Clone Sequence Records
BS11055.3prime Sequence
905 bp (819 high quality bases) assembled on 2006-04-19
> BS11055.3prime
ATGGTCTAGAAAGCTTCTAGTCCATGTCATCGTCGTCATCGTCTGAAATA
GTGTACTTCTTTTGGGAGCGCTTGCGACGCGTCTGCTTCTTGGATGTGGT
AGCCGCTCCGCTGCTCACATTCGACGATGATTGCGTGGGCGTAGCGGGCG
CACTAGCCAGAGATTTGTTCAGTTTCAGCTTCATTTTGACAGCCGCCGCT
GAAGTGGTTGCAATCTCCTCGTCGTCGGAGCCGTCATCGCCACCATCGTC
GTCGTCGTTGTCCGAATTATCCGAACCTCCATTGCCGTGCGCTTCACCCG
TGTTATCTCCGGCTGCCACTGCGGCTGCATCCGCTGCAGCTGTTATCCTC
TGCCTGGCCCCAACGAATACCTTTTGCAGGGCAATCGAGTCCAGGTAAAT
CAGAGACGCCTCTTCGTTGTAGATCTGTGCATTCTGGCATAGCTGCATAA
AGTCCTTCTCCAGCTCGTTGAGATCGGCATACTTGCAGTCCTCAATGCGC
TGCAGGATTTTCTTAATATCAACTGGCCGCTTAATGATCTCGTAGTAGTC
GGGCAACCTCTGCCGCGAAGGCAACTTCATGAACGGTTCGGACAGGGTTC
GTCCATCTTGGTTGTGCTTGATAACCGCACTCATAATCTTGTGCATCTGC
TTCTTGGACCGCTTGTCCAGATTTTGGCGTCGTCGCCGTTTTAGGATCAA
CGAATCATCGTCGGACTCTTCCTTCCGATTCTTACGCTTTCGTCGCTTGC
GCTTCGAATCGTCTTCCTCCTCTTCCTCGTCGAACTCAGCGCCATCGTCG
ATGGCTTTCAGCCACTCCTTTTCAGTCAAACTATCGGTGTAGTCTACTTC
CTTTCGCTGCCGGGAGCCTCGACCTAGAATGGTATCCTCGTCGTACTGAT
AGTGG
BS11055.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5942-PC | 4905 | brm-RC | 4017..4905 | 905..17 | 4445 | 100 | Minus |
| CG5942-PD | 4905 | brm-RD | 4017..4905 | 905..17 | 4445 | 100 | Minus |
| CG5942-PA | 4917 | brm-RA | 4029..4917 | 905..17 | 4445 | 100 | Minus |
| CG5942-PB | 4917 | brm-RB | 4029..4917 | 905..17 | 4445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brm-RF | 5351 | CG5942-RF | 4168..5056 | 905..17 | 4445 | 100 | Minus |
| brm-RE | 5339 | CG5942-RE | 4156..5044 | 905..17 | 4445 | 100 | Minus |
| brm-RB | 5553 | CG5942-RB | 4370..5258 | 905..17 | 4445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15970377..15971236 | 17..876 | 4300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:33:07 has no hits.
BS11055.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:20 Download gff for
BS11055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brm-PD | 4017..4905 | 17..905 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:11 Download gff for
BS11055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5942-PB | 4029..4917 | 17..905 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:56:19 Download gff for
BS11055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brm-RB | 4370..5260 | 12..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:27:40 Download gff for
BS11055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brm-RB | 4370..5260 | 12..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:27:40 Download gff for
BS11055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15970375..15971233 | 12..873 | 99 | <- | Plus |
| 3L | 15971294..15971325 | 874..905 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:56:19 Download gff for
BS11055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15963475..15964333 | 12..873 | 99 | <- | Plus |
| arm_3L | 15964394..15964425 | 874..905 | 100 | | Plus |
BS11055.5prime Sequence
843 bp (830 high quality bases) assembled on 2006-04-19
> BS11055.5prime
GAAGTTATCAGTCGACATGGCCTCGCCCTCTCCGGCGAACAGTCCCATGC
CACCGCCACAGGCGCCCAGTCCGATGGCCCCGCCCTCGCAGAGTCCCGCC
CCCTCGCCGCACAGCCCGTATCCGCACCAGCAGCCGGGTCCACTGCAAGG
ACCTCCGCCACCCGGACATCCCGGTGCCTACGGACATCCCATGCAGCACG
GACCACCCGGCCAGGGTCCACCCGGGCATCATATGCCACCGCACCACCAG
GGGATGATTTTCTCAAAAGGTCCGCACATGGGAATGCAGATGCCGCCGAC
GGGACCGAACATGTCCCCCTACCAAACCCACGGAATGCCACCCAATGCAC
CCACACAACCCTGCATAGTGTCACCTGGTGGCCCACCTGGAGGCCCGCCA
CCTCCGGAGCGCTCGAGCCAGGAGAACCTGCACGCGCTTCAACGCGCCAT
TGATTCAATGGAGGAAAAGGGCTTGCAAGAGGATCCTCGCTACTCGCAGC
TGCTGGCAATGCGAGCAACCTCGAAGCATCAGCACCTTAATGGCAATCAG
GTTAACTTGTTGCGCACACAGATCACCGCCTATCGGTTGCTGGCGCGGAA
CAAGCCCATATCCATGCAGATGCAGCAGGCGTTGCAGGCCGCACAGCAAC
AGCCACCGCCAGGACCTCCAATTGGGCCACCTGGAGCACCAGGCGGACCG
CCACCAGGGAGCCAGCATGCAGGACAACCGCCCGTGCCGCCGCAACAACA
GCAACAACCGCCACCTTCAGCAGGAACTCCACCCCAGTGCTCCACGCCGC
CCGCAAGCAATCCTTATGGACCGCCAGTTCCTGGCCAGAAAAT
BS11055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5942-PA | 4917 | brm-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
| CG5942-PB | 4917 | brm-RB | 1..827 | 17..843 | 4135 | 100 | Plus |
| CG5942-PC | 4905 | brm-RC | 242..815 | 270..843 | 2870 | 100 | Plus |
| CG5942-PD | 4905 | brm-RD | 242..815 | 270..843 | 2870 | 100 | Plus |
| CG5942-PC | 4905 | brm-RC | 1..241 | 17..257 | 1205 | 100 | Plus |
| CG5942-PD | 4905 | brm-RD | 1..241 | 17..257 | 1205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brm-RE | 5339 | CG5942-RE | 128..954 | 17..843 | 4135 | 100 | Plus |
| brm-RB | 5553 | CG5942-RB | 342..1168 | 17..843 | 4135 | 100 | Plus |
| brm-RA | 5339 | CG5942-RA | 128..954 | 17..843 | 4135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15974600..15975096 | 843..347 | 2485 | 100 | Minus |
| 3L | 28110227 | 3L | 15982268..15982508 | 257..17 | 1205 | 100 | Minus |
| 3L | 28110227 | 3L | 15982122..15982211 | 347..258 | 450 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 01:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1537..1588 | 711..765 | 114 | 72.7 | Plus |
BS11055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:57:21 Download gff for
BS11055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brm-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:24:12 Download gff for
BS11055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5942-PB | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:18:10 Download gff for
BS11055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brm-RA | 128..954 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:49:01 Download gff for
BS11055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brm-RA | 128..954 | 17..843 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:49:01 Download gff for
BS11055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15974600..15975096 | 347..843 | 100 | <- | Minus |
| 3L | 15982123..15982211 | 258..346 | 100 | <- | Minus |
| 3L | 15982268..15982508 | 17..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:18:10 Download gff for
BS11055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15967700..15968196 | 347..843 | 100 | <- | Minus |
| arm_3L | 15975223..15975311 | 258..346 | 100 | <- | Minus |
| arm_3L | 15975368..15975608 | 17..257 | 100 | | Minus |
BS11055.complete Sequence
4949 bp assembled on 2009-12-07
GenBank Submission: KX802385
> BS11055.complete
GAAGTTATCAGTCGACATGGCCTCGCCCTCTCCGGCGAACAGTCCCATGC
CACCGCCACAGGCGCCCAGTCCGATGGCCCCGCCCTCGCAGAGTCCCGCC
CCCTCGCCGCACAGCCCGTATCCGCACCAGCAGCCGGGTCCACTGCAAGG
ACCTCCGCCACCCGGACATCCCGGTGCCTACGGACATCCCATGCAGCACG
GACCACCCGGCCAGGGTCCACCCGGGCATCATATGCCACCGCACCACCAG
GGGATGATTTTCTCAAAAGGTCCGCACATGGGAATGCAGATGCCGCCGAC
GGGACCGAACATGTCCCCCTACCAAACCCACGGAATGCCACCCAATGCAC
CCACACAACCCTGCATAGTGTCACCTGGTGGCCCACCTGGAGGCCCGCCA
CCTCCGGAGCGCTCGAGCCAGGAGAACCTGCACGCGCTTCAACGCGCCAT
TGATTCAATGGAGGAAAAGGGCTTGCAAGAGGATCCTCGCTACTCGCAGC
TGCTGGCAATGCGAGCAACCTCGAAGCATCAGCACCTTAATGGCAATCAG
GTTAACTTGTTGCGCACACAGATCACCGCCTATCGGTTGCTGGCGCGGAA
CAAGCCCATATCCATGCAGATGCAGCAGGCGTTGCAGGCCGCACAGCAAC
AGCCACCGCCAGGACCTCCAATTGGGCCACCTGGAGCACCAGGCGGACCG
CCACCAGGGAGCCAGCATGCAGGACAACCGCCCGTGCCGCCGCAACAACA
GCAACAACCGCCACCTTCAGCAGGAACTCCACCCCAGTGCTCCACGCCGC
CCGCAAGCAATCCTTATGGACCGCCAGTTCCTGGCCAGAAAATGCAGGTA
GCGCCACCACCGCCACACATGCAACAGGGACAGCCATTGCCACCACAACC
GCCACAAGTGGGTGGACCCCCGCCTATACAACAGCAGCAACCACCTCAGC
AGCAGCAACAACAGTCGCAGCCCCCGCCACCGGAGCCACATCAGCACCAG
TTGCCAAACGGAGGCAAACCCCTGAGTATGGGGCCATCTGGCGGGCAACC
ACTAATACCTTCATCACCCATGCAGCCACAAGTGAGAGGGACACTGCCAG
GAATGCCGCCAGGTAGTCAGGTTCCGCAACCAGGAGGAGGTCCTCAGCGA
CAGGTACCACCTGCGGGCATGCCGATGCCCAAGCCCAATCGCATTACAAC
GGTGGCCAAACCCGTCGGTCTGGATCCCATAACATTGCTGCAGGAAAGGG
AGAATAGGATAGCAGCCAGGATATCATTGCGCATGCAGGAGTTGCAGCGA
CTGCCGGCCACGATGTCCGAGGATCTGCGTCTGCAAGCGGCTATCGAGTT
GAGGGCCCTAAGGGTCTTGAACTTCCAGCGACAGCTGCGTATGGAGTTTG
TTCAGTGCACGAGACGAGATACCACTTTGGAAACAGCGTTAAACATTAAG
CTCTACAAGAGGACCAAGAGGCAGGGCCTGCGGGAGGCACGTGCCACCGA
GAAGCTAGAGAAGCAACAGAAGCTAGAGGCTGAACGAAAGCGTCGCCAAA
AGCATCTGGAGTTCTTGGCTGCTGTGCTTCAGCACGGCAAGGATCTAAGG
GAGTTCCACAGAAATAATAAGGCCCAGCTTGCAAGGATGAACAAGGCCGT
GATGAATCACCACGCCAATGCCGAGCGTGAACAGAAGAAGGAACAAGAGC
GCATCGAAAAGGAACGTATGCGACGTCTGATGGCCGAGGATGAGGAGGGT
TACCGCAAGCTGATTGATCAAAAGAAGGACAAGAGATTGGCTTTCCTACT
GTCGCAGACAGATGAGTATATTAGCAACCTAACTCAGATGGTGAAACAGC
ACAAGGACGACCAGATGAAGAAAAAGGAGGAGGAGGGCAAGCGGCTGATA
CAGTTCAAAAAGGAGCTGCTGATGAGCGGAGAGTACATTGGCATTGATGA
GGGCAGCATTGTTGCCGATATGCGGGTACATGTGGTGGAACAGTGCACGG
GTAAGAAACTCACCGGCGATGATGCACCCATGCTGAAGCACTTGCACCGC
TGGCTGAATATGCATCCTGGCTGGGATTGGATCGACGACGAGGAGGACAG
CTGTGGGAGCAACGACGATCATAAACCCAAGGTGGAGGAGCAACCAACGG
CAACAGAAGATGCCACCGACAAAGCGCAGGCGACGGGCAACGATGAGGAT
GCCAAGGATCTAATTACCAAGGCCAAGGTGGAGGACGATGAGTACAGGAC
GGAGGAACAGACGTACTACAGCATCGCTCATACCATTCATGAAAAGGTTG
TGGAGCAGGCCAGCATCATGGTTAATGGTACGCTCAAGGAATACCAGATC
AAAGGCTTGGAGTGGTTGGTTTCGCTGTACAATAACAATCTAAATGGTAT
TTTGGCCGATGAAATGGGTTTGGGTAAAACCATTCAAACCATTTCGCTGG
TAACCTACCTTATGGATCGAAAGAAGGTTATGGGTCCTTACTTGATTATT
GTACCACTCTCCACCCTGCCCAATTGGGTGCTGGAATTCGAGAAGTGGGC
GCCAGCCGTGGGTGTAGTCAGCTACAAGGGCAGTCCGCAGGGAAGGCGAT
TGCTGCAAAATCAAATGAGAGCAACCAAGTTCAATGTGCTGTTAACCACA
TATGAGTACGTGATTAAGGACAAGGCGGTGCTGGCCAAGATCCAGTGGAA
ATACATGATTATCGACGAGGGTCACCGCATGAAGAACCATCACTGCAAAC
TCACCCAGGTGCTGAACACCCACTACATTGCCCCCTATCGGTTACTTCTC
ACGGGTACACCTCTGCAAAACAAGCTTCCCGAGTTGTGGGCGCTACTTAA
TTTCCTGCTGCCCTCGATCTTTAAGTCCTGCTCCACATTTGAACAGTGGT
TCAATGCGCCATTTGCCACCACTGGCGAGAAGGTCGAGCTAAACGAGGAG
GAGACCATCCTTATCATTCGTCGTCTGCACAAGGTTCTTCGTCCTTTCCT
GTTGCGTCGCCTCAAAAAGGAGGTAGAGCACCAGCTGCCCGACAAGGTCG
AGTACATCATCAAGTGCGACATGTCCGCGCTGCAACGCGTTCTCTACAAG
CACATGCAGAGCAAGGGTGTCCTGCTCACCGATGGTTCCGAGAAGGGCAA
GCACGGCAAGGGAGGCGCTAAGGCGCTGATGAACACGATCGTACAGCTGC
GCAAGCTGTGCAACCATCCGTTTATGTTCCAGCACATAGAAGAGAAGTAC
TGCGATCACACTGGCGGCCACGGAGTTGTATCCGGACCGGATCTGTATCG
TGTCTCTGGCAAATTCGAGCTGCTTGATCGCATCCTGCCCAAGCTGAAGG
CGACCAATCATCGCGTGCTGCTCTTCTGTCAGATGACCCAATGCATGACC
ATCATCGAAGACTACCTGGGATGGCGCCAATTCGGCTACCTTCGACTCGA
CGGTACCACGAAGGCCGAGGATCGTGGCGAACTACTGCGAAAATTCAACG
CCAAAGGCTCGGATGTATTTGTCTTTTTGCTATCTACCCGAGCTGGTGGT
TTGGGTCTTAATCTGCAGACCGCCGATACTGTAGTAATCTTCGACTCCGA
TTGGAATCCCCATCAGGATCTGCAAGCCCAGGATCGTGCCCATCGTATTG
GTCAACGTAACGAGGTGCGCGTCCTGCGACTAATGACAGTCAACTCGGTG
GAAGAGCGCATCTTGGCAGCAGCCAGGTACAAGCTGAACATGGACGAGAA
GGTCATCCAGGCTGGTATGTTCGATCAGAAGTCAACGGGTAGCGAGCGAC
AGCAGTTCCTACAAACGATTCTGCACCAGGATGACAACGAAGAGGAGGAG
GAAAATGAGGTGCCCGATGACGAAATGATCAACATGATGATCGCCCGCAG
CGAGGAGGAGATTGAAATATTTAAGCGCATGGATGCTGAGCGCAAGAAGG
AGGATGAGGAGATCCATCCGGGTAGGGAACGTCTGATCGATGAGTCCGAG
CTACCCGACTGGTTGACAAAGGATGATGACGAAGTAGAGCGTTTCCACTA
TCAGTACGACGAGGATACCATTCTAGGTCGAGGCTCCCGGCAGCGAAAGG
AAGTAGACTACACCGATAGTTTGACTGAAAAGGAGTGGCTGAAAGCCATC
GACGATGGCGCTGAGTTCGACGAGGAAGAGGAGGAAGACGATTCGAAGCG
CAAGCGACGAAAGCGTAAGAATCGGAAGGAAGAGTCCGACGATGATTCGT
TGATCCTAAAACGGCGACGACGCCAAAATCTGGACAAGCGGTCCAAGAAG
CAGATGCACAAGATTATGAGTGCGGTTATCAAGCACAACCAAGATGGACG
AACCCTGTCCGAACCGTTCATGAAGTTGCCTTCGCGGCAGAGGTTGCCCG
ACTACTACGAGATCATTAAGCGGCCAGTTGATATTAAGAAAATCCTGCAG
CGCATTGAGGACTGCAAGTATGCCGATCTCAACGAGCTGGAGAAGGACTT
TATGCAGCTATGCCAGAATGCACAGATCTACAACGAAGAGGCGTCTCTGA
TTTACCTGGACTCGATTGCCCTGCAAAAGGTATTCGTTGGGGCCAGGCAG
AGGATAACAGCTGCAGCGGATGCAGCCGCAGTGGCAGCCGGAGATAACAC
GGGTGAAGCGCACGGCAATGGAGGTTCGGATAATTCGGACAACGACGACG
ACGATGGTGGCGATGACGGCTCCGACGACGAGGAGATTGCAACCACTTCA
GCGGCGGCTGTCAAAATGAAGCTGAAACTGAACAAATCTCTGGCTAGTGC
GCCCGCTACGCCCACGCAATCATCGTCGAATGTGAGCAGCGGAGCGGCTA
CCACATCCAAGAAGCAGACGCGTCGCAAGCGCTCCCAAAAGAAGTACACT
ATTTCAGACGATGACGACGATGACATGGACTAGAAGCTTTCTAGACCAT
BS11055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brm-RE | 4977 | CG5942-PE | 1..4917 | 17..4933 | 24585 | 100 | Plus |
| brm-RB | 4917 | CG5942-PB | 1..4917 | 17..4933 | 24585 | 100 | Plus |
| brm-RA | 4917 | CG5942-PA | 1..4917 | 17..4933 | 24585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brm-RE | 5339 | CG5942-RE | 128..5044 | 17..4933 | 24585 | 100 | Plus |
| brm-RB | 5553 | CG5942-RB | 342..5258 | 17..4933 | 24585 | 100 | Plus |
| brm-RA | 5339 | CG5942-RA | 128..5044 | 17..4933 | 24585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:29:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15972158..15975096 | 3285..347 | 14695 | 100 | Minus |
| 3L | 28110227 | 3L | 15970377..15971236 | 4933..4074 | 4300 | 100 | Minus |
| 3L | 28110227 | 3L | 15971292..15972086 | 4078..3284 | 3975 | 100 | Minus |
| 3L | 28110227 | 3L | 15982268..15982508 | 257..17 | 1205 | 100 | Minus |
| 3L | 28110227 | 3L | 15982122..15982211 | 347..258 | 450 | 100 | Minus |
| 2R | 25286936 | 2R | 12638652..12638771 | 3536..3655 | 225 | 79.2 | Plus |
| 2R | 25286936 | 2R | 12637975..12638045 | 2793..2863 | 190 | 84.5 | Plus |
Blast to na_te.dros performed 2014-11-28 02:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6681..6883 | 806..1000 | 221 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..2884 | 740..1008 | 218 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6900 | 860..999 | 205 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2282..2470 | 825..1008 | 202 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6877 | 872..1013 | 191 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6913 | 836..1000 | 185 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2513 | 848..1006 | 184 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6822 | 929..1008 | 184 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2378 | 925..1000 | 182 | 71.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6862 | 866..1009 | 178 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6852 | 929..1016 | 172 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6792 | 926..999 | 171 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2407 | 929..999 | 166 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6807 | 929..999 | 166 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6828 | 929..999 | 166 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2431 | 867..996 | 164 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2392 | 928..999 | 162 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6952 | 836..994 | 162 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1526..1591 | 916..981 | 159 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1134 | 929..999 | 157 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1587 | 927..998 | 153 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2449 | 634..772 | 152 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6823 | 928..1000 | 149 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1078..1144 | 928..1000 | 145 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2636..2915 | 736..1017 | 136 | 55 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 914..1037 | 867..991 | 136 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6898 | 836..964 | 133 | 62.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 130..195 | 928..990 | 133 | 71.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9160..9225 | 928..990 | 133 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1146 | 881..963 | 126 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6771 | 948..999 | 125 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1163 | 930..995 | 122 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1051..1158 | 851..963 | 121 | 60.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1122 | 933..999 | 120 | 67.6 | Plus |
BS11055.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:37 Download gff for
BS11055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brm-RB | 342..5258 | 17..4933 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:26 Download gff for
BS11055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brm-RA | 128..5044 | 17..4933 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:52 Download gff for
BS11055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brm-RB | 342..5258 | 17..4933 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:35 Download gff for
BS11055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brm-RA | 128..5044 | 17..4933 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:35 Download gff for
BS11055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15970377..15971233 | 4077..4933 | 100 | <- | Minus |
| 3L | 15971294..15972085 | 3285..4076 | 100 | <- | Minus |
| 3L | 15972159..15975096 | 347..3284 | 100 | <- | Minus |
| 3L | 15982123..15982211 | 258..346 | 100 | <- | Minus |
| 3L | 15982268..15982508 | 17..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:26 Download gff for
BS11055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15963477..15964333 | 4077..4933 | 100 | <- | Minus |
| arm_3L | 15964394..15965185 | 3285..4076 | 100 | <- | Minus |
| arm_3L | 15965259..15968196 | 347..3284 | 100 | <- | Minus |
| arm_3L | 15975223..15975311 | 258..346 | 100 | <- | Minus |
| arm_3L | 15975368..15975608 | 17..257 | 100 | | Minus |
BS11055.pep Sequence
Translation from 16 to 4932
> BS11055.pep
MASPSPANSPMPPPQAPSPMAPPSQSPAPSPHSPYPHQQPGPLQGPPPPG
HPGAYGHPMQHGPPGQGPPGHHMPPHHQGMIFSKGPHMGMQMPPTGPNMS
PYQTHGMPPNAPTQPCIVSPGGPPGGPPPPERSSQENLHALQRAIDSMEE
KGLQEDPRYSQLLAMRATSKHQHLNGNQVNLLRTQITAYRLLARNKPISM
QMQQALQAAQQQPPPGPPIGPPGAPGGPPPGSQHAGQPPVPPQQQQQPPP
SAGTPPQCSTPPASNPYGPPVPGQKMQVAPPPPHMQQGQPLPPQPPQVGG
PPPIQQQQPPQQQQQQSQPPPPEPHQHQLPNGGKPLSMGPSGGQPLIPSS
PMQPQVRGTLPGMPPGSQVPQPGGGPQRQVPPAGMPMPKPNRITTVAKPV
GLDPITLLQERENRIAARISLRMQELQRLPATMSEDLRLQAAIELRALRV
LNFQRQLRMEFVQCTRRDTTLETALNIKLYKRTKRQGLREARATEKLEKQ
QKLEAERKRRQKHLEFLAAVLQHGKDLREFHRNNKAQLARMNKAVMNHHA
NAEREQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDE
YISNLTQMVKQHKDDQMKKKEEEGKRLIQFKKELLMSGEYIGIDEGSIVA
DMRVHVVEQCTGKKLTGDDAPMLKHLHRWLNMHPGWDWIDDEEDSCGSND
DHKPKVEEQPTATEDATDKAQATGNDEDAKDLITKAKVEDDEYRTEEQTY
YSIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEM
GLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGV
VSYKGSPQGRRLLQNQMRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIID
EGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPS
IFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLK
KEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEKGKHGKGG
AKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGHGVVSGPDLYRVSGKF
ELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKA
EDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQ
DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAG
MFDQKSTGSERQQFLQTILHQDDNEEEEENEVPDDEMINMMIARSEEEIE
IFKRMDAERKKEDEEIHPGRERLIDESELPDWLTKDDDEVERFHYQYDED
TILGRGSRQRKEVDYTDSLTEKEWLKAIDDGAEFDEEEEEDDSKRKRRKR
KNRKEESDDDSLILKRRRRQNLDKRSKKQMHKIMSAVIKHNQDGRTLSEP
FMKLPSRQRLPDYYEIIKRPVDIKKILQRIEDCKYADLNELEKDFMQLCQ
NAQIYNEEASLIYLDSIALQKVFVGARQRITAAADAAAVAAGDNTGEAHG
NGGSDNSDNDDDDGGDDGSDDEEIATTSAAAVKMKLKLNKSLASAPATPT
QSSSNVSSGAATTSKKQTRRKRSQKKYTISDDDDDDMD*
BS11055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:14:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brm-PE | 1658 | CG5942-PE | 1..1638 | 1..1638 | 8668 | 100 | Plus |
| brm-PB | 1638 | CG5942-PB | 1..1638 | 1..1638 | 8668 | 100 | Plus |
| brm-PA | 1638 | CG5942-PA | 1..1638 | 1..1638 | 8668 | 100 | Plus |
| brm-PD | 1634 | CG5942-PD | 1..1634 | 1..1638 | 8628 | 99.7 | Plus |
| brm-PC | 1634 | CG5942-PC | 1..1634 | 1..1638 | 8628 | 99.7 | Plus |
