Clone Sequence Records
BS11047.complete Sequence
5705 bp assembled on 2009-12-07
GenBank Submission: KX804043
> BS11047.complete
GAAGTTATCAGTCGACATGGAAACTGGACCGAATGCAGAAATTGAGCTTC
TGGAGCGCGTCCTGTTGCGTCTGGGAAATGCGGACTCGGATGAGAAGCTG
GAAGCCGCTGTGGGCAAGTTCCTGACCCCGGTGATCCTCAAAATGAACTC
GCCCCACAATGTGGTGCGCACAAAGGTCGTAGAAGTGCTCACCCATATCA
AGAGGCGCCTGTCGTCGCGCGGACATGTGCAAATACCCGTAGAGGCACTG
CTGGATCAGTATGCCGCCCAGGATAGCAGCACCTTCCTCAAGAACTTCGC
CATCATATTCATTACCATGGGCTTTCCGCGCCTGGCGTTGGAACAACAGA
CTGCGCTGGCCAGCAAAGTGGTGGGCTGCGAGGACAAGCTGGAGAGCTAC
CAGGACAAGCTGTTCGCCCTGCTGCTGCCCGTACTGTCGGACATGAAGAT
TCCCGACGACCCGACGCAGCGCTCAAAGCTACTTGATCTGCAGGACAAGC
CAGCCATCTGTGCAAACTTTTTGGCACTGCTCCAGGATGTGCTCCTCCTG
CCCTATGGCATCACCCAGGAACAGGATGTGCCTCCGGGTCTGAGCCCGTA
CAGTTTTACACGCATCATCGCCTACAATTGGCGGGCCGAAGAACTGGAAA
AGGTCAAGAAGGGAATAGTTCGTTTCCTGTGCGCCAGTGTGTTTAGTGAT
TTGCAGATATTCGTGCCACTGGTGGTGGCTTCCGCGGACACACGTTTCAG
CGTAGCCACTCCAGCAATCACAGAGCTGAGCAAGCTCTGTACAATGCTGG
ATTTCAGCAACCCAGCGGTGACTGCCCCGTTGTACACTCTGTTCGCTGGC
AACCAAAGCAAGATAACTGACCGCCAGACACGTCCCTGCTGCGCCCGAGT
GCGCCAAAAATTGCTGCAGTACCTCATCAAGTGCCGTGGCAAAAGCATTA
ACGTCACCAAGGGCTTGCAGGTGACCTTTGATGGCTTCTTTGGCACAAAC
ACCAACCAGAAGTGCAAGGTCCTAGCGCTACAGTTTATGGAACTGCTCCT
CAGAGATGGTCCCCGCGAGCTGGTCTCGAAGGTTTCCAAGGTAATACTTA
CCGGCATCACCAAAATCATTGGACGTGACTCCAACGAACCGAACGATGTA
CAAAATGCAGCATATTCCGCTTTGGCGCAACACGCTCGCAGTTTTCCGCA
AGACGTAAGCCAGGATCTGAAACTAGTCCTTGGATACTTCAACAACCTGG
CCAGCTGTGCACCAGAATTGCATTCATCCATAAGGGAAGCATTGGTTTCG
ATGGCTCCCGCATTCGCTTGGAAGACCAAGGAGAAGAGCGATGCAATGGA
GGTGGATAAGAATGTCGATTCCTCAAGCGTGAAACTGGATGGCCAACAGC
ACCTGCTATTGGCCATGCTGCTGGACAATGCTGAGTCCAAAGTGCAGATC
GTGCAGAATGTGACCAGTGTTTTCCTCACCAGCTGCTATCCGGAGTACTA
TGCACCAGCCAGATACCTTTTGCTACTCATCGCAGGAGAGCGAAATTCCC
TACGCGAGAATGTGACCACTTACTTGTACGGCACCTCGAAGAAGGATCAC
ATAAATTACAGCATGCTCTCTTCCATCGATCATTCTAAGAACCGCATAAG
CAGCGAGTCTATAAGTGACTTTAATCACTTGTCCCTGGAGCAGCGTAGGG
TTATGCTACCCAGCTTCCAGGTGATGATGTCGCACGTCCATGAGATGGCC
GAAAAACGCCTAAAAAAGAACACGGCCTGCGTGGTAGTTGGCCGTACAAA
GCTGCCCTACAGCCTGGAGGTATACGAGGAGCTTCTAGATTATCTGCGTC
TGTGCTTGTGGTACTCGGCTGGAGTGGTTGCCGCTCCCGGCGACGAGAAG
TACACCCATGAGCTGCGCGAGTACATCACCTTGCATTACGAAGATACGGA
GGATAATGCACTCCATCAATATGCGCAGTTTGTGCAGCGAAGCGTAGAGG
CCAAGAGAAGTGAATCCAATCTCATTTGCCTATATGATCTGTTGAATGCC
GCTCCGGAACTCTTTGCTGCTAAGCAGCTGCATTTGCTGGAACCACTGGG
CAACACTTTGAAAGATGTATCGGAGACTATGCGTATCAACGTGGCTCAAG
TCTATGGTATTCTCTGGGCTTTTGGTCTCTCCGATGAGAAATTCGATGAA
GAAGTGGGTGAATGCCTGAATAGCTTAACGCAAAAAACATTGGAGCACAA
GCATGGATGGCTTCTCGTGGTGGGTCACACGTTCAATCGCAAAATTGCTA
TGCTTAAGCAGGAGAATAAGACCAAGGACTTTGCTGCCTGGCCGCAGTTT
GTTAATGCGGTAAAAATAATCTCAAAATGCCTCTGTGAATCCCAATGGTT
GCTGGTGTCAGCAGCAGTGAAATGCATCTCTATGATCGGCAAGGCTGTGG
AAATACCAAATGTCCCCGTGGAGATCCAGGTTCCATCCAAAGATGGAGAC
GACGACGACGAGGAGATGACCGAGTATACGAGCATAGATTCCTCGACAAA
ACTTGTTATCTTTGGCGTCGTCTTTCAATTACTGCGAAGCTCCTCAGCGC
GTCAAAAGATTCGCGAGGACTCAGCCAGATGTCTCGGATATCTGGCCATT
GGCGACGGCGAACACTTCACCAAACGCAACCTGGATAAGTTTCTTACCCT
GACCAAGATTCAAAAGGATGCTGCTCTAAACATAGCCATTTCGGAAGCGA
TCGTAAACACACTTTGTGGCTATGATGTGAACAAGGGGCAACCCGATGAG
AAGTTTGTTAATAAGCACTGCAACGATGACGACTTTGATCAGTTCCTGAA
CTCTCTAATACGTCTGGTCACCGATCCCAATCCGCATTCCCGTCAGGCCA
TATCCGTGTGGCTTCTAGCTGTGGTAAAGCACTGCAGCCAACGTCCAGCT
GTATTGGCCAAAAAAGAGCTGTTGCAGTTCGCTTTTACCGAACTTCTTTC
AGATGACAGCGAGTTTGTTCAGGACGTGGCTTCTCGCGGCCTGGGGCTGG
TCTACTCGATATCGGATTCTGGAAGCCAAAGTGATTTGGCAAACTCGCTG
TTGGATCAACTGATTGGGGGAAAACGAAAGGTCAATCAAGTAACCGCAGA
CACTGAACTCTTTGCCGAAGGAATGCTGGGTAAAACTCCAACGGGAGGCA
ACATTACCACCTACAAGGAGCTGTGTTCCCTGGCATCCGATCTCAATCAG
CCGGACATGATCTATCAGTTCATGCAGCTGGCCAATCATAATGCCACATG
GACCAGCAAACTGGGTGCTGCTTTCGGATTGAAAACCCTTTCTGCCGAGT
CAAGGCAGAAGATGGAGCCATATCTGGGCAAGATCATTCCGCGCCTCTAT
CGGTACAAGTACGATCCCACACCCAAGATTCAGAACTCGATGATCTCCAT
TTGGGATACGATTGTGACTGACTCGAAGGAAGTGACCGAGCGTTACTACT
GGGAAATATTACGCGAGCTGCTGGACAATCTCACTTGCAAGGAGTGGCGA
GTGCGAATCGCCTGCTGCCTGGCAGTAAGGGATCTCCTAAACCGACCCAA
CGGGCTTAAGCTACGCTCGGAGGAGCCGGTTCGTCGTGCTCTCCCCGATA
ACAGTATGGAAGTGGATGAGGTCCCTGAGCCGGAGCTGAAAGAGCTATGG
TTCCAGCTGTTTCGTGTGATGGATGACATTCATGAGGGCACACGGGTCGC
TGCCCACGGAACTGCTTCATTCCTCGGCAAGCTGTGTGTCATCGCATCGT
CATCGGATCATGGCAAATCCGGGACAGCCGTAGCGTCATCGATACTGCCA
TTTCTGCTAGAAACCGGAGTGGGTCACAAAGTGCCCGAGATACGTAGAGT
TAGCATTAAGACCATTTCCGACATGATTGATTCCTCGGGATCGCTTATTG
CCCCGCATCTCGCCACCCTGATTCCCTGCCTGCTACGAGCCACTGGCGAG
TTGGAGAACACCAAGCTCTCCTACGTATCCACTCGCTTGGGTGCGGACAA
CGAGGCCCAGGAGGCGGTGGATACGCTACGAGCGGAGGCCGCCAAGTCGC
TTCATACCATGGAAACCATTGGGAAGTGTGTCCGTTATATCGACTATAGC
GTTTTGGAGAAGATGACGCCCGAAGTGCTGGAGCTCATGAAGGGTAGTGT
CAACCTCGGAACCAAGATTGGCTGTGCCCATTTTGTTTGTCTGATTAGCA
TTCGCTTAGGCAAGGAGATGACACCATTGGTGGGAAAATACATTCGTGCC
TGCTTTGTGGGCATCAAGAATCGCAACGCCACTGTGCGCAAGTACAACGC
CAGTGCCATTGGCCACCTGTTGGGCTTGGCCAAAGAGCAGTCGATTAAAA
GTCTATTCACTAAGCTGGAAGAGTTATATGCCGAGCAGCCAGGAAATCGC
TCCATTGCACTTACCATTCAGTCCATTAACAAGCGTCACCATGAACTGCT
CAAGGACTACATGGACAGTATGTTGCCGCTGATCTTCTTTGCCATGCACG
AAGAGCCCAATGAAGAGACGAAAGCTAATGTCGAGCTGTGGAAGGATCTA
TGGCACGACGTTAGCCCAGGTGACGCGGGCATCCGTCTCAATTTAAATGT
GATTATACCCAAACTGGAGTCATCTCTAACCGATGCCAGCTGGTCGCGTA
AAGCTCAGGCAGCGAATGCGATCCAAACGATAGCCACTCGCCTAAGTAGC
TCCTTGGATGAGCCCGACCGATTGAGGCTGATCAAACTCCTTCTAAGCGG
TCTGCAAGGACGCACTTTTGAGGGCAAAGAGCGGCTATTGCAAGCTTTGG
CCGCACTCACCAAAGGATTGGATCGGAACCATCAAATCTGTTCCAGCATT
ATCGACGCGGCCATGAGGGAAGCAAGAAAGAGGGAACCTGTTTACCGCAC
CATGGCCCTGGCTTCTCTTGGCGAAATTCTCGATCAACTGGAAGCGGATC
GCTTTGAGGAAGTGTACAACATGAGCTGGAACCTGCTGGAAAAGAAGGAA
CTGCGCAAGGAGTCGGACGACGAGGACGAGCCCAACACCAGTCAGGAACT
GTCTGCCGACGAGCGCAACAAGCGGGCTCAAACACTCAATCGACTAAAGG
AGGTTGTGTGGGAGACACTGGGCAAATCCTGGCCGCGTCACTCCATCGAG
ACGCAGCACCGCTACCAACTCTTCTTTGCCGAAAACTGTACGAGCATTCT
GGCGGAGAGCACTCGCCCAGTGCAAGTCAGTCTGCTGGCAGCACTCACTA
AGTACATCGAAAGACTTCATGTCTTTGATGAGTCTGCTCAAGTGCCGGAT
TTGACTCAGATAAACCAGGAGAAGAAGATCAAGACAGAGGAGACGGCGCC
AAAAACCCGAGAGGCCATTGTCGAGAAGATATGCACAGATGTTTTGGCTG
CAGTTGCTCTTGCCGCTGGAGTTCCTCATTCCGGTTTGAAAAAGGAGGCG
CTCAACATCGTTCTTATGCTGATCAAGCGGCTGAGCGGAAGCGGAAACGG
AAACCAGCAGCCACTGAGGTTGATCAAGCAGAGCTTTGAATCGAATTTGG
AAAAGTTCCAGCGCGATTCGGCGCCGGAAATCCGGTGTCGCATCAAGGAC
ATCGAAGACAAGCTAAGCAAGTTGAATCCACAGAATTAAAAGCTTTCTAG
ACCAT
BS11047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8858-RA | 5673 | CG8858-PA | 1..5673 | 17..5689 | 28365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8858-RA | 5896 | CG8858-RA | 25..5697 | 17..5689 | 28365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12192573..12194019 | 5689..4243 | 7235 | 100 | Minus |
| 2R | 25286936 | 2R | 12194073..12195305 | 4243..3011 | 6165 | 100 | Minus |
| 2R | 25286936 | 2R | 12197560..12198442 | 1056..174 | 4415 | 100 | Minus |
| 2R | 25286936 | 2R | 12195370..12196008 | 3011..2373 | 3195 | 100 | Minus |
| 2R | 25286936 | 2R | 12197019..12197504 | 1542..1057 | 2430 | 100 | Minus |
| 2R | 25286936 | 2R | 12196488..12196957 | 2011..1542 | 2350 | 100 | Minus |
| 2R | 25286936 | 2R | 12196074..12196436 | 2372..2010 | 1815 | 100 | Minus |
| 2R | 25286936 | 2R | 12198546..12198678 | 176..44 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:28:56 has no hits.
BS11047.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:32 Download gff for
BS11047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8858-RA | 9..5679 | 17..5687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:16 Download gff for
BS11047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8858-RA | 25..5695 | 17..5687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:10 Download gff for
BS11047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8858-RA | 9..5679 | 17..5687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:26 Download gff for
BS11047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8858-RA | 25..5695 | 17..5687 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:26 Download gff for
BS11047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12192575..12194018 | 4244..5687 | 100 | <- | Minus |
| 2R | 12194073..12195304 | 3012..4243 | 100 | <- | Minus |
| 2R | 12198803..12198830 | 17..44 | 100 | | Minus |
| 2R | 12195370..12196008 | 2373..3011 | 100 | <- | Minus |
| 2R | 12196074..12196436 | 2010..2372 | 100 | <- | Minus |
| 2R | 12196490..12196956 | 1543..2009 | 100 | <- | Minus |
| 2R | 12197019..12197504 | 1057..1542 | 100 | <- | Minus |
| 2R | 12197560..12198440 | 176..1056 | 100 | <- | Minus |
| 2R | 12198547..12198677 | 45..175 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:16 Download gff for
BS11047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8080080..8081523 | 4244..5687 | 100 | <- | Minus |
| arm_2R | 8081578..8082809 | 3012..4243 | 100 | <- | Minus |
| arm_2R | 8082875..8083513 | 2373..3011 | 100 | <- | Minus |
| arm_2R | 8083579..8083941 | 2010..2372 | 100 | <- | Minus |
| arm_2R | 8083995..8084461 | 1543..2009 | 100 | <- | Minus |
| arm_2R | 8084524..8085009 | 1057..1542 | 100 | <- | Minus |
| arm_2R | 8085065..8085945 | 176..1056 | 100 | <- | Minus |
| arm_2R | 8086052..8086182 | 45..175 | 100 | <- | Minus |
| arm_2R | 8086308..8086335 | 17..44 | 100 | | Minus |
BS11047.3prime Sequence
900 bp (739 high quality bases) assembled on 2006-04-19
> BS11047.3prime
ATGGTCTAGAAAGCTTTTAATTCTGTGGATTCAACTTGCTTAGCTTGTCT
TCGATGTCCTTGATGCGACACCGGATTTCCGGCGCCGAATCGCGCTGGAA
CTTTTCCAAATTCGATTCAAAGCTCTGCTTGATCAACCTCAGTGGCTGCT
GGTTTCCGTTTCCGCTTCCGCTCAGCCGCTTGATCAGCATAAGAACGATG
TTGAGCGCCTCCTTTTTCAAACCGGAATGAGGAACTCCAGCGGCAAGAGC
AACTGCAGCCAAAACATCTGTGCATATCTTCTCGACAATGGCCTCTCGGG
TTTTTGGCGCCGTCTCCTCTGTCTTGATCTTCTTCTCCTGGTTTATCTGA
GTCAAATCCGGCACTTGAGCAGACTCATCAAAGACATGAAGTCTTTCGAT
GTACTTAGTGAGTGCTGCCAGCAGACTGACTTGCACTGGGCGAGTGCTCT
CCGCCAGAATGCTCGTACAGTTTTCGGCAAAGAAGAGTTGGTAGCGGTGC
TGCGTCTCGATGGAGTGACGCGGCCAGGATTTGCCCAGTGTCTCCCACAC
AACCTCCTTTAGTCGATTGAGTGTTTGAGCCCGCTTGTTGCGCTCGTCGG
CAGACAGTTCCTGACTGGTGTTGGGCTCGTCCTCGTCGTCCGACTCCTTG
CGCAGTTCCTTCTTTTCCAGCAGGTTCCAGCTCATGTTGTACACTTCCTC
AAAGCGATCCGCTTCCAGTTGATCGAGAATTTCGCCAAGAGAAGCCAGGG
CCATGGTGCGGTAAACAGGTTCCCTCTTTCTTGCTTCCCTCATGGCCGCG
TCGATAATGCTGGAACAGATTTGATGGTTCCGATCCAATCCTTTGGTGAG
TGCGGGCAAAGCTTGCAATAGCCGCTCTTTGCCCTCAAAAGTGCGTCCTT
BS11047.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8858-PA | 5673 | CG8858-RA | 4790..5673 | 900..17 | 4395 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8858-RA | 5896 | CG8858-RA | 4814..5697 | 900..17 | 4405 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12192573..12193456 | 17..900 | 4405 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:18:43 has no hits.
BS11047.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:06 Download gff for
BS11047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8858-PA | 4790..5673 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:54 Download gff for
BS11047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8858-PA | 4790..5673 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:36:37 Download gff for
BS11047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8858-RA | 4814..5697 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:07:33 Download gff for
BS11047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8858-RA | 4814..5697 | 17..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:07:33 Download gff for
BS11047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12192573..12193456 | 17..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:36:37 Download gff for
BS11047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8080078..8080961 | 17..900 | 99 | | Plus |
BS11047.5prime Sequence
796 bp (795 high quality bases) assembled on 2006-04-19
> BS11047.5prime
GAAGTTATCAGTCGACATGGAAACTGGACCGAATGCAGAAATTGAGCTTC
TGGAGCGCGTCCTGTTGCGTCTGGGAAATGCGGACTCGGATGAGAAGCTG
GAAGCCGCTGTGGGCAAGTTCCTGACCCCGGTGATCCTCAAAATGAACTC
GCCCCACAATGTGGTGCGCACAAAGGTCGTAGAAGTGCTCACCCATATCA
AGAGGCGCCTGTCGTCGCGCGGACATGTGCAAATACCCGTAGAGGCACTG
CTGGATCAGTATGCCGCCCAGGATAGCAGCACCTTCCTCAAGAACTTCGC
CATCATATTCATTACCATGGGCTTTCCGCGCCTGGCGTTGGAACAACAGA
CTGCGCTGGCCAGCAAAGTGGTGGGCTGCGAGGACAAGCTGGAGAGCTAC
CAGGACAAGCTGTTCGCCCTGCTGCTGCCCGTACTGTCGGACATGAAGAT
TCCCGACGACCCGACGCAGCGCTCAAAGCTACTTGATCTGCAGGACAAGC
CAGCCATCTGTGCAAACTTTTTGGCACTGCTCCAGGATGTGCTCCTCCTG
CCCTATGGCATCACCCAGGAACAGGATGTGCCTCCGGGTCTGAGCCCGTA
CAGTTTTACACGCATCATCGCCTACAATTGGCGGGCCGAAGAACTGGAAA
AGGTCAAGAAGGGAATAGTTCGTTTCCTGTGCGCCAGTGTGTTTAGTGAT
TTGCAGATATTCGTGCCACTGGTGGTGGCTTCCGCGGACACACGTTTCAG
CGTAGCCACTCCAGCAATCACAGAGCTGAGCAAGCTCTGTACAATG
BS11047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8858-PA | 5673 | CG8858-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8858-RA | 5896 | CG8858-RA | 25..804 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12197820..12198442 | 796..174 | 3115 | 100 | Minus |
| 2R | 25286936 | 2R | 12198546..12198678 | 176..44 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:22:58 has no hits.
BS11047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:07 Download gff for
BS11047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8858-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:55 Download gff for
BS11047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8858-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:05:08 Download gff for
BS11047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8858-RA | 25..804 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:41 Download gff for
BS11047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8858-RA | 25..804 | 17..796 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:41 Download gff for
BS11047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12198547..12198677 | 45..175 | 100 | <- | Minus |
| 2R | 12198803..12198828 | 19..44 | 100 | <- | Minus |
| 2R | 12197820..12198440 | 176..796 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:05:08 Download gff for
BS11047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8085325..8085945 | 176..796 | 100 | <- | Minus |
| arm_2R | 8086052..8086182 | 45..175 | 100 | <- | Minus |
| arm_2R | 8086308..8086333 | 19..44 | 100 | <- | Minus |
BS11047.pep Sequence
Translation from 16 to 5688
> BS11047.pep
METGPNAEIELLERVLLRLGNADSDEKLEAAVGKFLTPVILKMNSPHNVV
RTKVVEVLTHIKRRLSSRGHVQIPVEALLDQYAAQDSSTFLKNFAIIFIT
MGFPRLALEQQTALASKVVGCEDKLESYQDKLFALLLPVLSDMKIPDDPT
QRSKLLDLQDKPAICANFLALLQDVLLLPYGITQEQDVPPGLSPYSFTRI
IAYNWRAEELEKVKKGIVRFLCASVFSDLQIFVPLVVASADTRFSVATPA
ITELSKLCTMLDFSNPAVTAPLYTLFAGNQSKITDRQTRPCCARVRQKLL
QYLIKCRGKSINVTKGLQVTFDGFFGTNTNQKCKVLALQFMELLLRDGPR
ELVSKVSKVILTGITKIIGRDSNEPNDVQNAAYSALAQHARSFPQDVSQD
LKLVLGYFNNLASCAPELHSSIREALVSMAPAFAWKTKEKSDAMEVDKNV
DSSSVKLDGQQHLLLAMLLDNAESKVQIVQNVTSVFLTSCYPEYYAPARY
LLLLIAGERNSLRENVTTYLYGTSKKDHINYSMLSSIDHSKNRISSESIS
DFNHLSLEQRRVMLPSFQVMMSHVHEMAEKRLKKNTACVVVGRTKLPYSL
EVYEELLDYLRLCLWYSAGVVAAPGDEKYTHELREYITLHYEDTEDNALH
QYAQFVQRSVEAKRSESNLICLYDLLNAAPELFAAKQLHLLEPLGNTLKD
VSETMRINVAQVYGILWAFGLSDEKFDEEVGECLNSLTQKTLEHKHGWLL
VVGHTFNRKIAMLKQENKTKDFAAWPQFVNAVKIISKCLCESQWLLVSAA
VKCISMIGKAVEIPNVPVEIQVPSKDGDDDDEEMTEYTSIDSSTKLVIFG
VVFQLLRSSSARQKIREDSARCLGYLAIGDGEHFTKRNLDKFLTLTKIQK
DAALNIAISEAIVNTLCGYDVNKGQPDEKFVNKHCNDDDFDQFLNSLIRL
VTDPNPHSRQAISVWLLAVVKHCSQRPAVLAKKELLQFAFTELLSDDSEF
VQDVASRGLGLVYSISDSGSQSDLANSLLDQLIGGKRKVNQVTADTELFA
EGMLGKTPTGGNITTYKELCSLASDLNQPDMIYQFMQLANHNATWTSKLG
AAFGLKTLSAESRQKMEPYLGKIIPRLYRYKYDPTPKIQNSMISIWDTIV
TDSKEVTERYYWEILRELLDNLTCKEWRVRIACCLAVRDLLNRPNGLKLR
SEEPVRRALPDNSMEVDEVPEPELKELWFQLFRVMDDIHEGTRVAAHGTA
SFLGKLCVIASSSDHGKSGTAVASSILPFLLETGVGHKVPEIRRVSIKTI
SDMIDSSGSLIAPHLATLIPCLLRATGELENTKLSYVSTRLGADNEAQEA
VDTLRAEAAKSLHTMETIGKCVRYIDYSVLEKMTPEVLELMKGSVNLGTK
IGCAHFVCLISIRLGKEMTPLVGKYIRACFVGIKNRNATVRKYNASAIGH
LLGLAKEQSIKSLFTKLEELYAEQPGNRSIALTIQSINKRHHELLKDYMD
SMLPLIFFAMHEEPNEETKANVELWKDLWHDVSPGDAGIRLNLNVIIPKL
ESSLTDASWSRKAQAANAIQTIATRLSSSLDEPDRLRLIKLLLSGLQGRT
FEGKERLLQALAALTKGLDRNHQICSSIIDAAMREARKREPVYRTMALAS
LGEILDQLEADRFEEVYNMSWNLLEKKELRKESDDEDEPNTSQELSADER
NKRAQTLNRLKEVVWETLGKSWPRHSIETQHRYQLFFAENCTSILAESTR
PVQVSLLAALTKYIERLHVFDESAQVPDLTQINQEKKIKTEETAPKTREA
IVEKICTDVLAAVALAAGVPHSGLKKEALNIVLMLIKRLSGSGNGNQQPL
RLIKQSFESNLEKFQRDSAPEIRCRIKDIEDKLSKLNPQN*
BS11047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8858-PA | 1890 | CG8858-PA | 1..1890 | 1..1890 | 9629 | 100 | Plus |
