCCTGTAAACCAGCCATGCCGGACACAGAGGTGCTGCTAGAGACCAG
TAATGGAGAAAGCACGTGGAAAATCAGCTCGAAAGGTCAGATTCAGGGTA
ACCCCAAGTTCTTCGATAGTGTGAGGTACCACCCCAGATGGGGCTTTACC
TTTCGAGTCATTGACTGTGTATCCGGTTACTTGTATTGCAAAACGTTGGA
CTATGAATTGATCATTGACGTTACCTATCCAGAAAAAGACGGCAAACCGC
TGCCAAAGCCCGTGATCAGGTCCTCCGTGGAGCATCACGTCTTCACGGAC
ACCAACTTCACCCTGGATTGCGAGCAGTCCGCCTACGTTGAATCAGTATA
CGGAATGGAATGGTTCACTCCGTCCCGGGATGAGAATCGCATATTTGCCT
CCCAATCAAGAACCGATCCCAAGACCAGGAACAGCACCCACCAGACGGGC
AGGAGCACCTTGACAGTGCTAAATGCACAACCCTCGGACACTGGTCTATA
CAAGTGTGTGA
BS11040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8222-PA | 4530 | Pvr-RA | 145..1039 | 17..911 | 4375 | 99.5 | Plus |
| CG8222-PC | 4386 | Pvr-RC | 1..895 | 17..911 | 4375 | 99.5 | Plus |
| CG8222-PB | 4530 | Pvr-RB | 145..589 | 17..461 | 2150 | 99.3 | Plus |
| CG8222-PD | 4530 | Pvr-RD | 145..589 | 17..461 | 2150 | 99.3 | Plus |
| CG8222-PE | 4512 | Pvr-RE | 145..589 | 17..461 | 2150 | 99.3 | Plus |
| CG8222-PB | 4530 | Pvr-RB | 763..1039 | 635..911 | 1360 | 99.6 | Plus |
| CG8222-PD | 4530 | Pvr-RD | 763..1039 | 635..911 | 1360 | 99.6 | Plus |
| CG8222-PE | 4512 | Pvr-RE | 746..1021 | 636..911 | 1355 | 99.6 | Plus |
| CG8222-PF | 3648 | Pvr-RF | 1..157 | 755..911 | 760 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvr-RA | 5276 | CG8222-RA | 469..1363 | 17..911 | 4415 | 99.6 | Plus |
| Pvr-RO | 5246 | CG8222-RO | 469..1360 | 17..911 | 4360 | 99.2 | Plus |
| Pvr-RL | 5149 | CG8222-RL | 342..786 | 17..461 | 2180 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8228494..8228937 | 460..17 | 2175 | 99.3 | Minus |
| 2L | 23513712 | 2L | 8228083..8228257 | 635..461 | 875 | 100 | Minus |
| 2L | 23513712 | 2L | 8226458..8226606 | 784..636 | 745 | 100 | Minus |
| 2L | 23513712 | 2L | 8226267..8226395 | 911..783 | 630 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:50:38 has no hits.
BS11040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:56 Download gff for
BS11040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-PC | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:43 Download gff for
BS11040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8222-PC | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:01:50 Download gff for
BS11040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RA | 469..1362 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:44 Download gff for
BS11040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RA | 469..1362 | 17..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:44 Download gff for
BS11040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8226268..8226393 | 785..910 | 99 | <- | Minus |
| 2L | 8226458..8226606 | 636..784 | 100 | <- | Minus |
| 2L | 8228083..8228257 | 461..635 | 100 | <- | Minus |
| 2L | 8228494..8228937 | 17..460 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:01:50 Download gff for
BS11040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8226268..8226393 | 785..910 | 99 | <- | Minus |
| arm_2L | 8226458..8226606 | 636..784 | 100 | <- | Minus |
| arm_2L | 8228083..8228257 | 461..635 | 100 | <- | Minus |
| arm_2L | 8228494..8228937 | 17..460 | 99 | | Minus |
BS11040.pep Sequence
Translation from 16 to 4401
> BS11040.pep
MTPCKSAIILDAQTSTTLKCEDDEPMSWWTSQSQYVHVKSFDNTEDPARP
FGTSLHLIEVTADYVAAYYCVKTSKFSQIAKEEQSDEAMIELVNQGYASS
IYVYVNDPDTKLVDSHNVVTARQYTDVVIPCKPAMPDTEVLLETSNGEST
WKISSKGQIQGNPKFFDSVRYHPRWGFTFRVIDCVSGYLYCKTLDYELII
DVTYPEKDGKPLPKPVIRSSVEHHVFTDTNFTLDCEQSAYVESVYGMEWF
TPSRDENRIFASQSRTDPKTRNSTHQTGRSTLTVLNAQPSDTGLYKCVTT
DNSNQNVQRATYRIKVLKQNESYLNVGEPSGHYNVQEYANRTIQMTANFE
GFPTPSFSWFKPDGTEVRQSENNFKILSTELSTMLQVLNAQLQDSGTYVL
RGSNSFGVVQREYNVSVMDAPALKMSDAYVQVGSVARLECTVRSYPPAIV
TFFFRPCSLEPQWPTCSVLNQNFSLPSEQEKYQFQTRPRPGKLSVERIYE
VSFLPTEPGILTCIAQNIIDGKERRTLTKAHVLLGNISENMTIYGFDKDH
KIAKEDNVNFTCEALAYHFDGNLKWFINGEDLKESDSVHIETSHTKYSYK
STVHITTISDRDRGTYECRAYHNDKDAVYSSREIDLYVHDPSAPQWTNGG
QEGHSKIKRKLSQTLELECASTAVPVAIVRWFKDDKEVTESKLRHIIEKE
SKLLITHLYPGDEGVYKCVVENRLDRIERSFTVVISDLPGISMAWVWFGV
ILFLILIGLCVFLAVRYQKEHKRHLALKAAGLANFEEGAVGHINPDLTLD
EQAELLPYNREFEFPRENLKLGKQLGAGAFGVVLKGEAKGIRREEPTTTV
AVKMVKATADNEVVRALVSELKIMVHLGQHLNVVNLLGAVTKNIAKRELM
VIVEYCRFGNIQNFLLRNRKCFINQINPDTDHIDPSIMTQRMSDNYELHR
DTNGGGLKYANVGFPIHSYINEPHNNNTQPPTHRRNSDNDPRSGTRAGRT
GSGTATYSYDRQMDTCATVMTTVPEDDQIMSNNSVQPAWRSNYKTDSTEA
MTVTTVDLISWAFQVARGMDYLSSKKVLHGDLAARNILLCEDNVVKICDF
GLARSMYRGDNYKKSENGKLPIKWLALESLSDHVFSTYSDVWSYGIVLWE
MFSLAKVPYPGIDPNQELFNKLNDGYRMEKPKFANQELYEIMLECWRKNP
ESRPLFAELEKRFANMLGEDVASHYLDLNNPYMQSNIEYMKKQSTDYLAL
MGSPDELAPAAPRYVNGHIVPDIRIEELPDDYMEMSRDSDPDACTAIFSP
TRLEGESSDFPDFSSETTFNFPGARQSPTLSNNLNSGSSKPLRKKNGMPT
VDVADQAPEEIPMLHRSSTGSDGSPEQGRRFNQALKQQYVTPTPSPRHHV
ETKLNGEPSENYVNMKPPRKNIPGKTTTGGGGAAAGASTEAFSNPSYQPL
STVNEKEQRRY*
BS11040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvr-PA | 1509 | CG8222-PA | 49..1509 | 1..1461 | 7733 | 100 | Plus |
| Pvr-PO | 1499 | CG8222-PO | 49..1499 | 1..1461 | 7644 | 99.2 | Plus |
| Pvr-PE | 1503 | CG8222-PE | 49..1503 | 1..1461 | 7393 | 96.5 | Plus |
| Pvr-PL | 1509 | CG8222-PL | 49..1509 | 1..1461 | 7392 | 96.2 | Plus |
| Pvr-PD | 1509 | CG8222-PD | 49..1509 | 1..1461 | 7392 | 96.2 | Plus |
