Clone Sequence Records
BS11048.complete Sequence
4013 bp assembled on 2009-12-07
GenBank Submission: KX802002
> BS11048.complete
GAAGTTATCAGTCGACATGGAAAGAGGATGCCCAGCTGCTAGCAGTGAAT
CCGTGACCAGTGCAGGGGAGCGTACTCAGTCAGCAGTCACCAGCTCCACC
TCCACGTGGGTCAAGAGTCAGGCCTCAACCAGCCGAAAAACAGAAGCATC
AGAAGAATCGGGATTAGGAGCAGTAGACGCAGAAGTAGGAGCCGGCAGAG
AAGCCTTTGTATCTATGTCAACGCTGCGGGAGGATGTGGAGGACGTGTGT
GTGTCGTCAAACTCACAACATGGTTTCGCCGTAGTTTTGGACGACGAGTC
CAGCACATTTGAGATTAGCTCTTCCAACTCACTGCCCACCAGTGCGGGGG
CGGCGTCCACAGTGGGAGTGGTGGCCGTCGACGACAGCTCCTCCACGGAT
ACCTTGAACGGTGGTCATCCTGACTTAGGTCACCCCGCCTCATCGGAACA
CAGTCGTCAGGGCTTTTTTAATGAGGATAATGAAGATCCTCCGGTTGTAT
GCCTTATAAACGACGATGACGATGATGAGGAACCCGAGCCGGAGGAGGAC
GATGAGGAGGAACTGATTGAAGACGAGGACGAGGACGCAGTGGACATTGT
AACGGGCGCCATCAGCTGCCCCAACACATCACAGTTGGCTTTAGCCGACG
GCACCATCATGGCGGCCGATGGATCTAAGATCTTCCTGGAGACGCCCGTC
GTGGAGGAGGCCCAGCCGCATCCCGGTCAGGTAGTCACAACGGGATCCCA
GTCGGAGCTCACAGGCAAGCCAAAAAGATTGAGCGATGAGTTCTTGCTGG
GTGAGGAAGACCAAGCAGAGAACCTGGCTTTGGGAAGATGTATTAAGTCT
GAGCCGGTTAATCCCGTGGACGACAATCCATCTGAAGGCGACGATGGGGC
TACTTGCTTCTCACTACATGACCGTCTTATGTCAGTGCGCCTGAAGCAGA
TGAGCCTCACGGCCAACACCGTTTCGAATCCCTCGCCAGCAGCCTCTGCC
AACGCCGCCGCCCCAGAGGAGGCCTCCACTTCCAACTCCAGCTCAACCTC
CAGCTCTGCCTTGTCGAGGGCAGACATTGAGTCCATGGATCTGATCGAGC
GTCGCGACTTTGAGACGGAGCAGCGTCTCACGGGCGGCATAATCCTGCGT
ACCAGCTCCATGGTGAGCCAGAACAAACTGAATCTAAGTCTGATCAAGTC
CATGGCGGGGGGAAGCAAGGCGGCCAATGGATCGGGTACGGCCAACAGTG
ACGACTGGCCCAGCAGCAGCAATGGGCGGACCGTCTCATCGGACAGCAAG
TACACCTACAAGGATCTGTCCACGACTCCAACGAGCAGTCGCAAGTACAC
GAATAGCCGGCTAAGCAAGTCCACTGCCAAATTAAATCTGGGATCCTCGT
TGGGCGCCTCCAGCTGCAGCCAGCACCGGAGTGGTTCCAGTTCCACTTCA
AAATCCATGGAGTCATCGACCAGTTGCACTGGAGCTGCCCGAACGGACGT
TTACACAAACACCAACTCGAATGATTACCCCAGTCTGGCTCCAACCACGT
CTGGTTCGTCCACATCCGGGGGAAGCTGTCAACAGGATCAGGAGGAGAAT
GTGAGTGCATCCGTCTCGTATAGCTCGGTGGGATCGCAGACCTCTCAGGA
AAGTGGTTGCAGTCGCACCACTGCCATCAATCCAACAGCTGCCTGCTCCA
CCGGATCGGCCTGCTTGGGTGACTCTCAGGCCTCGACATCGGCTTCTACC
TCGTCCGGAGCCGGAGCGTCCAACCGTTGCCAGTATGCCACTACATCGAC
GACAAAGGCAGCTCGCCAGGTTAATGCCAGCGCCCAAACCCAGGAGCGTT
TCCTGACTCGCAGCAATCCTCCAGCTGCTAGTGGAGCGGGGTCGGTTGGG
GCAAACCCGACAGCATCTGTTCGGCAACGGCGAAACGGTTCCAGCGATGT
TGTCCACCTGGAAGTGGTGGTGGAAGAGGGAGCTGGCGGAGGGGACGGCG
GCGTGGTGGAGCCCGGCGACTTTAGTGCCGAGGAACCTTGGGCCAACTGC
GATGAGGAGAACAACTGTTCCGATCTGGAGGAGATTTGCACATGCCAGAA
CGGTAACGGAAGCAGCTACGGCGGAAGCAATGCCAGTCTCAGCGAGACTT
TCGACATGGACGCCATGGATCCCGATGAGCCCATTTCCTTGTCGCTGTCC
TCTGCCTCAGCTGGCTTCACCGAATACTCGCTGACCAATCCCAGCTCGCT
AATGTCTCATCAGCGCAAACGAAAGTTCAACGAGGGACGTCTGCTGGATG
GCGGCGACTACTCGGTGACTATATCTTCCAGCGGCGAAGTGGGCGGACCG
GGTTCAGGTGTGAGCGATAATTGCCGCAAGCGGATTGCCTATGATTTTGC
ATCTACGCCGCGCTCCTCGCAACATTTGGGACCCACGGCAGTGCTATCGG
TGACGCCCTCATCGCATCTGACTAGCTCCACGCCGGGATCGGCTTTGGGT
CGTCGCACCCCACGTTCCGTGCCGTCTCGTGACAATCCGCCACCAGAGCT
GCAGCACTGGTTGGCACAATTCCAACGATGGTCCCATGTCGAGCGATTGC
TGGCCCTGGACCGTCTCATCGATCACTGCGATCCGTCTCAGGTGCGGCAC
ATGATGAAGGTGATTGAGCCGCAGTTCCAGCGGGACTTCATCTCCCTGCT
GCCAAGAGAGCTAGCCCTCTTTGTGCTCTCGTACTTGGAGCCCAAAGACT
TGCTGAGGGCAGCGCAGACCTGCCGCAGCTGGCGCTTCCTGTGCGACGAC
AATCTGTTGTGGAAGGAGAAGTGCCGCAAAGCCCAGATCCTCGCCGAGCC
GCGTAGTGATCGCCCGAAACGGGGACGCGATGGCAACATGCCGCCAATTG
CTTCGCCCTGGAAGGCCGCCTACATGCGTCAGCACATCATCGAAATGAAC
TGGCGGTCGCGACCTGTGCGCAAGCCCAAGGTACTCAAGGGCCACGACGA
TCATGTGATTACGTGCCTGCAGTTCTCTGGCAATCGCATTGTGTCCGGCT
CCGATGACAATACACTTAAAGTATGGTCAGCGGTGAACGGAAAGTGCCTG
CGCACTTTGGTTGGTCACACCGGTGGTGTTTGGTCTTCCCAAATGTCCGG
AAATATCATCATTTCAGGCAGCACGGATCGCACGCTCAAAGTCTGGGACA
TGGACAGCGGCGCATGTGTGCACACACTTCAGGGGCATACGTCCACTGTG
CGGTGTATGCATTTGCATGGCAGCAAAGTGGTCAGTGGCTCGCGAGACGC
AACCTTGAGGGTTTGGGACATTGAACAAGGCTCCTGTCTGCACGTTTTGG
TTGGTCACTTGGCTGCTGTGCGTTGTGTGCAGTACGATGGGAAGCTGATT
GTGTCCGGAGCGTATGATTATATGGTGAAGATCTGGCATCCGGAGCGCCA
GGAGTGCCTGCACACACTGCAGGGCCACACAAATCGCGTCTACTCGCTGC
AGTTTGATGGCCTGCATGTGGTATCGGGTTCATTGGACACCTCTATTCGC
GTGTGGGACGTGGAGACGGGCAATTGCAAGCACACCCTGATGGGTCATCA
GAGTTTGACCTCTGGCATGGAACTGCGTCAAAACATTCTTGTCTCGGGCA
ACGCCGACTCGACAGTCAAGGTGTGGGACATCACAACCGGACAATGTCTG
CAAACGCTGTCGGGTCCAAATAAGCATCATTCTGCGGTCACCTGCCTGCA
ATTTAACTCCCGATTTGTGGTGACCAGTTCCGACGATGGCACCGTGAAAT
TGTGGGACGTTAAGACGGGCGACTTTATACGTAATCTTGTGGCTCTGGAC
TCTGGTGGATCCGGCGGCGTTGTGTGGCGGATTAGAGCAAACGACACTAA
ACTCATTTGTGCCGTCGGTTCCCGCAACGGAACGGAGGAAACAAAGCTAA
TGGTCCTCGACTTTGATGTTGAGGGTGCATGTGTGAAGTGCTCATAGAAG
CTTTCTAGACCAT
BS11048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ago-RA | 3981 | CG15010-PA | 1..3981 | 17..3997 | 19905 | 100 | Plus |
| ago-RB | 3981 | CG15010-PB | 1..3981 | 17..3997 | 19905 | 100 | Plus |
| ago-RC | 3981 | CG15010-PC | 1..3981 | 17..3997 | 19905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ago-RA | 5223 | CG15010-RA | 110..4090 | 17..3997 | 19905 | 100 | Plus |
| ago-RB | 5268 | CG15010-RB | 155..4135 | 17..3997 | 19905 | 100 | Plus |
| ago-RC | 5332 | CG15010-RC | 219..4199 | 17..3997 | 19905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4248724..4251801 | 3094..17 | 15390 | 100 | Minus |
| 3L | 28110227 | 3L | 4248183..4248408 | 3502..3277 | 1130 | 100 | Minus |
| 3L | 28110227 | 3L | 4247910..4248125 | 3715..3500 | 1080 | 100 | Minus |
| 3L | 28110227 | 3L | 4248473..4248656 | 3276..3093 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 4247654..4247826 | 3885..3713 | 865 | 100 | Minus |
| 3L | 28110227 | 3L | 4247476..4247589 | 3997..3884 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:08:56 has no hits.
BS11048.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:11 Download gff for
BS11048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ago-RA | 178..4158 | 17..3997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:11 Download gff for
BS11048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ago-RC | 219..4199 | 17..3997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:39 Download gff for
BS11048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ago-RA | 178..4158 | 17..3997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:00 Download gff for
BS11048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ago-RC | 219..4199 | 17..3997 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:00 Download gff for
BS11048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4247476..4247587 | 3886..3997 | 100 | <- | Minus |
| 3L | 4247654..4247825 | 3714..3885 | 100 | <- | Minus |
| 3L | 4247912..4248122 | 3503..3713 | 100 | <- | Minus |
| 3L | 4248183..4248408 | 3277..3502 | 100 | <- | Minus |
| 3L | 4248473..4248654 | 3095..3276 | 100 | <- | Minus |
| 3L | 4248724..4251801 | 17..3094 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:11 Download gff for
BS11048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4247476..4247587 | 3886..3997 | 100 | <- | Minus |
| arm_3L | 4247654..4247825 | 3714..3885 | 100 | <- | Minus |
| arm_3L | 4247912..4248122 | 3503..3713 | 100 | <- | Minus |
| arm_3L | 4248183..4248408 | 3277..3502 | 100 | <- | Minus |
| arm_3L | 4248473..4248654 | 3095..3276 | 100 | <- | Minus |
| arm_3L | 4248724..4251801 | 17..3094 | 100 | | Minus |
BS11048.5prime Sequence
805 bp (769 high quality bases) assembled on 2006-04-19
> BS11048.5prime
GAAGTTATCAGTCGACATGGAAAGAGGATGCCCAGCTGCTAGCAGTGAAT
CCGTGACCAGTGCAGGGGAGCGTACTCAGTCAGCAGTCACCAGCTCCACC
TCCACGTGGGTCAAGAGTCAGGCCTCAACCAGCCGAAAAACAGAAGCATC
AGAAGAATCGGGATTAGGAGCAGTAGACGCAGAAGTAGGAGCCGGCAGAG
AAGCCTTTGTATCTATGTCAACGCTGCGGGAGGATGTGGAGGACGTGTGT
GTGTCGTCAAACTCACAACATGGTTTCGCCGTAGTTTTGGACGACGAGTC
CAGCACATTTGAGATTAGCTCTTCCAACTCACTGCCCACCAGTGCGGGGG
CGGCGTCCACAGTGGGAGTGGTGGCCGTCGACGACAGCTCCTCCACGGAT
ACCTTGAACGGTGGTCATCCTGACTTAGGTCACCCCGCCTCATCGGAACA
CAGTCGTCAGGGCTTTTTTAATGAGGATAATGAAGATCCTCCGGTTGTAT
GCCTTATAAACGACGATGACGATGATGAGGAACCCGAGCCGGAGGAGGAC
GATGAGGAGGAACTGATTGAAGACGAGGACGAGGACGCAGTGGACATTGT
AACGGGCGCCATCAGCTGCCCCAACACATCACAGTTGGCTTTAGCCGACG
GCACCATCATGGCGGCCGATGGATCTAAGATCTTCCTGGAGACGCCCGTC
GTGGAGGAGGCCCAGCCGCATCCCGGTCAGGTAGTCACAACGGGATCCCA
GTCGGAGCTCACAGGCAAGCCAAAAAGATTGAGCGATGAGTTCTTGCTGG
GTGAG
BS11048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15010-PC | 3981 | ago-RC | 1..789 | 17..805 | 3945 | 100 | Plus |
| CG15010-PB | 3981 | ago-RB | 1..789 | 17..805 | 3945 | 100 | Plus |
| CG15010-PA | 3981 | ago-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ago-RA | 5223 | CG15010-RA | 110..898 | 17..805 | 3945 | 100 | Plus |
| ago-RB | 5268 | CG15010-RB | 155..943 | 17..805 | 3945 | 100 | Plus |
| ago-RC | 5332 | CG15010-RC | 219..1007 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4251013..4251801 | 805..17 | 3945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:56:09 has no hits.
BS11048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:08 Download gff for
BS11048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ago-PC | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:57 Download gff for
BS11048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15010-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:17:37 Download gff for
BS11048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ago-RC | 213..1007 | 10..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:31:38 Download gff for
BS11048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ago-RC | 213..1007 | 10..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:31:38 Download gff for
BS11048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4251013..4251807 | 10..805 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:17:37 Download gff for
BS11048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4251013..4251807 | 10..805 | 99 | | Minus |
BS11048.pep Sequence
Translation from 16 to 3996
> BS11048.pep
MERGCPAASSESVTSAGERTQSAVTSSTSTWVKSQASTSRKTEASEESGL
GAVDAEVGAGREAFVSMSTLREDVEDVCVSSNSQHGFAVVLDDESSTFEI
SSSNSLPTSAGAASTVGVVAVDDSSSTDTLNGGHPDLGHPASSEHSRQGF
FNEDNEDPPVVCLINDDDDDEEPEPEEDDEEELIEDEDEDAVDIVTGAIS
CPNTSQLALADGTIMAADGSKIFLETPVVEEAQPHPGQVVTTGSQSELTG
KPKRLSDEFLLGEEDQAENLALGRCIKSEPVNPVDDNPSEGDDGATCFSL
HDRLMSVRLKQMSLTANTVSNPSPAASANAAAPEEASTSNSSSTSSSALS
RADIESMDLIERRDFETEQRLTGGIILRTSSMVSQNKLNLSLIKSMAGGS
KAANGSGTANSDDWPSSSNGRTVSSDSKYTYKDLSTTPTSSRKYTNSRLS
KSTAKLNLGSSLGASSCSQHRSGSSSTSKSMESSTSCTGAARTDVYTNTN
SNDYPSLAPTTSGSSTSGGSCQQDQEENVSASVSYSSVGSQTSQESGCSR
TTAINPTAACSTGSACLGDSQASTSASTSSGAGASNRCQYATTSTTKAAR
QVNASAQTQERFLTRSNPPAASGAGSVGANPTASVRQRRNGSSDVVHLEV
VVEEGAGGGDGGVVEPGDFSAEEPWANCDEENNCSDLEEICTCQNGNGSS
YGGSNASLSETFDMDAMDPDEPISLSLSSASAGFTEYSLTNPSSLMSHQR
KRKFNEGRLLDGGDYSVTISSSGEVGGPGSGVSDNCRKRIAYDFASTPRS
SQHLGPTAVLSVTPSSHLTSSTPGSALGRRTPRSVPSRDNPPPELQHWLA
QFQRWSHVERLLALDRLIDHCDPSQVRHMMKVIEPQFQRDFISLLPRELA
LFVLSYLEPKDLLRAAQTCRSWRFLCDDNLLWKEKCRKAQILAEPRSDRP
KRGRDGNMPPIASPWKAAYMRQHIIEMNWRSRPVRKPKVLKGHDDHVITC
LQFSGNRIVSGSDDNTLKVWSAVNGKCLRTLVGHTGGVWSSQMSGNIIIS
GSTDRTLKVWDMDSGACVHTLQGHTSTVRCMHLHGSKVVSGSRDATLRVW
DIEQGSCLHVLVGHLAAVRCVQYDGKLIVSGAYDYMVKIWHPERQECLHT
LQGHTNRVYSLQFDGLHVVSGSLDTSIRVWDVETGNCKHTLMGHQSLTSG
MELRQNILVSGNADSTVKVWDITTGQCLQTLSGPNKHHSAVTCLQFNSRF
VVTSSDDGTVKLWDVKTGDFIRNLVALDSGGSGGVVWRIRANDTKLICAV
GSRNGTEETKLMVLDFDVEGACVKCS*
BS11048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ago-PA | 1326 | CG15010-PA | 1..1326 | 1..1326 | 6876 | 100 | Plus |
| ago-PB | 1326 | CG15010-PB | 1..1326 | 1..1326 | 6876 | 100 | Plus |
| ago-PC | 1326 | CG15010-PC | 1..1326 | 1..1326 | 6876 | 100 | Plus |
| slmb-PC | 510 | CG3412-PC | 49..488 | 852..1264 | 606 | 33.5 | Plus |
| slmb-PA | 510 | CG3412-PA | 49..488 | 852..1264 | 606 | 33.5 | Plus |
| slmb-PC | 510 | CG3412-PC | 213..409 | 1078..1274 | 365 | 35 | Plus |
| slmb-PC | 510 | CG3412-PC | 223..287 | 1208..1275 | 171 | 42.6 | Plus |
