Clone BS11049 Report

Search the DGRC for BS11049

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:110
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptSNF4Agamma-RF
Protein status:BS11049.pep: full length peptide match
Sequenced Size:4235

Clone Sequence Records

BS11049.5prime Sequence

919 bp (835 high quality bases) assembled on 2006-04-19

> BS11049.5prime
GAAGTTATCAGTCGACATGGCCACGAACTGCGACTTCATCGAGCAGCCAG
TGAAACAGCAGCCGTTGGCCAATGCACCAGTCATGGGCGTCCAGGAGGAT
AAGGCACAGGAGCCCAAGGAGTTGCCGGATGAGCCGGCGAAGCAGCCAGA
CGGCCAACCATACCAGCATTTCGCTGGCGAGGATAGCTTCGAATGCGCCT
TCGAGTCGACCATGGACGACCTGGAGCAGGGTGTCCTGGATGGTTACGAG
TCGGACTCGGAGGCGAGTGCCAACGACCAGATCACTGATTCCGCCTCCTC
TGGCAGCCTGGGCCAATTGGCCCAGCAGCAGCAGCGCGAGGAGCGATTGA
GGGGCTTGCCGGGTCCACTTCATGGCCAGCATATCGATTCCGAGATGCTC
AAGTGCATGCCGCGATCGAACTCCTTCGACTTTCACAGCAGCAGTGGCAG
CAGCTCGGATGACGAGGATGATCCGGATGATGACGACGACGATCAAGTTC
ACCACAGCCTGGGGCTCAGCCTCAGCGGGAAGTTTGTCAAGGTTGATCTC
TATTCGGGTCACCAGAGACCCGGCTATCTGTTACCTCCCTACATCGAACG
ACGCCGCTTGTCGCAGTGCAAGGAGGAGGATGACGAGGATGAGGGCGACA
GGACGCAGCTGGGCGGCGGCTCATCATCCACGGGAGAGTCAACCAAATCC
GAAAAAGCTTCGAAGGCGCCACCAAGGCCACCCACGCCACAGGATGAGGC
CTCCAAGGAGAAGTTTAAGGATCTGGAGCGTCTGCGGCAGCAGTTTATGC
ACAAGATCGATAGGATCAATACGCGAAATATCGAGGAGAGTGAGGCACCG
CCGCCACCACCTCCTCCGCCGCCTCCCATACCAGCCCCGAATCTACCAAA
AGGCGCTAAAAGCGCTACT

BS11049.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17299-PF 4203 SNF4Agamma-RF 1..884 17..900 4370 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
SNF4Agamma-RF 4769 CG17299-RF 407..1308 17..919 4445 99.6 Plus
SNF4Agamma-RS 4592 CG17299-RS 230..1131 17..919 4445 99.6 Plus
SNF4Agamma-RR 6292 CG17299-RR 348..1249 17..919 4445 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21173975..21174876 17..919 4420 99.6 Plus
Blast to na_te.dros performed on 2015-02-10 07:02:38 has no hits.

BS11049.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:09 Download gff for BS11049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17299-PF 1..902 17..919 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:23:59 Download gff for BS11049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17299-PF 1..902 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:07:14 Download gff for BS11049.5prime
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RR 339..1249 7..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:43:27 Download gff for BS11049.5prime
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RR 339..1249 7..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:43:27 Download gff for BS11049.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21173966..21174876 7..919 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:07:14 Download gff for BS11049.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16999688..17000598 7..919 99   Plus

BS11049.complete Sequence

4235 bp assembled on 2010-01-09

GenBank Submission: KX803875

> BS11049.complete
GAAGTTATCAGTCGACATGGCCACGAACTGCGACTTCATCGAGCAGCCAG
TGAAACAGCAGCCGTTGGCCAATGCACCAGTCATGGGCGTCCAGGAGGAT
AAGGCACAGGAGCCCAAGGAGTTGCCGGATGAGCCGGCGAAGCAGCCAGA
CGGCCAACCATACCAGCATTTCGCTGGCGAGGATAGCTTCGAATGCGCCT
TCGAGTCGACCATGGACGACCTGGAGCAGGGTGTCCTGGATGGTTACGAG
TCGGACTCGGAGGCGAGTGCCAACGACCAGATCACTGATTCCGCCTCCTC
TGGCAGCCTGGGCCAATTGGCCCAGCAGCAGCAGCGCGAGGAGCGATTGA
GGGGCTTGCCGGGTCCACTTCATGGCCAGCATATCGATTCCGAGATGCTC
AAGTGCATGCCGCGATCGAACTCCTTCGACTTTCACAGCAGCAGTGGCAG
CAGCTCGGATGACGAGGATGATCCGGATGATGACGACGACGATCAAGTTC
ACCACAGCCTGGGGCTCAGCCTCAGCGGGAAGTTTGTCAAGGTTGATCTC
TATTCGGGTCACCAGAGACCCGGCTATCTGTTACCTCCCTACATCGAACG
ACGCCGCTTGTCGCAGTGCAAGGAGGAGGATGACGAGGATGAGGGCGACA
GGACGCAGCTGGGCGGCGGCTCATCATCCACGGGAGAGTCAACCAAATCC
GAAAAAGCTTCGAAGGCGCCACCAAGGCCACCCACGCCACAGGATGAGGC
CTCCAAGGAGAAGTTTAAGGATCTGGAGCGTCTGCGGCAGCAGTTTATGC
ACAAGATCGATAGGATCAATACGCGAAATATCGAGGAGAGTGAGGCACCG
CCGCCACCACCTCCTCCGCCGCCTCCCATACCAGCCACGATTCTACCAAA
GGCGCTAAAGGCGCTACTGCACACCCAGGAACCAGTGGCGCCTCCTTCCC
GTCCATCTCCAGTTGGCCCACCAAGTCCTGCACCCACGTCCAGCGTTATT
GTGGCAAAGGAAACACCGGTTCCTGTAACACCGGAGCCCGTTTCCCCGCT
GCCGCTGCCCACGGAGCCGCCGCTGATTATCAAGGGCAAATTTAAGGTGA
CACTCGCCCAGGAGACACCCGAACTGCGAGTCGAGGCCCAGAAGCTGAGC
AAACTGAATGCCAGCTCGAATGCCCACACCATCAGCTTTCCCTCCAGCTT
CGGAGGCTACTCCTCGGTGCAGGGACTGTTCTCCCAGCGATATGGCTCAA
ATCGGTTTCCCACCGCCGCTCCCCACATGTCCAAGCAGTTCTTCGAGCCA
TCGCTGGTGGAGATTCGCACGCCGGCCCAGAGCAACGTGGCGCTGAATAC
AACTGGGCTGGCCAATAGCAATCACCAAAGCCTCACTTGTGATACAAATA
GTTTAGCCAACAAGCCGCGCACGCCCAGCGAACGGGAGCTGGACGAGATC
TGGATACGGCGGCAGGACGGTGGATTGAGTGGCACTGCTGCACCAGGCGC
ACCGGGTGCTCCACTTCCTCTGCTCCAGCAGCAGCAGCAGCAGCAGAGAC
CCGTCTCCCTGGGTGGGGCGTCTACCATGCCCCGTTTGCTGAGGAGCGAG
AGCAGTGCCTCCACCACAAGTCCATCCCGCCAGCTCACCAACTCGGGATC
CGTCTCCGTTTCCGTGTCCGATGATGAGCAGGATGGCAGCCTCGGAGGAG
CCGGCCGGATGCCAGGATCACGACCCTCCAGCGCTCCCGCAGAGCCAAAT
GCCAAGGCGGCCAAGAAGGCCTACAAAAAGATGGAAAAGGAGCAGCGTCG
CCAGGAGAAGGAGCAGTCGCGACGGGAAAAGGAGGCCCGCAAGCTGGAGC
GCGAGACGGCGAGAAGGAACGAACGCGAGGCGGCCAAGCTGGAGAAGATC
AACAGGCACAGCGAGAAGATCTCACGCAGCACGGAGCGAATGGCCATGGC
CGGTGTGGGATCGCGGTCCGGTTCGCTGGAGCGGAGGCGAAGCGGCGAGG
ACTCGCCCGTGCTCAATCAGTCGACGGTGCACGGTATAGCGTCACCCAAC
CGAAGGCCAACGATATTCGACGTTTTCCGACCGCGTGCGAAATCCGATGC
GAAGCGGCAGAAGGAGAAGCATCTGCTGGATCCCTCGTCCGCCGACAGCA
GCGCCACCAGCAGCACCTACTCCGTTTCCGGCGGCACAGGCCCGGCCACG
AGCTCGGCAGCAGGTGGAGCAGGAGGAGCGGCGGCAGCAGCAGGACAGGG
CGCAGCGGGAGGAGCCGGTGGCCTTATGAACTCCATGAAGGTGGCCATGC
AGAACTTTAGCCATCGCCAGCATCCCGCCGTGACGATAACGAGCGCCGAC
GGCACGCAATCAACGGCAAAGAGCAAGTACAAAGACGGCAGTGCCCATCC
GCATCAAGGCAGCGACGCGCAGTATTACCACACGGTGACGGCGGTGCGTC
CAAACTCTTCCCAACGGTCGCCGATGACCAAGGTCATGGATCTGTTCCGG
CATCGATCCAGCTCGGTTGTCAGCGAAGCCGACAAACGCAAAGCGCGCGC
GGCGGCGCATCAGCAACAGTTGGCTGTGCAAAGTGCTCACATGCGTCGTG
CCTCCGCGGATTTGGAGAAACGTCGTGCATCAGTTGGTGCCGCAGGTCGA
GGACTGCGAGGGGATGGTACTTTGGATCCACACCATGCAGCCATCCTCTT
CAGAGACTCACGAGGGTTGCCTGTCGCTGATCCGTTCCTAGAGAAAGTAA
ATCTATCAGATCTGGAAGAGGACGACTCACAGATCTTCGTGAAGTTCTTT
CGTTTTCACAAGTGCTATGATCTGATACCCACCTCCGCCAAGTTGGTTGT
CTTCGACACCCAGCTTCTTGTAAAGAAGGCCTTCTACGCCCTCGTCTACA
ACGGTGTGCGAGCGGCACCGCTCTGGGATTCGGAGAAGCAACAGTTCGTG
GGCATGCTAACCATCACGGACTTTATCAAGATCCTGCAAATGTATTACAA
ATCGCCAAATGCGTCCATGGAGCAGCTGGAAGAGCACAAACTGGACACGT
GGCGGAGCGTGCTGCACAACCAGGTGATGCCGTTGGTCAGCATCGGACCG
GATGCGTCCCTCTACGATGCCATCAAAATTCTCATCCACAGCCGCATACA
TCGCCTGCCCGTCATCGATCCGGCGACCGGCAATGTCCTCTACATCCTGA
CACATAAACGCATACTTAGGTTCCTTTTCCTATACATTAATGAATTACCA
AAGCCCGCGTACATGCAAAAAAGTTTGCGCGAACTGAAGATTGGCACCTA
TAACAACATCGAGACCGCCGACGAGACGACGAGCATCATCACGGCGCTCA
AGAAATTTGTGGAGCGACGAGTCTCAGCCCTGCCACTAGTGGATTCCGAT
GGTCGCCTCGTTGACATTTACGCAAAGTTTGATGTGATTAATCTCGCCGC
CGAGAAAACCTACAACGATCTCGATGTTTCGCTGCGCAAAGCCAACGAGC
ACCGGAACGAGTGGTTCGAGGGCGTGCAGAAGTGCAATCTGGACGAATCG
CTCTACACGATCATGGAACGAATCGTCCGCGCCGAAGTACATCGACTGGT
GGTGGTCGACGAGAATCGCAAAGTGATCGGCATTATCTCGCTGTCCGATA
TACTGCTCTACCTCGTCCTGCGACCAAGCGGTGAAGGCGTCGGTGGCTCG
GAGAGCTCATTGCGTGCGTCCGATCCCGTTCTGCTGCGCAAAGTGGCTGA
GGTTGAAATACCAGCGACAGCCGCAGCGGCGACGACAACAACCCCGCCTC
GCAGTCCATCGGCCGGATCCGGCAATCGCAGCCTGATCGAGGACATACCC
GAAGAGGAGACGGCGCCGGCGAGGAGCGACGATGCCGACAGTGATAACAA
TAAGTCCGCCAGTGAGGATAAAGCCAACAATAACCAGCACGACCAGACGA
CGACGGCTGCGACAGCTAATGGTGATAGCAACAACAGCCCCGTAGAAGTG
TCCTTTGCCGATGAGGCGCAGGAAGAAGAAGCTGCCGACCAGGTCGAGCG
CAGCAATTGTGATGATGATGACCAGCCAGCGTTAGCGGAGATTGAGCGCA
AGAATGCATCGATGGACGACGACGAGGACGATGGGATGAGCAGCGCCGTG
TCCGCTGCCTCCGCTTTGGGCCAGTCACTGACGCCCGCGGCGCAAGAAAT
GGCGTTGGTTAGTGAATAAAAGCTTTCTAGACCAT

BS11049.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
SNF4Agamma-RF 4203 CG17299-PF 1..4203 17..4219 21015 100 Plus
SNF4Agamma-RS 4203 CG17299-PS 1..4203 17..4219 21015 100 Plus
SNF4Agamma-RR 4203 CG17299-PR 1..4203 17..4219 21015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
SNF4Agamma-RF 4769 CG17299-RF 407..4610 17..4220 21020 100 Plus
SNF4Agamma-RS 4592 CG17299-RS 230..4433 17..4220 21020 100 Plus
SNF4Agamma-RR 6292 CG17299-RR 348..4551 17..4220 21020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21173975..21175634 17..1676 8300 100 Plus
3R 32079331 3R 21211748..21212528 3440..4220 3905 100 Plus
3R 32079331 3R 21178579..21179204 1797..2422 3130 100 Plus
3R 32079331 3R 21210788..21211080 2765..3057 1465 100 Plus
3R 32079331 3R 21211387..21211590 3236..3439 1020 100 Plus
3R 32079331 3R 21211141..21211319 3057..3235 895 100 Plus
3R 32079331 3R 21202452..21202585 2583..2716 670 100 Plus
3R 32079331 3R 21179265..21179390 2420..2545 630 100 Plus
3R 32079331 3R 21178278..21178399 1676..1797 610 100 Plus
3R 32079331 3R 21207618..21207667 2716..2765 250 100 Plus
3R 32079331 3R 21185547..21185586 2545..2584 200 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:56:02 has no hits.

BS11049.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:55 Download gff for BS11049.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RF 391..4591 17..4217 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:43 Download gff for BS11049.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RR 348..4548 17..4217 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:07 Download gff for BS11049.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RF 391..4591 17..4217 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:01 Download gff for BS11049.complete
Subject Subject Range Query Range Percent Splice Strand
SNF4Agamma-RR 348..4548 17..4217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:01 Download gff for BS11049.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21211387..21211590 3236..3439 100 -> Plus
3R 21211748..21212525 3440..4217 100   Plus
3R 21211141..21211319 3057..3235 100 -> Plus
3R 21173975..21175633 17..1675 100 -> Plus
3R 21178278..21178399 1676..1797 100 -> Plus
3R 21178580..21179204 1798..2422 100 -> Plus
3R 21179268..21179390 2423..2545 100 -> Plus
3R 21185548..21185584 2546..2582 100 -> Plus
3R 21202452..21202585 2583..2716 100 -> Plus
3R 21207619..21207667 2717..2765 100 -> Plus
3R 21210789..21211079 2766..3056 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:43 Download gff for BS11049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17036863..17037041 3057..3235 100 -> Plus
arm_3R 17037109..17037312 3236..3439 100 -> Plus
arm_3R 16999697..17001355 17..1675 100 -> Plus
arm_3R 17004000..17004121 1676..1797 100 -> Plus
arm_3R 17004302..17004926 1798..2422 100 -> Plus
arm_3R 17004990..17005112 2423..2545 100 -> Plus
arm_3R 17011270..17011306 2546..2582 100 -> Plus
arm_3R 17028174..17028307 2583..2716 100 -> Plus
arm_3R 17033341..17033389 2717..2765 100 -> Plus
arm_3R 17036511..17036801 2766..3056 100 -> Plus
arm_3R 17037470..17038247 3440..4217 100   Plus

BS11049.pep Sequence

Translation from 16 to 4218

> BS11049.pep
MATNCDFIEQPVKQQPLANAPVMGVQEDKAQEPKELPDEPAKQPDGQPYQ
HFAGEDSFECAFESTMDDLEQGVLDGYESDSEASANDQITDSASSGSLGQ
LAQQQQREERLRGLPGPLHGQHIDSEMLKCMPRSNSFDFHSSSGSSSDDE
DDPDDDDDDQVHHSLGLSLSGKFVKVDLYSGHQRPGYLLPPYIERRRLSQ
CKEEDDEDEGDRTQLGGGSSSTGESTKSEKASKAPPRPPTPQDEASKEKF
KDLERLRQQFMHKIDRINTRNIEESEAPPPPPPPPPPIPATILPKALKAL
LHTQEPVAPPSRPSPVGPPSPAPTSSVIVAKETPVPVTPEPVSPLPLPTE
PPLIIKGKFKVTLAQETPELRVEAQKLSKLNASSNAHTISFPSSFGGYSS
VQGLFSQRYGSNRFPTAAPHMSKQFFEPSLVEIRTPAQSNVALNTTGLAN
SNHQSLTCDTNSLANKPRTPSERELDEIWIRRQDGGLSGTAAPGAPGAPL
PLLQQQQQQQRPVSLGGASTMPRLLRSESSASTTSPSRQLTNSGSVSVSV
SDDEQDGSLGGAGRMPGSRPSSAPAEPNAKAAKKAYKKMEKEQRRQEKEQ
SRREKEARKLERETARRNEREAAKLEKINRHSEKISRSTERMAMAGVGSR
SGSLERRRSGEDSPVLNQSTVHGIASPNRRPTIFDVFRPRAKSDAKRQKE
KHLLDPSSADSSATSSTYSVSGGTGPATSSAAGGAGGAAAAAGQGAAGGA
GGLMNSMKVAMQNFSHRQHPAVTITSADGTQSTAKSKYKDGSAHPHQGSD
AQYYHTVTAVRPNSSQRSPMTKVMDLFRHRSSSVVSEADKRKARAAAHQQ
QLAVQSAHMRRASADLEKRRASVGAAGRGLRGDGTLDPHHAAILFRDSRG
LPVADPFLEKVNLSDLEEDDSQIFVKFFRFHKCYDLIPTSAKLVVFDTQL
LVKKAFYALVYNGVRAAPLWDSEKQQFVGMLTITDFIKILQMYYKSPNAS
MEQLEEHKLDTWRSVLHNQVMPLVSIGPDASLYDAIKILIHSRIHRLPVI
DPATGNVLYILTHKRILRFLFLYINELPKPAYMQKSLRELKIGTYNNIET
ADETTSIITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLAAEKTYN
DLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERIVRAEVHRLVVVDEN
RKVIGIISLSDILLYLVLRPSGEGVGGSESSLRASDPVLLRKVAEVEIPA
TAAAATTTTPPRSPSAGSGNRSLIEDIPEEETAPARSDDADSDNNKSASE
DKANNNQHDQTTTAATANGDSNNSPVEVSFADEAQEEEAADQVERSNCDD
DDQPALAEIERKNASMDDDEDDGMSSAVSAASALGQSLTPAAQEMALVSE
*

BS11049.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
SNF4Agamma-PF 1400 CG17299-PF 1..1400 1..1400 7151 100 Plus
SNF4Agamma-PS 1400 CG17299-PS 1..1400 1..1400 7151 100 Plus
SNF4Agamma-PR 1400 CG17299-PR 1..1400 1..1400 7151 100 Plus
SNF4Agamma-PA 947 CG17299-PA 99..947 552..1400 4269 99.8 Plus
SNF4Agamma-PB 947 CG17299-PB 99..947 552..1400 4269 99.8 Plus