Clone Sequence Records
BS11044.complete Sequence
4022 bp assembled on 2009-12-07
GenBank Submission: KX800878
> BS11044.complete
GAAGTTATCAGTCGACATGCGTCTCTTCAAAACGCGCAAATCCACGGATA
CCTACAGCACACTAGCCGCGCAGCAACAGCAACAGCAGCAGCAGCAACAA
CAACATCAAGCGGAAGGCAGCAACATTTCCCACAGCAGCAACAGCAGCAG
CAACAAGAGTCACACACCGGCAACATGCAGCAACAGACTGAACAAGAGCA
TTGTGAGCAGCACCAGCATATCGTCATCGCTGCCTGATCTGCATGACAAG
TCGCCCGTCATGATCCTCAGCTGCACCACCCTGGCCAGCAATGGAGCCAC
CGCCACGGCAGCGGTCACAGCAACAGCCACCGGCACAGCAGCAACATCTG
GCGGCTCGCTGCAGCAGCAACAACAGCAGCATCTGCAACACCAGCAGCAG
CAGCAGCCGTTACGCACGGCCACGCCCACGTGTCTGCTGAGTGGCCGTCA
GACGCCATCGGCCATATCGGTGATGTCGCTCCAAGAGGCCACCAGTCTGC
ACCGCCAGCAACAGCAGCCACACCAGCCACCCACCATCTACGTGCCGGTG
CCTACGAAACTTGGCAACAATGTCAACACTGGCAACAGCTCGGCCACTCT
GCTGCTCAGCTATGGCAGCACCAGCAGCATCGCCAACCTGCAACAGCAGC
AGCAGCAGCATGCCGCCCAGTACCAGCAGTATGTTGCACAGCGGCTGCAC
GCCGCTTCCAGCAGTTGTTTGTACGAGAAGGGGTCGAATGCCAGCGGTGG
GGCGAGCAGCAACAAAAGCAGTCTATCCCTGACCCCAAATGGTCACTTGC
CCGACTACAAGTTGGTGACAGCGATGCCAGTTGTTGTCCTGGACGATGAA
CACAAATCCAATTCATTGCCGGCCACTGAAGCGAGTCGCAACAGCAACAG
CAGCAGCAACATGAACGGCAGCAGCAACAGCAACAGCCTTGACGTCAGCA
ACAGCAACTCGCATTCGGGGAGCTCCACTTCTTTGGCCAGCACCACGAGA
AATGTTTTCACCTGGGGCAAGCGCATGAGTCGCAAACTGGATTTGCTGAA
GCGGAGTGACTCGCCCGCCGCCGCCCACAAATCGCATTCGGATTTGAGGA
GTCTGTTCCACTCGCCAACGCACCACAAGAGTGGATCCGGTGGATCCAGC
GGACCCAGTTCGGCGAAGGCATCGGCCTCACCCACTGGCGGCCATCAGAA
CAGCTCCGGCTCCACGACCAGCACCCTCAAGAAGTGCAAGTCGGGGCCCA
TCGAGACCATCAAGCAGCGACACCAGCAGCAGCAGCAGCAGCAGCAATCG
GTTCAGGATGTGGGCACGGGACAGAGCCAGAGTGCTCAGTCCACGCCCAC
GCATCAGTTCCAGGCGGCCGCCCGCCCACAGAAAGCGCTAAAGAACTTCT
TCCATAGGATCGGGTCCACCGGCATGCTGAACCATCGCTCCCACAATCTC
CTTAAGGCTTCGGAGGCGGCTCAACAGGCCACCCCGGCAGCCACCACATT
GTATAGGAGCAGCTCCACTAGCCAGCTGTCCAGCAGCTCCTATGTGAAGT
GCGACGATCCCACCGAGGGACTGAATCTTCAGAGGGAGCAGCGGGAACAG
CGTCTTCCGCGGATCGCCAGCCTGAAGTCCAGTAGCTGCGATGACATAGC
CAAGGTGAGCAGTTGCCTGACGGCCAGCACAAGTAGTGGCAGTGCCGCAG
GCAGCTTGGGCTCTCCTCCAAGTAGTGCAGCAGCTGGTGGAGGCGGAACT
GCAAACAGCGGCCAACACGATCCCTCGCGTCGTGGTGCATTTCCTTACGC
CTTCCTGCGATCACGTCTCTCCGTTTTGCCAGAGGAGAACCACGGAAATG
TACCAGGACACCTGAAGCAACAAATACAGCGGCAACGGGAGCAGCACCAG
CAGCATCAGAGGGATCTCCTCCAGCAGGAGCAGACATCGTCGCCCCTTCC
CCAGCGCCGATCCCCCGAACAGGCGATGCTGAACAATGTGTCACGCAACG
ACAGCATCACCTCCAAGGACTGGGAACCACTTTACCAAAGATTAAGTAGT
TGTCTAAGTTCAAACGAGTCCGGCTACGACAGCGATGGGGGTGCGACGGG
AGCCCGACTGGGCAATAATCTGAGCATCTCCGGCGGAGATACCGAATCTA
TTGCCTCGGGCACACTCAAGCGTAACTCGCTCATCTCCCTCAGCTCCTCG
GAGGGCGTTGGAATGGGCATGGGCATGAGTCTGGGACTGGGTGCCCCATC
GACGAGGAACAGCAGCATCTGCAGTGCTCCCGTGTCGCTGGGTGGCTATA
ACTACGACTATGAGACGGAGACGATACGGCGACGATTCAGGCAGGTTAAG
CTGGAGCGCAAGTGCCAAGAGGACTACATCGGAATTGTCCTGTCGCCCAA
AACGGTGATGACCAATAGCAATGAGCAGCAGTACAGGTATCTCATCGTGG
AACTGGAACCCTATGGCATGGCCCAAAAGGATGGTCGCCTTCGCCTGGGT
GACGAGATCGTCAACGTAAATGGAAAACACCTGCGAGGCATTCAATCCTT
TGCAGAGGTTCAGCGCCTGTTGAGCAGCTTTGTGGACAACTGTATCGACC
TGGTGATTGCTCACGATGAGGTGACGACGGTAACTGATTTCTACACCAAA
ATCCGTATCGATGGGATGAGCACGCAGCGCCATCGGCTGAGTTATGTGCA
ACGCACACAGAGCACAGACAGTCTGAGCAGCATGCAGAGTCTGCAGCTGC
AGCAGGAGAGGATTCAGGGTCACAATACGGAACAGGAGCAGGAGGCCCAG
GGCGAGGATCAGTGCGATGCGCGTTCAATGGCCAGCGTCAGCACAATGCC
CACTCCGATGCCGCTGATGCAGCATCGTCGGAGCTCCACGCCCAGGCACT
CACTGGACGTCGGTGCGCCGGAGCATGAGCTCCTCAGGAGGCGGGCGCGC
AGCTCCTCAGGTCAGCGCAGCTTGGCTCTAACACCGACCCCACTCTTTGC
CAGCGGCAGCAGCAGTTGCTCCTCCTCCCCTAACCACCGGTTGCTGGATA
ACGAGAACGACCCTGCTAACGACACCGATTCCTATACGCCAGTGTATGCA
AATCGGGCGGCAAGCGTGTGCGTGGCCTCCTCCCTGGCGGACGATGAGAA
GTGGCAGTTACTGGCCCGAAAGCGCTGCTCGGAGGGTTCCGCCCTATCCG
CTACACCGAACCCGCAGCAATTTGGCCAGCGCACTCACTACGCCAGAAAC
TCCATCAATCTGGCCAACTCGCATTACCGCTCGCTCCGATTTGCCCACTC
GCGGCTGAGTTCGTCTCGCCTTAGTCTGTTCATGCAGGCACCGCCTAACA
GTCTAACCGTCGGAGAAGGAGTCGCTAACACCCCATCCTCTACAGCTACC
ACAACCACTGATCTCACTAACCAGCAGCAACAGCAGCAAAACCAGCAACA
GACACACCAATCACTGTACATCAAGCACTCGCCAAAGAGCGTCTCATTGT
TCTCGCCTAATCCCTATGTTAACGCCTCATCCTCACCAGCTTCGGCATCC
ACATCAGCGGGTGCCGGCTCCTCCCTGGCACCGCCAGCCGCTGCCCTAAT
GCATCACAGGCCATCGCTTCCGGTGGCCAAGCTAACAATACGCGACGAGG
AAATGGCGGAGGTCATCCGTGCGTCGATGAGCGAGGGTAGTGGACGTTGC
ACCCCGAAGACTATAACCTTCTTTAAGGGACCTGGACTGAAATCGTTGGG
CTTCAGCATAGTGGGAGGTCGAGATTCGCCAAAGGGCAACATGGGAATTT
TTGTAAAGACCGTGTTTCCCTCAGGCCAGGCAGCCGATGATGGCACACTG
CAAGCGGGCGACGAGATTGTAGAGATCAATGGAAACTCTGTGCAGGGCAT
GAGTCATGCCGAAACCATAGGACTCTTTAAGAACGTAAGAGAGGGCACCA
TTGTGCTAAAAATCTTAAGAAGAAAATTACAGAAAGCTAAATCGATGGGT
TGCTAGAAGCTTTCTAGACCAT
BS11044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:23:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
a-RA | 3990 | CG6741-PA | 1..3990 | 17..4006 | 19950 | 100 | Plus |
a-RC | 3990 | CG6741-PC | 1..3990 | 17..4006 | 19950 | 100 | Plus |
a-RB | 3990 | CG6741-PB | 1..3990 | 17..4006 | 19950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
a-RA | 4847 | CG6741-RA | 551..4540 | 17..4006 | 19950 | 100 | Plus |
a-RC | 4665 | CG6741-RC | 369..4358 | 17..4006 | 19950 | 100 | Plus |
a-RB | 5173 | CG6741-RB | 877..4866 | 17..4006 | 19950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22169243..22170718 | 1004..2479 | 7380 | 100 | Plus |
2R | 25286936 | 2R | 22170778..22171987 | 2479..3688 | 6050 | 100 | Plus |
2R | 25286936 | 2R | 22162920..22163696 | 17..793 | 3885 | 100 | Plus |
2R | 25286936 | 2R | 22164776..22164989 | 791..1004 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 22172081..22172253 | 3686..3858 | 865 | 100 | Plus |
2R | 25286936 | 2R | 22172303..22172433 | 3845..3975 | 610 | 97.7 | Plus |
2L | 23513712 | 2L | 14062188..14062238 | 16..66 | 195 | 92.2 | Plus |
Blast to na_te.dros performed 2014-11-28 02:23:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2186..2469 | 131..413 | 218 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2402 | 1866..1933 | 160 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6828 | 3362..3450 | 140 | 64.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2390 | 3415..3487 | 135 | 69.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6900 | 1852..1926 | 132 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6848 | 3370..3490 | 131 | 59.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1048..1161 | 3366..3473 | 130 | 64.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2409 | 3380..3478 | 129 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6820 | 3393..3474 | 127 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2903..2971 | 1836..1905 | 122 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6808 | 3375..3474 | 121 | 62.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6836..6920 | 3393..3478 | 121 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2844 | 3423..3482 | 120 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1591 | 3384..3453 | 118 | 66.7 | Plus |
BS11044.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:11 Download gff for
BS11044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
a-RA | 528..4517 | 17..4006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:03 Download gff for
BS11044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
a-RB | 877..4866 | 17..4006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:09 Download gff for
BS11044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
a-RA | 528..4517 | 17..4006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:24 Download gff for
BS11044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
a-RB | 877..4866 | 17..4006 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:24 Download gff for
BS11044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22172316..22172433 | 3858..3975 | 100 | -> | Plus |
2R | 22172497..22172527 | 3976..4006 | 100 | | Plus |
2R | 22172082..22172252 | 3687..3857 | 100 | -> | Plus |
2R | 22162920..22163694 | 17..791 | 100 | -> | Plus |
2R | 22164777..22164989 | 792..1004 | 100 | -> | Plus |
2R | 22169244..22170717 | 1005..2478 | 100 | -> | Plus |
2R | 22170778..22171985 | 2479..3686 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:03 Download gff for
BS11044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18050425..18051199 | 17..791 | 100 | -> | Plus |
arm_2R | 18052282..18052494 | 792..1004 | 100 | -> | Plus |
arm_2R | 18056749..18058222 | 1005..2478 | 100 | -> | Plus |
arm_2R | 18058283..18059490 | 2479..3686 | 100 | -> | Plus |
arm_2R | 18059587..18059757 | 3687..3857 | 100 | -> | Plus |
arm_2R | 18059821..18059938 | 3858..3975 | 100 | -> | Plus |
arm_2R | 18060002..18060032 | 3976..4006 | 100 | | Plus |
BS11044.3prime Sequence
833 bp (776 high quality bases) assembled on 2006-04-19
> BS11044.3prime
ATGGTCTAGAAAGCTTCTAGCAACCCATCGATTTAGCTTTCTGTAATTTT
CTTCTTAAGATTTTTAGCACAATGGTGCCCTCTCTTACGTTCTTAAAGAG
TCCTATGGTTTCGGCATGACTCATGCCCTGCACAGAGTTTCCATTGATCT
CTACAATCTCGTCGCCCGCTTGCAGTGTGCCATCATCGGCTGCCTGGCCT
GAGGGAAACACGGTCTTTACAAAAATTCCCATGTTGCCCTTTGGCGAATC
TCGACCTCCCACTATGCTGAAGCCCAACGATTTCAGTCCAGGTCCCTTAA
AGAAGGTTATAGTCTTCGGGGTGCAACGTCCACTACCCTCGCTCATCGAC
GCACGGATGACCTCCGCCATTTCCTCGTCGCGTATTGTTAGCTTGGCCAC
CGGAAGCGATGGCCTGTGATGCATTAGGGCAGCGGCTGGCGGTGCCAGGG
AGGAGCCGGCACCCGCTGATGTGGATGCCGAAGCTGGTGAGGATGAGGCG
TTAACATAGGGATTAGGCGAGAACAATGAGACGCTCTTTGGCGAGTGCTT
GATGTACAGTGATTGGTGTGTCTGTTGCTGGTTTTGCTGCTGTTGCTGCT
GGTTAGTGAGATCAGTGGTTGTGGTAGCTGTAGAGGATGGGGTGTTAGCG
ACTCCTTCTCCGACGGTTAGACTGTTAGGCGGTGCCTGCATGAACAGACT
AAGGCGAGACGAACTCAGCCGCGAGTGGGCAAATCGGAGCGAGCGGTAAT
GCGAGTTGGCCAGATTGATGGAGTTTCTGGCGTAGTGAGTGCGCTGGCCA
AATTGCTGCGGGTTCGGTGTAGCGGATAGGGCG
BS11044.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6741-PB | 3990 | a-RB | 3174..3990 | 833..17 | 4085 | 100 | Minus |
CG6741-PC | 3990 | a-RC | 3174..3990 | 833..17 | 4085 | 100 | Minus |
CG6741-PA | 3990 | a-RA | 3174..3990 | 833..17 | 4085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
a-RA | 4847 | CG6741-RA | 3724..4540 | 833..17 | 4085 | 100 | Minus |
a-RC | 4665 | CG6741-RC | 3542..4358 | 833..17 | 4085 | 100 | Minus |
a-RB | 5173 | CG6741-RB | 4050..4866 | 833..17 | 4085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22171489..22171987 | 833..335 | 2495 | 100 | Minus |
2R | 25286936 | 2R | 22172081..22172253 | 337..165 | 865 | 100 | Minus |
2R | 25286936 | 2R | 22172303..22172433 | 178..48 | 610 | 97.7 | Minus |
Blast to na_te.dros performed 2015-02-12 18:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6828 | 661..573 | 140 | 64.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2390 | 608..536 | 135 | 69.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6848 | 653..533 | 131 | 59.5 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1048..1161 | 657..550 | 130 | 64.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2409 | 643..545 | 129 | 65.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6820 | 630..549 | 127 | 66.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6808 | 648..549 | 121 | 62.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6836..6920 | 630..545 | 121 | 63.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2844 | 600..541 | 120 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1591 | 639..570 | 118 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6787 | 603..549 | 117 | 73.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6871 | 603..563 | 115 | 75.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5638..5695 | 612..558 | 112 | 69 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6756 | 603..564 | 112 | 80 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1029..1151 | 660..545 | 112 | 58.5 | Minus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3203..3323 | 677..563 | 112 | 59.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2407 | 605..573 | 111 | 81.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2371..2410 | 603..564 | 110 | 75 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2638..2696 | 603..547 | 110 | 67.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1125..1158 | 603..569 | 109 | 82.9 | Minus |
BS11044.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:01 Download gff for
BS11044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6741-PA | 3174..3990 | 17..833 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:50 Download gff for
BS11044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6741-PA | 3174..3990 | 17..833 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:22:13 Download gff for
BS11044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
a-RB | 4050..4870 | 12..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:24:38 Download gff for
BS11044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
a-RB | 4050..4870 | 12..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:24:38 Download gff for
BS11044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22171489..22171985 | 337..833 | 100 | -> | Minus |
2R | 22172082..22172252 | 166..336 | 100 | -> | Minus |
2R | 22172316..22172433 | 48..165 | 100 | -> | Minus |
2R | 22172497..22172531 | 12..47 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:22:13 Download gff for
BS11044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18058994..18059490 | 337..833 | 100 | -> | Minus |
arm_2R | 18059587..18059757 | 166..336 | 100 | -> | Minus |
arm_2R | 18059821..18059938 | 48..165 | 100 | -> | Minus |
arm_2R | 18060002..18060036 | 12..47 | 94 | | Minus |
BS11044.5prime Sequence
917 bp (797 high quality bases) assembled on 2006-04-19
> BS11044.5prime
GAAGTTATCAGTCGACATGCGTCTCTTCAAAACGCGCAAATCCACGGATA
CCTACAGCACACTAGCCGCGCAGCAACAGCAACAGCAGCAGCAGCAACAA
CAACATCAAGCGGAAGGCAGCAACATTTCCCACAGCAGCAACAGCAGCAG
CAACAAGAGTCACACACCGGCAACATGCAGCAACAGACTGAACAAGAGCA
TTGTGAGCAGCACCAGCATATCGTCATCGCTGCCTGATCTGCATGACAAG
TCGCCCGTCATGATCCTCAGCTGCACCACCCTGGCCAGCAATGGAGCCAC
CGCCACGGCAGCGGTCACAGCAACAGCCACCGGCACAGCAGCAACATCTG
GCGGCTCGCTGCAGCAGCAACAACAGCAGCATCTGCAACACCAGCAGCAG
CAGCAGCCGTTACGCACGGCCACGCCCACGTGTCTGCTGAGTGGCCGTCA
GACGCCATCGGCCATATCGGTGATGTCGCTCCAAGAGGCCACCAGTCTGC
ACCGCCAGCAACAGCAGCCACACCAGCCACCCACCATCTACGTGCCGGTG
CCTACGAAACTTGGCAACAATGTCAACACTGGCAACAGCTCGGCCACTCT
GCTGCTCAGCTATGGCAGCACCAGCAGCATCGCCAACCTGCAACAGCAGC
AGCAGCAGCATGCCGCCCAGTACCAGCAGTATGTTGCACAGCGGCTGCAC
GCCGCTTCCAGCAGTTGTTTGTACGAGAAGGGGTCGAATGCCAGCGGTGG
GGCGAGCAGCAACAAAAGCAGTCTATCCCTGACCCCAAATGGTCACTTGC
CCGACTACAAGTTGGTGACAGCGATGCCAGTTGTTGTCCTGGACGATGAA
CACAAATCAATTCATTGCCGGCCACTGAAGCGAGTCGCAACAGCAACAGC
AGCAGCAACATGAACGG
BS11044.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6741-PB | 3990 | a-RB | 1..842 | 17..858 | 4210 | 100 | Plus |
CG6741-PC | 3990 | a-RC | 1..842 | 17..858 | 4210 | 100 | Plus |
CG6741-PA | 3990 | a-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
CG6741-PB | 3990 | a-RB | 843..902 | 858..917 | 300 | 100 | Plus |
CG6741-PC | 3990 | a-RC | 843..902 | 858..917 | 300 | 100 | Plus |
CG6741-PA | 3990 | a-RA | 843..902 | 858..917 | 300 | 100 | Plus |
CG32975-PA | 1713 | nAcRalpha-34E-RA | 492..529 | 25..62 | 165 | 97.3 | Plus |
CG32975-PC | 2361 | nAcRalpha-34E-RC | 492..529 | 25..62 | 165 | 97.3 | Plus |
CG32975-PB | 2427 | nAcRalpha-34E-RB | 492..529 | 25..62 | 165 | 97.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
a-RD | 3897 | CG6741-RD | 327..1228 | 17..917 | 4485 | 99.9 | Plus |
a-RA | 4847 | CG6741-RA | 551..1452 | 17..917 | 4485 | 99.9 | Plus |
a-RC | 4665 | CG6741-RC | 369..1270 | 17..917 | 4485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22162920..22163696 | 17..793 | 3885 | 100 | Plus |
2R | 25286936 | 2R | 22164776..22164903 | 791..917 | 590 | 99.2 | Plus |
2L | 23513712 | 2L | 14062188..14062238 | 16..66 | 195 | 92.2 | Plus |
Blast to na_te.dros performed 2015-02-10 20:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2186..2469 | 131..413 | 218 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6437..6569 | 552..677 | 205 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2268..2459 | 520..714 | 174 | 58.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1111..1155 | 871..916 | 119 | 76.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2406 | 869..915 | 115 | 74.5 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3284..3311 | 887..914 | 113 | 89.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2340 | 867..915 | 112 | 72 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2402 | 883..917 | 112 | 80 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6752 | 887..915 | 109 | 86.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6765 | 869..910 | 108 | 76.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6861 | 869..910 | 108 | 76.2 | Plus |
BS11044.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:02 Download gff for
BS11044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6741-PA | 1..902 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:51 Download gff for
BS11044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6741-PA | 1..902 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:01:34 Download gff for
BS11044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
a-RC | 363..1270 | 9..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:26:12 Download gff for
BS11044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
a-RC | 363..1270 | 9..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:26:12 Download gff for
BS11044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22162914..22163694 | 9..791 | 99 | -> | Plus |
2R | 22164777..22164903 | 792..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:01:34 Download gff for
BS11044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18050419..18051199 | 9..791 | 99 | -> | Plus |
arm_2R | 18052282..18052408 | 792..917 | 99 | | Plus |
BS11044.pep Sequence
Translation from 16 to 4005
> BS11044.pep
MRLFKTRKSTDTYSTLAAQQQQQQQQQQQHQAEGSNISHSSNSSSNKSHT
PATCSNRLNKSIVSSTSISSSLPDLHDKSPVMILSCTTLASNGATATAAV
TATATGTAATSGGSLQQQQQQHLQHQQQQQPLRTATPTCLLSGRQTPSAI
SVMSLQEATSLHRQQQQPHQPPTIYVPVPTKLGNNVNTGNSSATLLLSYG
STSSIANLQQQQQQHAAQYQQYVAQRLHAASSSCLYEKGSNASGGASSNK
SSLSLTPNGHLPDYKLVTAMPVVVLDDEHKSNSLPATEASRNSNSSSNMN
GSSNSNSLDVSNSNSHSGSSTSLASTTRNVFTWGKRMSRKLDLLKRSDSP
AAAHKSHSDLRSLFHSPTHHKSGSGGSSGPSSAKASASPTGGHQNSSGST
TSTLKKCKSGPIETIKQRHQQQQQQQQSVQDVGTGQSQSAQSTPTHQFQA
AARPQKALKNFFHRIGSTGMLNHRSHNLLKASEAAQQATPAATTLYRSSS
TSQLSSSSYVKCDDPTEGLNLQREQREQRLPRIASLKSSSCDDIAKVSSC
LTASTSSGSAAGSLGSPPSSAAAGGGGTANSGQHDPSRRGAFPYAFLRSR
LSVLPEENHGNVPGHLKQQIQRQREQHQQHQRDLLQQEQTSSPLPQRRSP
EQAMLNNVSRNDSITSKDWEPLYQRLSSCLSSNESGYDSDGGATGARLGN
NLSISGGDTESIASGTLKRNSLISLSSSEGVGMGMGMSLGLGAPSTRNSS
ICSAPVSLGGYNYDYETETIRRRFRQVKLERKCQEDYIGIVLSPKTVMTN
SNEQQYRYLIVELEPYGMAQKDGRLRLGDEIVNVNGKHLRGIQSFAEVQR
LLSSFVDNCIDLVIAHDEVTTVTDFYTKIRIDGMSTQRHRLSYVQRTQST
DSLSSMQSLQLQQERIQGHNTEQEQEAQGEDQCDARSMASVSTMPTPMPL
MQHRRSSTPRHSLDVGAPEHELLRRRARSSSGQRSLALTPTPLFASGSSS
CSSSPNHRLLDNENDPANDTDSYTPVYANRAASVCVASSLADDEKWQLLA
RKRCSEGSALSATPNPQQFGQRTHYARNSINLANSHYRSLRFAHSRLSSS
RLSLFMQAPPNSLTVGEGVANTPSSTATTTTDLTNQQQQQQNQQQTHQSL
YIKHSPKSVSLFSPNPYVNASSSPASASTSAGAGSSLAPPAAALMHHRPS
LPVAKLTIRDEEMAEVIRASMSEGSGRCTPKTITFFKGPGLKSLGFSIVG
GRDSPKGNMGIFVKTVFPSGQAADDGTLQAGDEIVEINGNSVQGMSHAET
IGLFKNVREGTIVLKILRRKLQKAKSMGC*
BS11044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
a-PA | 1329 | CG6741-PA | 1..1329 | 1..1329 | 6757 | 100 | Plus |
a-PC | 1329 | CG6741-PC | 1..1329 | 1..1329 | 6757 | 100 | Plus |
a-PB | 1329 | CG6741-PB | 1..1329 | 1..1329 | 6757 | 100 | Plus |
a-PD | 1087 | CG6741-PD | 1..982 | 1..982 | 4988 | 100 | Plus |
a-PD | 1087 | CG6741-PD | 870..1087 | 1128..1329 | 577 | 59.4 | Plus |
Spt20-PC | 1646 | CG17689-PC | 1094..1634 | 19..578 | 216 | 23.5 | Plus |