Clone Sequence Records
BS11042.complete Sequence
3752 bp assembled on 2009-12-07
GenBank Submission: KX806253
> BS11042.complete
GAAGTTATCAGTCGACATGTGGCGGCAGTCAACGATACTGGCCGCGTTAC
TAGTGGCTCTTTTGTGTGCGGGCAGTGCAGAAAGCAAAGGCAATCGCCCA
CCAAGAATCACCAAACAACCGGCACCCGGAGAATTGCTCTTCAAAGTGGC
GCAACAGAATAAGGAAAGTGACAATCCATTCATAATCGAGTGCGAAGCCG
ATGGACAACCCGAGCCAGAATATAGTTGGATCAAGAACGGCAAGAAGTTC
GATTGGCAGGCGTACGATAACCGCATGCTGCGGCAGCCAGGACGTGGCAC
CCTGGTGATCACCATACCCAAGGACGAGGATCGCGGCCACTATCAGTGCT
TTGCGTCCAATGAATTCGGAACGGCCACCTCGAACTCAGTATATGTGCGT
AAGGCCGAGCTGAATGCCTTCAAGGATGAGGCGGCCAAGACACTGGAGGC
CGTCGAGGGTGAGCCCTTTATGCTGAAATGTGCCGCACCCGATGGTTTTC
CCAGTCCGACAGTCAACTGGATGATCCAGGAGTCCATCGATGGCAGCATC
AAGTCGATCAACAACTCTCGCATGACCCTCGATCCTGAGGGTAATCTCTG
GTTCTCGAATGTTACCCGTGAGGATGCCAGCTCCGATTTCTACTATGCCT
GCTCGGCCACCTCGGTGTTTCGCAGTGAATACAAGATTGGCAACAAGGTG
CTCCTCGATGTCAAACAGATGGGCGTTAGTGCCTCGCAGAACAAGCATCC
GCCCGTGCGTCAATATGTTTCCCGTCGCCAGTCCTTGGCGTTGCGTGGCA
AGCGAATGGAACTGTTTTGCATCTACGGTGGAACACCGCTGCCGCAGACC
GTGTGGAGCAAGGATGGCCAGCGTATACAGTGGAGCGATCGAATAACGCA
AGGACACTATGGCAAATCACTGGTCATTCGGCAGACAAATTTCGATGATG
CCGGCACATACACCTGCGACGTGTCCAACGGTGTGGGCAATGCCCAATCC
TTCTCCATCATTCTGAATGTTAACTCCGTGCCGTACTTTACCAAAGAACC
TGAAATCGCCACCGCCGCCGAAGACGAAGAGGTTGTCTTCGAGTGTCGCG
CTGCTGGTGTACCAGAGCCCAAGATCAGTTGGATTCACAATGGTAAGCCC
ATCGAGCAGAGCACCCCGAATCCCCGACGAACGGTTACGGACAACACAAT
TCGCATTATCAATCTGGTTAAGGGCGATACTGGTAACTACGGTTGCAACG
CCACCAATTCGCTGGGATATGTGTATAAGGATGTCTATCTAAATGTCCAG
GCTGAGCCGCCAACGATTTCCGAAGCTCCAGCAGCTGTATCCACTGTCGA
TGGAAGGAATGTGACCATTAAGTGCAGGGTTAACGGTTCCCCCAAGCCTC
TGGTTAAATGGCTAAGGGCCAGCAACTGGCTGACCGGAGGTCGTTACAAT
GTCCAAGCTAACGGTGACCTGGAGATCCAAGATGTGACATTCTCGGATGC
CGGCAAATACACATGCTATGCGCAGAACAAGTTTGGTGAAATTCAAGCCG
ATGGTTCGCTGGTGGTCAAGGAGCATACGAGAATTACCCAAGAGCCGCAA
AACTACGAGGTGGCCGCCGGACAATCGGCCACGTTCCGCTGTAACGAGGC
CCACGACGATACGCTGGAGATTGAGATCGATTGGTGGAAGGATGGCCAGT
CCATTGACTTTGAGGCCCAGCCGCGATTCGTGAAGACCAATGATAATTCC
CTGACGATTGCCAAGACAATGGAGTTGGATTCTGGCGAATATACGTGCGT
GGCCCGGACGCGTTTGGATGAGGCAACGGCCAGGGCGAATTTGATTGTCC
AGGATGTGCCGAATGCACCAAAACTGACCGGCATCACCTGCCAGGCCGAC
AAGGCCGAGATCCACTGGGAACAGCAGGGTGACAATCGTTCGCCCATTCT
GCACTACACCATTCAGTTCAATACATCGTTCACGCCCGCCTCCTGGGATG
CCGCCTACGAGAAGGTGCCCAACACGGACTCCTCGTTCGTCGTCCAGATG
TCACCGTGGGCCAACTATACGTTCCGTGTGATTGCCTTCAACAAGATCGG
AGCCTCGCCGCCGTCGGCGCACAGCGATAGCTGCACCACCCAGCCGGATG
TGCCCTTCAAGAATCCCGACAATGTCGTTGGCCAGGGCACTGAGCCCAAC
AATCTGGTCATCTCGTGGACTCCCATGCCCGAAATCGAGCACAATGCCCC
CAATTTCCATTATTATGTTAGCTGGAAACGCGATATTCCTGCCGCTGCGT
GGGAAAACAATAACATATTCGACTGGCGACAGAACAACATTGTGATTGCC
GATCAACCGACTTTCGTGAAATACCTGATCAAGGTGGTGGCCATCAACGA
TAGGGGTGAGTCCAATGTGGCCGCCGAGGAGGTGGTTGGCTACTCTGGCG
AAGATCGTCCCCTGGATGCGCCCACCAACTTCACAATGAGGCAAATCACA
TCATCGACCAGTGGCTACATGGCCTGGACGCCGGTAAGTGAGGAATCGGT
GCGCGGACACTTCAAGGGCTACAAAATCCAAACGTGGACGGAGAACGAGG
GCGAGGAGGGTCTGCGGGAGATCCATGTGAAGGGTGATACCCACAACGCT
CTGGTCACACAATTCAAGCCCGATTCAAAGAACTATGCCCGCATTTTGGC
TTACAATGGACGCTTCAATGGCCCACCCAGTGCCGTCATCGACTTCGATA
CTCCGGAGGGTGTACCATCGCCGGTTCAGGGACTGGATGCCTATCCTCTG
GGCTCCTCGGCCTTCATGCTCCACTGGAAGAAGCCGCTGTATCCCAATGG
CAAGCTCACTGGCTACAAGATCTACTACGAGGAGGTTAAGGAGAGCTATG
TGGGCGAGCGACGCGAATACGATCCACACATCACCGATCCCAGGGTCACA
CGCATGAAGATGGCCGGCCTGAAGCCCAACTCCAAGTACCGCATCTCCAT
CACTGCCACCACGAAAATGGGCGAGGGATCTGAACACTATATCGAAAAGA
CCACGCTCAAGGATGCCGTCAATGTGGCCCCTGCCACGCCATCTTTCTCC
TGGGAGCAACTGCCATCCGACAATGGACTAGCCAAGTTCCGCATCAACTG
GCTGCCAAGTACCGAGGGTCATCCAGGCACTCACTTCTTTACGATGCACA
GGATCAAGGGCGAAACCCAATGGATACGCGAGAATGAGGAAAAGAACTCC
GATTACCAGGAGGTCGGTGGCTTAGATCCGGAGACCGCCTACGAGTTCCG
CGTGGTGTCCGTGGATGGCCACTTTAACACGGAGAGTGCCACGCAGGAGA
TCGACACGAACACCGTTGAGGGACCAATAATGGTGGCCAACGAGACGGTG
GCCAATGCCGGATGGTTCATTGGCATGATGCTGGCCCTGGCCTTCATCAT
CATCCTCTTCATCATCATCTGCATTATCCGACGCAATCGGGGCGGAAAGT
ACGATGTCCACGATCGGGAGCTGGCCAACGGCCGGCGGGATTATCCCGAA
GAGGGCGGATTCCACGAGTACTCGCAACCGTTGGATAACAAGAGCGCTGG
TCGCCAATCCGTGAGTTCAGCGAACAAACCGGGCGTGGAAAGCGATACTG
ATTCGATGGCCGAATACGGTGATGGCGATACAGGCATGAATGAAGATGGA
TCCTTTATTGGCCAATATGGACGCAAAGGCCTTTGAAAGCTTTCTAGACC
AT
BS11042.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrg-RH | 3720 | CG1634-PH | 1..3720 | 17..3736 | 18585 | 100 | Plus |
| Nrg-RF | 3720 | CG1634-PF | 1..3720 | 17..3736 | 18585 | 100 | Plus |
| Nrg-RD | 3720 | CG1634-PD | 1..3720 | 17..3736 | 18585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrg-RH | 5272 | CG1634-RH | 1313..5032 | 17..3736 | 18585 | 100 | Plus |
| Nrg-RF | 5064 | CG1634-RF | 273..3992 | 17..3736 | 18585 | 100 | Plus |
| Nrg-RD | 5059 | CG1634-RD | 268..3987 | 17..3736 | 18585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8544850..8547663 | 220..3033 | 14070 | 100 | Plus |
| X | 23542271 | X | 8547970..8548357 | 3194..3581 | 1925 | 99.7 | Plus |
| X | 23542271 | X | 8547738..8547906 | 3034..3202 | 845 | 100 | Plus |
| X | 23542271 | X | 8532333..8532464 | 88..219 | 660 | 100 | Plus |
| X | 23542271 | X | 8548422..8548526 | 3580..3684 | 525 | 100 | Plus |
| X | 23542271 | X | 8531947..8532020 | 17..90 | 370 | 100 | Plus |
| X | 23542271 | X | 8550080..8550135 | 3681..3736 | 265 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:15:02 has no hits.
BS11042.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:25 Download gff for
BS11042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrg-RC | 299..4017 | 17..3735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:43 Download gff for
BS11042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrg-RD | 268..3986 | 17..3735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:11 Download gff for
BS11042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrg-RC | 299..4017 | 17..3735 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:20 Download gff for
BS11042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrg-RD | 268..3986 | 17..3735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:20 Download gff for
BS11042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8531947..8532019 | 17..89 | 100 | -> | Plus |
| X | 8532335..8532464 | 90..219 | 100 | -> | Plus |
| X | 8544850..8547663 | 220..3033 | 100 | -> | Plus |
| X | 8547738..8547905 | 3034..3201 | 100 | -> | Plus |
| X | 8547978..8548355 | 3202..3579 | 100 | -> | Plus |
| X | 8548422..8548525 | 3580..3683 | 100 | -> | Plus |
| X | 8550083..8550134 | 3684..3735 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:43 Download gff for
BS11042.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8425980..8426052 | 17..89 | 100 | -> | Plus |
| arm_X | 8426368..8426497 | 90..219 | 100 | -> | Plus |
| arm_X | 8438883..8441696 | 220..3033 | 100 | -> | Plus |
| arm_X | 8441771..8441938 | 3034..3201 | 100 | -> | Plus |
| arm_X | 8442011..8442388 | 3202..3579 | 100 | -> | Plus |
| arm_X | 8442455..8442558 | 3580..3683 | 100 | -> | Plus |
| arm_X | 8444116..8444167 | 3684..3735 | 98 | | Plus |
BS11042.3prime Sequence
876 bp (783 high quality bases) assembled on 2006-04-19
> BS11042.3prime
ATGGTCTAGAAAGCTTTCAAAGGCCTTTGCGTCCATATTGGCCAATAAAG
GATCCATCTTCATTCATGCCTGTATCGCCATCACCGTATTCGGCCATCGA
ATCAGTATCGCTTTCCACGCCCGGTTTGTTCGCTGAACTCACGGATTGGC
GACCAGCGCTCTTGTTATCCAACGGTTGCGAGTACTCGTGGAATCCGCCC
TCTTCGGGATAATCCCGCCGGCCGTTGGCCAGCTCCCGATCGTGGACATC
GTACTTTCCGCCCCGATTGCGTCGGATAATGCAGATGATGATGAAGAGGA
TGATGATGAAGGCCAGGGCCAGCATCATGCCAATGAACCATCCGGCATTG
GCCACCGTCTCGTTGGCCACCATTATTGGTCCCTCAACGGTGTTCGTGTC
GATCTCCTGCGTGGCACTCTCCGTGTTAAAGTGGCCATCCACGGACACCA
CGCGGAACTCGTAGGCGGTCTCCGGATCTAAGCCACCGACCTCCTGGTAA
TCGGAGTTCTTTTCCTCATTCTCGCGTATCCATTGGGTTTCGCCCTTGAT
CCTGTGCATCGTAAAGAAGTGAGTGCCTGGATGACCCTCGGTACTTGGCA
GCCAGTTGATGCGGAACTTGGCTAGTCCATTGTCGGATGGCAGTTGCTCC
CAGGAGAAAGATGGCGTGGCAGGGGCCACATTGACGGCATCCTTGAGCGT
GGTCTTTTCGATATAGTGTTCAGATCCCTCGCCCATTTTCGTGGTGGCAG
TGATGGAGATGCGGTACTTGGAGTTGGGCTTCAGGCCGGCCATCTTCATG
CGTGTGACCCTGGGATCGGTGATGTGTGGATCGTATTCGCGTCGCTCGCC
ACATAGCTCTCCTTAACCTCCTCGTA
BS11042.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1634-PA | 3720 | Nrg-RA | 2887..3720 | 850..17 | 4145 | 99.8 | Minus |
| CG1634-PC | 3720 | Nrg-RC | 2887..3720 | 850..17 | 4145 | 99.8 | Minus |
| CG1634-PB | 3909 | Nrg-RB | 2887..3668 | 850..69 | 3910 | 100 | Minus |
| CG1634-PA | 3720 | Nrg-RA | 2860..2887 | 876..849 | 140 | 100 | Minus |
| CG1634-PC | 3720 | Nrg-RC | 2860..2887 | 876..849 | 140 | 100 | Minus |
| CG1634-PB | 3909 | Nrg-RB | 2860..2887 | 876..849 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrg-RH | 5272 | CG1634-RH | 4172..5032 | 876..17 | 4265 | 99.8 | Minus |
| Nrg-RF | 5064 | CG1634-RF | 3132..3992 | 876..17 | 4265 | 99.8 | Minus |
| Nrg-RD | 5059 | CG1634-RD | 3127..3987 | 876..17 | 4265 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8547970..8548357 | 559..172 | 1925 | 99.7 | Minus |
| X | 23542271 | X | 8547738..8547906 | 719..551 | 845 | 100 | Minus |
| X | 23542271 | X | 8547506..8547663 | 876..720 | 740 | 99.4 | Minus |
| X | 23542271 | X | 8548422..8548526 | 173..69 | 525 | 100 | Minus |
| X | 23542271 | X | 8550080..8550135 | 72..17 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:38:58 has no hits.
BS11042.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:57 Download gff for
BS11042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrg-PC | 2861..3720 | 17..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:45 Download gff for
BS11042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1634-PC | 2861..3720 | 17..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:57:06 Download gff for
BS11042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrg-RD | 3128..3990 | 10..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:28:13 Download gff for
BS11042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrg-RD | 3128..3990 | 10..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:28:13 Download gff for
BS11042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8547507..8547663 | 720..875 | 99 | -> | Minus |
| X | 8547738..8547905 | 552..719 | 100 | -> | Minus |
| X | 8547978..8548355 | 174..551 | 100 | -> | Minus |
| X | 8548422..8548525 | 70..173 | 100 | -> | Minus |
| X | 8550083..8550138 | 10..69 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:57:06 Download gff for
BS11042.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8441540..8441696 | 720..875 | 99 | -> | Minus |
| arm_X | 8441771..8441938 | 552..719 | 100 | -> | Minus |
| arm_X | 8442011..8442388 | 174..551 | 100 | -> | Minus |
| arm_X | 8442455..8442558 | 70..173 | 100 | -> | Minus |
| arm_X | 8444116..8444171 | 10..69 | 91 | | Minus |
BS11042.5prime Sequence
880 bp (794 high quality bases) assembled on 2006-04-19
> BS11042.5prime
GAAGTTATCAGTCGACATGTGGCGGCAGTCAACGATACTGGCCGCGTTAC
TAGTGGCTCTTTTGTGTGCGGGCAGTGCAGAAAGCAAAGGCAATCGCCCA
CCAAGAATCACCAAACAACCGGCACCCGGAGAATTGCTCTTCAAAGTGGC
GCAACAGAATAAGGAAAGTGACAATCCATTCATAATCGAGTGCGAAGCCG
ATGGACAACCCGAGCCAGAATATAGTTGGATCAAGAACGGCAAGAAGTTC
GATTGGCAGGCGTACGATAACCGCATGCTGCGGCAGCCAGGACGTGGCAC
CCTGGTGATCACCATACCCAAGGACGAGGATCGCGGCCACTATCAGTGCT
TTGCGTCCAATGAATTCGGAACGGCCACCTCGAACTCAGTATATGTGCGT
AAGGCCGAGCTGAATGCCTTCAAGGATGAGGCGGCCAAGACACTGGAGGC
CGTCGAGGGTGAGCCCTTTATGCTGAAATGTGCCGCACCCGATGGTTTTC
CCAGTCCGACAGTCAACTGGATGATCCAGGAGTCCATCGATGGCAGCATC
AAGTCGATCAACAACTCTCGCATGACCCTCGATCCTGAGGGTAATCTCTG
GTTCTCGAATGTTACCCGTGAGGATGCCAGCTCCGATTTCTACTATGCCT
GCTCGGCCACCTCGGTGTTTCGCAGTGAATACAAGATTGGCAACAAGGTG
CTCCTCGATGTCAAACAGATGGGCGTTAGTGCCTCGCAGAACAAGCATCC
GCCCGTGCGTCAATATGTTTCCCGTCGCCAGTCCTTGGCGTTGCGTGGCA
AGCGAATGGAACTGTTTTGCATCTACGGTGGAACACCGCTGCCGCAGACC
GTGTGGAGCAAGGATGGCCAGCGTATACAG
BS11042.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:00:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1634-PA | 3720 | Nrg-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
| CG1634-PB | 3909 | Nrg-RB | 1..864 | 17..880 | 4320 | 100 | Plus |
| CG1634-PC | 3720 | Nrg-RC | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrg-RI | 5548 | CG1634-RI | 299..1162 | 17..880 | 4320 | 100 | Plus |
| Nrg-RH | 5272 | CG1634-RH | 1313..2176 | 17..880 | 4320 | 100 | Plus |
| Nrg-RG | 5403 | CG1634-RG | 273..1136 | 17..880 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8544850..8545510 | 220..880 | 3305 | 100 | Plus |
| X | 23542271 | X | 8532333..8532464 | 88..219 | 660 | 100 | Plus |
| X | 23542271 | X | 8531947..8532020 | 17..90 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:18:18 has no hits.
BS11042.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:56:58 Download gff for
BS11042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrg-PC | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:46 Download gff for
BS11042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1634-PC | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:38:12 Download gff for
BS11042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrg-RG | 273..1136 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:24 Download gff for
BS11042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrg-RG | 273..1136 | 17..880 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:24 Download gff for
BS11042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8531947..8532019 | 17..89 | 100 | -> | Plus |
| X | 8532335..8532464 | 90..219 | 100 | -> | Plus |
| X | 8544850..8545510 | 220..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:38:12 Download gff for
BS11042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8425980..8426052 | 17..89 | 100 | -> | Plus |
| arm_X | 8426368..8426497 | 90..219 | 100 | -> | Plus |
| arm_X | 8438883..8439543 | 220..880 | 100 | | Plus |
BS11042.pep Sequence
Translation from 16 to 3735
> BS11042.pep
MWRQSTILAALLVALLCAGSAESKGNRPPRITKQPAPGELLFKVAQQNKE
SDNPFIIECEADGQPEPEYSWIKNGKKFDWQAYDNRMLRQPGRGTLVITI
PKDEDRGHYQCFASNEFGTATSNSVYVRKAELNAFKDEAAKTLEAVEGEP
FMLKCAAPDGFPSPTVNWMIQESIDGSIKSINNSRMTLDPEGNLWFSNVT
REDASSDFYYACSATSVFRSEYKIGNKVLLDVKQMGVSASQNKHPPVRQY
VSRRQSLALRGKRMELFCIYGGTPLPQTVWSKDGQRIQWSDRITQGHYGK
SLVIRQTNFDDAGTYTCDVSNGVGNAQSFSIILNVNSVPYFTKEPEIATA
AEDEEVVFECRAAGVPEPKISWIHNGKPIEQSTPNPRRTVTDNTIRIINL
VKGDTGNYGCNATNSLGYVYKDVYLNVQAEPPTISEAPAAVSTVDGRNVT
IKCRVNGSPKPLVKWLRASNWLTGGRYNVQANGDLEIQDVTFSDAGKYTC
YAQNKFGEIQADGSLVVKEHTRITQEPQNYEVAAGQSATFRCNEAHDDTL
EIEIDWWKDGQSIDFEAQPRFVKTNDNSLTIAKTMELDSGEYTCVARTRL
DEATARANLIVQDVPNAPKLTGITCQADKAEIHWEQQGDNRSPILHYTIQ
FNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPS
AHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYY
VSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESN
VAAEEVVGYSGEDRPLDAPTNFTMRQITSSTSGYMAWTPVSEESVRGHFK
GYKIQTWTENEGEEGLREIHVKGDTHNALVTQFKPDSKNYARILAYNGRF
NGPPSAVIDFDTPEGVPSPVQGLDAYPLGSSAFMLHWKKPLYPNGKLTGY
KIYYEEVKESYVGERREYDPHITDPRVTRMKMAGLKPNSKYRISITATTK
MGEGSEHYIEKTTLKDAVNVAPATPSFSWEQLPSDNGLAKFRINWLPSTE
GHPGTHFFTMHRIKGETQWIRENEEKNSDYQEVGGLDPETAYEFRVVSVD
GHFNTESATQEIDTNTVEGPIMVANETVANAGWFIGMMLALAFIIILFII
ICIIRRNRGGKYDVHDRELANGRRDYPEEGGFHEYSQPLDNKSAGRQSVS
SANKPGVESDTDSMAEYGDGDTGMNEDGSFIGQYGRKGL*
BS11042.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrg-PH | 1239 | CG1634-PH | 1..1239 | 1..1239 | 6623 | 100 | Plus |
| Nrg-PF | 1239 | CG1634-PF | 1..1239 | 1..1239 | 6623 | 100 | Plus |
| Nrg-PD | 1239 | CG1634-PD | 1..1239 | 1..1239 | 6623 | 100 | Plus |
| Nrg-PC | 1239 | CG1634-PC | 1..1239 | 1..1239 | 6623 | 100 | Plus |
| Nrg-PA | 1239 | CG1634-PA | 1..1239 | 1..1239 | 6623 | 100 | Plus |
